GREMLIN Database
RS7 - 30S ribosomal protein S7
UniProt: P21469 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 156 (151)
Sequences: 2354 (1100)
Seq/√Len: 89.5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
20_S63_E4.2111.00
30_M43_L3.2631.00
70_M96_R2.8341.00
43_L47_F2.7641.00
56_N64_Q2.6371.00
106_N110_L2.5511.00
74_E95_R2.4771.00
45_K117_E2.4141.00
136_K140_D2.3001.00
69_I104_L2.2991.00
28_N36_K2.2681.00
26_L101_L2.2241.00
49_I118_E2.2061.00
67_K70_M2.1161.00
9_K94_E2.0991.00
107_Y134_A2.0421.00
54_T125_L2.0231.00
51_K57_D1.9751.00
51_K58_A1.9511.00
47_F62_F1.9491.00
126_D131_T1.9321.00
69_I134_A1.9291.00
42_I116_M1.9211.00
22_L97_T1.9101.00
50_I61_V1.8991.00
26_L43_L1.8891.00
49_I121_A1.8791.00
130_N135_V1.8291.00
72_V96_R1.7461.00
26_L62_F1.7341.00
48_D51_K1.7091.00
57_D60_E1.6831.00
61_V128_A1.6211.00
50_I125_L1.5891.00
23_V43_L1.5861.00
70_M100_G1.5811.00
49_I117_E1.5661.00
23_V47_F1.5071.00
113_E119_R1.4951.00
26_L105_V1.4761.00
125_L128_A1.4650.99
63_E67_K1.4600.99
5_G8_A1.4030.99
29_K101_L1.4020.99
11_D21_K1.3190.99
70_M97_T1.3050.99
38_K41_T1.2910.99
113_E122_N1.2680.99
137_K141_T1.2520.98
66_L100_G1.2520.98
28_N31_M1.2490.98
50_I124_I1.2480.98
107_Y133_A1.2400.98
56_N60_E1.2050.98
25_R97_T1.1910.98
101_L105_V1.1720.98
115_T118_E1.1700.97
47_F58_A1.1630.97
77_A84_N1.1520.97
66_L135_V1.1460.97
98_T102_R1.1290.97
32_I109_R1.1010.96
50_I54_T1.0930.96
95_R99_L1.0900.96
135_V138_R1.0590.95
25_R31_M1.0580.95
47_F50_I1.0550.95
26_L124_I1.0530.95
30_M39_S1.0500.95
29_K97_T1.0500.95
66_L101_L1.0320.95
69_I124_I1.0300.95
17_I48_D1.0140.94
46_S120_L1.0040.94
75_V86_Q0.9990.94
117_E121_A0.9940.94
64_Q128_A0.9840.93
27_I40_Q0.9830.93
122_N126_D0.9800.93
76_K89_V0.9660.93
68_N127_A0.9610.92
99_L102_R0.9530.92
37_G40_Q0.9500.92
22_L66_L0.9450.92
85_Y151_F0.9360.91
86_Q148_N0.9260.91
99_L103_W0.9240.91
107_Y110_L0.9210.91
114_K119_R0.9140.90
26_L66_L0.9110.90
113_E131_T0.9090.90
29_K105_V0.9080.90
15_D44_Y0.9080.90
112_G149_K0.8960.90
111_R122_N0.8950.90
12_V24_S0.8790.89
68_N128_A0.8780.89
68_N130_N0.8670.88
41_T45_K0.8590.88
54_T128_A0.8570.87
60_E64_Q0.8430.87
23_V62_F0.8310.86
146_E149_K0.8260.85
81_G85_Y0.8150.85
22_L101_L0.8140.85
85_Y99_L0.7980.83
76_K87_V0.7850.82
69_I135_V0.7830.82
104_L124_I0.7800.82
32_I105_V0.7790.82
64_Q67_K0.7670.81
49_I53_R0.7660.81
56_N61_V0.7640.81
80_V90_E0.7520.80
74_E99_L0.7490.79
45_K48_D0.7390.78
6_P9_K0.7380.78
72_V130_N0.7360.78
79_R86_Q0.7330.78
136_K139_E0.7290.77
139_E143_K0.7280.77
