AROA - BACSU - GREMLIN Contacts

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AROA - 3-phosphoshikimate 1-carboxyvinyltransferase

UniProt:	P20691	Sequences: MKRDKVQTLHGEIHIPGDKSISHRSVMFGALAAGTTTVKNFLPGADCLSTIDCFRKMGVHIEQSSSDVVIHGKGIDALKEPESLLDVGNSGTTIRLMLGILAGRPFYSAVAGDESIAKRPMKRVTEPLKKMGAKIDGRAGGEFTPLSVSGASLKGIDYVSPVASAQIKSAVLLAGLQAEGTTTVTEPHKSRDHTERMLSAFGVKLSEDQTSVSIAGGQKLTAADIFVPGDISSAAFFLAAGAMVPNSRIVLKNVGLNPTRTGIIDVLQNMGAKLEIKPSADSGAEPYGDLIIETSSLKAVEIGGDIIPRLIDEIPIIALLATQAEGTTVIKDAAELKVKETNRIDTVVSELRKLGAEIEPTADGMKVYGKQTLKGGAAVSSHGDHRIGMMLGIASCITEEPIEIEHTDAIHVSYPTFFEHLNKLSKKS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	428 (394)
Sequences:	7856 (4858)
Seq/√Len:	244.7

ECOLI - AROA MURA
BACSU - AROA MURA2 MURA1
HALSA - AROA
SULSO - AROA

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
12_E	252_K	4.139	1.00
357_E	368_Y	3.902	1.00
39_K	224_D	3.505	1.00
181_T	215_A	3.218	1.00
416_T	419_E	3.152	1.00
33_A	219_K	2.911	1.00
204_K	215_A	2.879	1.00
14_H	252_K	2.804	1.00
39_K	226_F	2.791	1.00
35_T	71_H	2.781	1.00
152_S	179_E	2.748	1.00
242_A	272_A	2.707	1.00
198_L	203_V	2.696	1.00
414_Y	420_H	2.659	1.00
327_T	368_Y	2.635	1.00
37_T	224_D	2.602	1.00
111_A	117_A	2.575	1.00
296_S	325_E	2.510	1.00
378_A	405_E	2.486	1.00
243_M	393_I	2.479	1.00
134_K	149_S	2.466	1.00
43_P	48_L	2.446	1.00
39_K	67_D	2.368	1.00
52_D	55_R	2.363	1.00
350_E	353_K	2.319	1.00
249_I	424_L	2.314	1.00
239_A	320_L	2.291	1.00
248_R	290_L	2.290	1.00
378_A	403_E	2.273	1.00
277_K	280_A	2.271	1.00
35_T	69_V	2.194	1.00
372_T	399_E	2.189	1.00
37_T	69_V	2.178	1.00
127_P	171_V	2.149	1.00
37_T	67_D	2.148	1.00
62_E	69_V	2.133	1.00
164_S	167_I	2.131	1.00
157_D	185_T	2.091	1.00
181_T	213_S	2.081	1.00
361_T	364_G	2.079	1.00
395_S	402_I	2.071	1.00
172_L	195_E	2.039	1.00
323_Q	397_I	2.030	1.00
301_E	331_K	1.989	1.00
107_Y	147_S	1.961	1.00
350_E	391_L	1.955	1.00
43_P	63_Q	1.955	1.00
248_R	291_I	1.952	1.00
329_V	366_K	1.949	1.00
10_H	248_R	1.924	1.00
29_G	36_T	1.913	1.00
122_K	126_E	1.826	1.00
250_V	277_K	1.789	1.00
351_L	356_A	1.760	1.00
319_L	390_M	1.737	1.00
27_M	50_T	1.728	1.00
356_A	373_L	1.708	1.00
22_S	41_F	1.705	1.00
359_E	366_K	1.702	1.00
99_G	170_A	1.696	1.00
60_H	71_H	1.688	1.00
298_K	325_E	1.662	1.00
183_T	213_S	1.655	1.00
51_I	68_V	1.653	1.00
359_E	368_Y	1.647	1.00
126_E	130_K	1.631	1.00
327_T	366_K	1.625	1.00
235_A	313_E	1.614	1.00
354_L	402_I	1.607	1.00
350_E	382_H	1.601	1.00
158_Y	185_T	1.595	1.00
25_S	197_M	1.572	1.00
154_K	179_E	1.569	1.00
185_T	211_S	1.569	1.00
203_V	220_L	1.563	1.00
183_T	211_S	1.560	1.00
301_E	329_V	1.556	1.00
136_D	149_S	1.556	1.00
348_V	358_I	1.552	1.00
250_V	280_A	1.540	1.00
136_D	147_S	1.518	1.00
34_G	222_A	1.513	1.00
354_L	377_A	1.507	1.00
63_Q	68_V	1.501	1.00
199_S	208_D	1.500	1.00
51_I	61_I	1.499	1.00
155_G	178_A	1.499	1.00
238_L	264_I	1.490	1.00
206_S	215_A	1.484	1.00
392_G	417_F	1.481	1.00
345_D	360_P	1.461	1.00
265_D	268_Q	1.461	1.00
379_V	391_L	1.453	1.00
26_V	54_F	1.436	1.00
348_V	360_P	1.430	1.00
322_T	356_A	1.427	1.00
208_D	212_V	1.424	1.00
12_E	250_V	1.420	1.00
133_A	153_L	1.403	1.00
117_A	139_A	1.394	1.00
273_K	293_E	1.389	1.00
299_A	327_T	1.373	1.00
115_S	118_K	1.369	1.00
228_P	258_P	1.364	1.00
299_A	328_T	1.353	1.00
55_R	61_I	1.340	1.00
84_L	109_A	1.327	1.00
125_T	137_G	1.325	1.00
238_L	251_L	1.318	1.00
201_F	223_A	1.316	1.00
354_L	394_A	1.315	1.00
26_V	51_I	1.312	1.00
13_I	424_L	1.309	1.00
342_N	345_D	1.309	1.00
321_A	328_T	1.309	1.00
348_V	365_M	1.304	1.00
318_A	330_I	1.303	1.00
240_A	396_C	1.298	1.00
138_R	147_S	1.298	1.00
15_I	251_L	1.296	1.00
239_A	263_I	1.296	1.00
420_H	423_K	1.296	1.00
326_G	369_G	1.294	1.00
95_R	169_S	1.290	1.00
184_V	187_P	1.288	1.00
156_I	185_T	1.283	1.00
345_D	349_S	1.282	1.00
48_L	63_Q	1.280	1.00
248_R	293_E	1.277	1.00
238_L	267_L	1.269	1.00
234_A	254_V	1.268	1.00
62_E	71_H	1.262	1.00
59_V	70_I	1.254	1.00
14_H	253_N	1.247	1.00
41_F	47_C	1.243	1.00
32_A	36_T	1.240	1.00
267_L	272_A	1.238	1.00
250_V	290_L	1.237	1.00
248_R	292_I	1.236	1.00
304_G	332_D	1.233	1.00
199_S	204_K	1.228	1.00
22_S	47_C	1.218	1.00
52_D	56_K	1.216	1.00
200_A	223_A	1.215	1.00
179_E	218_Q	1.211	1.00
270_M	300_V	1.208	1.00
172_L	214_I	1.208	1.00
195_E	205_L	1.199	1.00
346_T	382_H	1.196	1.00
38_V	227_V	1.195	1.00
395_S	404_I	1.192	1.00
90_S	93_T	1.186	1.00
206_S	213_S	1.180	1.00
25_S	227_V	1.172	1.00
361_T	366_K	1.168	1.00
134_K	151_A	1.167	1.00
189_K	210_T	1.167	1.00
237_F	414_Y	1.164	1.00
388_G	410_I	1.161	1.00
266_V	302_I	1.161	1.00
146_L	150_G	1.159	1.00
36_T	197_M	1.153	1.00
107_Y	149_S	1.146	1.00
243_M	397_I	1.144	1.00
192_D	196_R	1.140	1.00
129_K	134_K	1.140	1.00
416_T	420_H	1.123	1.00
23_H	50_T	1.121	1.00
156_I	183_T	1.121	1.00
38_V	70_I	1.109	1.00
256_L	276_I	1.102	1.00
323_Q	370_K	1.101	1.00
175_G	182_T	1.096	1.00