77_A86_Q0.7190.76
23_V59_M0.7170.76
24_S40_Q0.7160.76
50_I121_A0.7160.76
29_K38_K0.7150.76
15_D18_Y0.7080.75
76_K91_V0.7080.75
53_R125_L0.6980.74
83_A91_V0.6960.74
77_A89_V0.6940.74
79_R145_A0.6920.74
29_K98_T0.6900.73
30_M42_I0.6850.73
115_T122_N0.6850.73
78_R85_Y0.6850.73
45_K118_E0.6820.73
6_P61_V0.6740.72
7_V10_R0.6710.71
89_V154_Y0.6650.71
82_G151_F0.6640.71
65_A68_N0.6570.70
131_T154_Y0.6510.69
22_L32_I0.6500.69
109_R116_M0.6490.69
93_P96_R0.6490.69
16_P40_Q0.6460.69
48_D52_E0.6460.69
25_R29_K0.6460.69
18_Y44_Y0.6420.68
67_K87_V0.6370.67
6_P125_L0.6370.67
81_G150_A0.6350.67
5_G101_L0.6290.66
53_R122_N0.6270.66
5_G77_A0.6260.66
46_S50_I0.6220.66
103_W141_T0.6220.66
138_R142_H0.6190.65
17_I51_K0.6190.65
127_A135_V0.6150.65
73_L77_A0.6140.65
83_A89_V0.6120.64
127_A132_G0.6110.64
104_L127_A0.6080.64
91_V99_L0.6030.63
141_T144_M0.6030.63
113_E116_M0.6010.63
22_L96_R0.5980.63
118_E122_N0.5980.63
127_A134_A0.5970.62
27_I44_Y0.5960.62
8_A12_V0.5960.62
47_F128_A0.5920.62
20_S47_F0.5920.62
78_R86_Q0.5920.62
29_K66_L0.5910.62
67_K96_R0.5890.61
49_I52_E0.5880.61
68_N95_R0.5850.61
54_T61_V0.5810.60
94_E98_T0.5700.59
14_P18_Y0.5640.58
11_D41_T0.5630.58
21_K24_S0.5620.58
6_P96_R0.5550.57
6_P29_K0.5550.57
79_R87_V0.5530.57
8_A96_R0.5530.57
108_A124_I0.5530.57
91_V142_H0.5480.56
111_R115_T0.5460.56
124_I128_A0.5460.56
108_A111_R0.5450.56
30_M97_T0.5440.55
34_G123_E0.5430.55
44_Y78_R0.5410.55
73_L116_M0.5410.55
79_R144_M0.5380.55
70_M93_P0.5380.55
30_M105_V0.5340.54
5_G89_V0.5320.54
73_L145_A0.5280.53
10_R94_E0.5280.53
86_Q144_M0.5260.53
50_I65_A0.5260.53
88_P103_W0.5250.53
50_I128_A0.5200.52
116_M119_R0.5200.52
111_R126_D0.5150.51
17_I55_G0.5150.51
12_V25_R0.5150.51
100_G122_N0.5130.51
79_R148_N0.5120.51
51_K55_G0.5110.51
71_P103_W0.5110.51
140_D143_K0.5090.51
140_D144_M0.5070.50
9_K25_R0.5070.50
74_E151_F0.5070.50
26_L31_M0.5060.50
110_L133_A0.5030.50
60_E63_E0.5010.50
80_V84_N0.5000.49
103_W137_K0.5000.49
131_T137_K0.5000.49
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4kiyG 1 0.9679 100 0.007 Contact Map
1husA 1 0.891 100 0.028 Contact Map
1rssA 1 0.8974 100 0.053 Contact Map
3bbnG 1 0.9872 100 0.057 Contact Map
3gtyS 1 0.9551 100 0.057 Contact Map
5aj3G 1 0.9936 100 0.071 Contact Map
4tp8G 1 0.9679 100 0.095 Contact Map
3zey2 1 0.9551 100 0.199 Contact Map
4bpeG 1 0.9551 100 0.2 Contact Map
4ujpG 1 0.9295 100 0.203 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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