240_A	393_I	1.089	1.00
34_G	221_T	1.088	1.00
266_V	317_I	1.085	1.00
356_A	370_K	1.077	1.00
267_L	320_L	1.075	1.00
157_D	183_T	1.070	1.00
319_L	394_A	1.070	1.00
125_T	129_K	1.068	1.00
126_E	129_K	1.068	1.00
358_I	365_M	1.067	1.00
388_G	409_A	1.063	1.00
55_R	60_H	1.056	1.00
255_G	258_P	1.055	1.00
303_G	332_D	1.053	1.00
379_V	402_I	1.046	1.00
244_V	247_S	1.043	1.00
64_S	67_D	1.042	1.00
236_F	389_M	1.042	1.00
374_K	399_E	1.041	1.00
270_M	324_A	1.038	1.00
29_G	70_I	1.023	1.00
49_S	52_D	1.019	1.00
242_A	295_S	1.018	1.00
169_S	194_T	1.015	1.00
49_S	88_G	1.012	1.00
79_K	107_Y	1.008	1.00
268_Q	276_I	1.004	1.00
153_L	178_A	1.002	1.00
59_V	72_G	0.999	1.00
419_E	422_N	0.998	1.00
235_A	316_I	0.997	1.00
36_T	223_A	0.993	1.00
137_G	142_E	0.989	1.00
398_T	402_I	0.986	1.00
9_L	240_A	0.983	1.00
53_C	87_V	0.978	1.00
239_A	267_L	0.976	1.00
195_E	208_D	0.975	1.00
250_V	291_I	0.975	1.00
180_G	216_G	0.975	1.00
239_A	313_E	0.973	1.00
25_S	38_V	0.972	1.00
32_A	222_A	0.971	1.00
321_A	330_I	0.968	1.00
352_R	357_E	0.964	1.00
158_Y	161_P	0.961	1.00
266_V	269_N	0.959	1.00
154_K	180_G	0.958	1.00
299_A	324_A	0.953	1.00
327_T	369_G	0.951	1.00
233_S	420_H	0.948	1.00
146_L	149_S	0.948	1.00
299_A	326_G	0.945	1.00
55_R	63_Q	0.940	1.00
159_V	185_T	0.935	1.00
334_A	362_A	0.932	1.00
344_I	365_M	0.931	1.00
377_A	402_I	0.930	1.00
84_L	111_A	0.930	1.00
383_G	406_H	0.929	1.00
330_I	365_M	0.926	1.00
268_Q	273_K	0.923	1.00
241_G	244_V	0.923	1.00
313_E	316_I	0.920	1.00
231_I	263_I	0.919	1.00
123_R	162_V	0.918	1.00
131_M	156_I	0.918	1.00
54_F	59_V	0.917	1.00
353_K	377_A	0.913	1.00
225_I	228_P	0.912	1.00
45_A	411_H	0.911	1.00
24_R	27_M	0.906	1.00
198_L	220_L	0.903	1.00
246_N	294_T	0.900	1.00
406_H	409_A	0.894	1.00
199_S	207_E	0.890	1.00
318_A	346_T	0.884	1.00
51_I	63_Q	0.882	1.00
176_L	203_V	0.882	1.00
124_V	170_A	0.881	1.00
9_L	247_S	0.881	1.00
51_I	55_R	0.880	1.00
34_G	72_G	0.877	0.99
41_F	68_V	0.873	0.99
297_L	324_A	0.873	0.99
109_A	147_S	0.866	0.99
322_T	370_K	0.865	0.99
330_I	333_A	0.863	0.99
125_T	135_I	0.859	0.99
208_D	211_S	0.857	0.99
199_S	205_L	0.856	0.99
196_R	200_A	0.855	0.99
197_M	201_F	0.854	0.99
40_N	226_F	0.854	0.99
114_E	385_H	0.853	0.99
381_S	388_G	0.852	0.99
323_Q	371_Q	0.851	0.99
238_L	241_G	0.851	0.99
135_I	148_V	0.846	0.99
322_T	351_L	0.844	0.99
181_T	216_G	0.841	0.99
344_I	360_P	0.838	0.99
11_G	424_L	0.838	0.99
270_M	297_L	0.835	0.99
360_P	364_G	0.834	0.99
333_A	364_G	0.834	0.99
176_L	220_L	0.832	0.99
264_I	268_Q	0.831	0.99
324_A	328_T	0.826	0.99
101_L	133_A	0.825	0.99
99_G	173_L	0.820	0.99
15_I	234_A	0.820	0.99
192_D	231_I	0.820	0.99
270_M	321_A	0.819	0.99
87_V	116_I	0.815	0.99
200_A	225_I	0.813	0.99
161_P	266_V	0.813	0.99
291_I	294_T	0.812	0.99
31_L	100_I	0.811	0.99
243_M	323_Q	0.807	0.99
56_K	81_P	0.807	0.99
226_F	253_N	0.807	0.99
80_E	138_R	0.805	0.99
63_Q	66_S	0.796	0.99
318_A	365_M	0.795	0.99
160_S	163_A	0.794	0.99
197_M	223_A	0.788	0.99
318_A	367_V	0.788	0.99
160_S	171_V	0.787	0.99
43_P	66_S	0.786	0.99
273_K	292_I	0.785	0.99
35_T	72_G	0.784	0.99
30_A	54_F	0.783	0.99
13_I	251_L	0.782	0.99
16_P	420_H	0.781	0.99
27_M	100_I	0.780	0.99
196_R	199_S	0.777	0.99
78_L	104_R	0.776	0.99
94_I	121_M	0.776	0.99
116_I	341_T	0.775	0.99
135_I	146_L	0.774	0.99
22_S	227_V	0.772	0.99
407_T	410_I	0.770	0.99
171_V	184_V	0.767	0.99
66_S	415_P	0.765	0.99
126_E	161_P	0.763	0.99
178_A	182_T	0.763	0.99
40_N	253_N	0.762	0.99
172_L	212_V	0.761	0.99
18_D	22_S	0.759	0.99
277_K	281_D	0.756	0.98
395_S	421_L	0.755	0.98
316_I	393_I	0.754	0.98
15_I	237_F	0.754	0.98
408_D	411_H	0.752	0.98
29_G	72_G	0.751	0.98
21_I	197_M	0.750	0.98
155_G	179_E	0.749	0.98
98_L	148_V	0.748	0.98
16_P	233_S	0.747	0.98
300_V	328_T	0.747	0.98
331_K	361_T	0.744	0.98
272_A	297_L	0.744	0.98
45_A	49_S	0.743	0.98
270_M	320_L	0.742	0.98
80_E	83_S	0.741	0.98
411_H	418_F	0.739	0.98
243_M	319_L	0.738	0.98
331_K	364_G	0.736	0.98
241_G	249_I	0.732	0.98
263_I	313_E	0.731	0.98
14_H	40_N	0.731	0.98
83_S	117_A	0.730	0.98
238_L	242_A	0.728	0.98
354_L	379_V	0.728	0.98
199_S	206_S	0.726	0.98
276_I	281_D	0.725	0.98
242_A	267_L	0.725	0.98
26_V	68_V	0.723	0.98
237_F	420_H	0.722	0.98
375_G	402_I	0.721	0.98
102_A	133_A	0.720	0.98
55_R	62_E	0.716	0.98
349_S	382_H	0.715	0.98
392_G	410_I	0.715	0.98
276_I	280_A	0.710	0.98
122_K	142_E	0.709	0.98
87_V	110_V	0.709	0.98
240_A	421_L	0.707	0.98
315_P	387_I	0.706	0.98
28_F	197_M	0.704	0.98
93_T	412_V	0.703	0.98
175_G	184_V	0.703	0.98
166_Q	193_H	0.702	0.98
114_E	118_K	0.702	0.98
147_S	150_G	0.702	0.98
97_M	128_L	0.699	0.97
35_T	222_A	0.693	0.97
234_A	251_L	0.693	0.97
160_S	190_S	0.691	0.97
357_E	370_K	0.691	0.97
266_V	300_V	0.690	0.97
160_S	184_V	0.689	0.97
131_M	154_K	0.688	0.97
328_T	367_V	0.686	0.97
123_R	163_A	0.683	0.97
17_G	227_V	0.681	0.97
94_I	110_V	0.680	0.97
354_L	398_T	0.677	0.97
174_A	178_A	0.676	0.97
303_G	331_K	0.675	0.97
21_I	24_R	0.673	0.97
101_L	108_S	0.672	0.97
59_V	73_K	0.672	0.97
137_G	146_L	0.672	0.97
8_T	247_S	0.671	0.97
418_F	422_N	0.671	0.97
293_E	297_L	0.669	0.97
98_L	110_V	0.669	0.97
264_I	276_I	0.669	0.97
30_A	59_V	0.668	0.97
319_L	391_L	0.664	0.97
291_I	295_S	0.663	0.97
26_V	70_I	0.663	0.97
278_P	281_D	0.661	0.96
98_L	124_V	0.661	0.96
396_C	421_L	0.660	0.96
84_L	117_A	0.656	0.96
101_L	110_V	0.655	0.96
196_R	225_I	0.655	0.96
244_V	396_C	0.655	0.96
290_L	293_E	0.653	0.96
236_F	316_I	0.653	0.96
182_T	216_G	0.653	0.96
101_L	128_L	0.652	0.96
81_P	84_L	0.649	0.96
51_I	70_I	0.649	0.96
352_R	358_I	0.649	0.96
131_M	182_T	0.647	0.96
95_R	166_Q	0.646	0.96
204_K	217_G	0.645	0.96
241_G	251_L	0.643	0.96
87_V	94_I	0.641	0.96
109_A	138_R	0.641	0.96
13_I	420_H	0.640	0.96
54_F	97_M	0.638	0.96
25_S	225_I	0.637	0.96
333_A	344_I	0.635	0.96
235_A	263_I	0.633	0.96
343_R	384_D	0.633	0.96
238_L	290_L	0.633	0.96
199_S	203_V	0.632	0.95
119_R	386_R	0.632	0.95
128_L	133_A	0.630	0.95
304_G	314_I	0.630	0.95
39_K	66_S	0.630	0.95
315_P	346_T	0.629	0.95
381_S	404_I	0.627	0.95
22_S	42_L	0.625	0.95
155_G	182_T	0.625	0.95
322_T	371_Q	0.624	0.95
207_E	210_T	0.624	0.95
242_A	297_L	0.623	0.95
246_N	295_S	0.623	0.95
9_L	249_I	0.623	0.95
87_V	93_T	0.623	0.95
293_E	296_S	0.622	0.95
95_R	340_E	0.621	0.95
299_A	325_E	0.620	0.95
241_G	246_N	0.619	0.95
292_I	295_S	0.618	0.95
123_R	126_E	0.616	0.95
119_R	343_R	0.614	0.95
121_M	125_T	0.612	0.95
268_Q	274_L	0.610	0.95
197_M	225_I	0.610	0.95
275_E	291_I	0.608	0.94
381_S	406_H	0.608	0.94
269_N	306_I	0.604	0.94
381_S	409_A	0.603	0.94
410_I	418_F	0.602	0.94
344_I	348_V	0.601	0.94
375_G	398_T	0.600	0.94
207_E	212_V	0.599	0.94
264_I	274_L	0.599	0.94
201_F	220_L	0.596	0.94
238_L	274_L	0.595	0.94
23_H	27_M	0.595	0.94
239_A	316_I	0.593	0.94
33_A	72_G	0.592	0.94
32_A	72_G	0.591	0.94
353_K	391_L	0.590	0.94
42_L	233_S	0.590	0.94
344_I	364_G	0.588	0.93
392_G	418_F	0.588	0.93
129_K	135_I	0.586	0.93
304_G	317_I	0.586	0.93
57_M	101_L	0.585	0.93
24_R	95_R	0.585	0.93
80_E	84_L	0.585	0.93
237_F	417_F	0.584	0.93
375_G	395_S	0.583	0.93
318_A	348_V	0.583	0.93
314_I	344_I	0.583	0.93
319_L	351_L	0.583	0.93
319_L	322_T	0.582	0.93
172_L	184_V	0.580	0.93
241_G	247_S	0.579	0.93
373_L	394_A	0.578	0.93
198_L	201_F	0.578	0.93
341_T	346_T	0.577	0.93
315_P	341_T	0.576	0.93
32_A	71_H	0.575	0.93
26_V	50_T	0.575	0.93
374_K	377_A	0.574	0.93
266_V	307_I	0.573	0.93
43_P	68_V	0.572	0.92
407_T	418_F	0.572	0.92
302_I	317_I	0.571	0.92
54_F	61_I	0.569	0.92
48_L	52_D	0.569	0.92
237_F	421_L	0.568	0.92
322_T	373_L	0.566	0.92
349_S	352_R	0.565	0.92
383_G	409_A	0.565	0.92
329_V	364_G	0.563	0.92
64_S	69_V	0.563	0.92
34_G	223_A	0.562	0.92
229_G	251_L	0.562	0.92
34_G	71_H	0.562	0.92
145_P	150_G	0.560	0.92
45_A	48_L	0.560	0.92
243_M	320_L	0.559	0.92
129_K	137_G	0.558	0.92
356_A	394_A	0.558	0.92
195_E	212_V	0.555	0.91
215_A	218_Q	0.555	0.91
162_V	334_A	0.554	0.91
23_H	93_T	0.554	0.91
322_T	397_I	0.553	0.91
389_M	417_F	0.553	0.91
346_T	409_A	0.553	0.91
127_P	131_M	0.552	0.91
13_I	237_F	0.552	0.91
19_K	119_R	0.549	0.91
330_I	367_V	0.549	0.91
232_S	385_H	0.547	0.91
196_R	208_D	0.547	0.91
377_A	400_E	0.546	0.91
75_I	104_R	0.546	0.91
299_A	369_G	0.545	0.91
419_E	423_K	0.545	0.91
346_T	387_I	0.543	0.90
53_C	97_M	0.541	0.90
60_H	63_Q	0.540	0.90
129_K	136_D	0.540	0.90
99_G	102_A	0.539	0.90
110_V	146_L	0.538	0.90
72_G	103_G	0.538	0.90
254_V	258_P	0.538	0.90
36_T	201_F	0.538	0.90
124_V	127_P	0.537	0.90
275_E	290_L	0.536	0.90
203_V	217_G	0.536	0.90
203_V	218_Q	0.536	0.90
248_R	273_K	0.536	0.90
76_D	104_R	0.534	0.90
300_V	324_A	0.534	0.90
388_G	418_F	0.534	0.90
107_Y	145_P	0.534	0.90
273_K	295_S	0.532	0.89
352_R	356_A	0.532	0.89
83_S	111_A	0.531	0.89
23_H	413_S	0.529	0.89
329_V	361_T	0.529	0.89
80_E	107_Y	0.528	0.89
80_E	87_V	0.528	0.89
145_P	148_V	0.528	0.89
321_A	367_V	0.528	0.89
89_N	113_D	0.527	0.89
314_I	330_I	0.527	0.89
241_G	272_A	0.526	0.89
252_K	280_A	0.526	0.89
318_A	358_I	0.526	0.89
53_C	96_L	0.526	0.89
275_E	292_I	0.525	0.89
43_P	65_S	0.523	0.89
138_R	143_F	0.523	0.89
175_G	198_L	0.523	0.89
125_T	146_L	0.523	0.89
166_Q	169_S	0.522	0.89
18_D	228_P	0.519	0.88
153_L	179_E	0.519	0.88
357_E	371_Q	0.518	0.88
354_L	373_L	0.518	0.88
103_G	177_Q	0.516	0.88
277_K	291_I	0.515	0.88
123_R	160_S	0.515	0.88
123_R	164_S	0.515	0.88
170_A	174_A	0.513	0.88
231_I	264_I	0.512	0.88
50_T	95_R	0.511	0.88
203_V	222_A	0.510	0.87
92_T	96_L	0.508	0.87
128_L	171_V	0.508	0.87
191_R	207_E	0.508	0.87
325_E	371_Q	0.508	0.87
195_E	199_S	0.508	0.87
354_L	400_E	0.507	0.87
60_H	74_G	0.506	0.87
98_L	170_A	0.505	0.87
15_I	254_V	0.505	0.87
346_T	412_V	0.504	0.87
270_M	328_T	0.503	0.87
204_K	218_Q	0.502	0.87
238_L	291_I	0.502	0.87
290_L	294_T	0.502	0.87
265_D	269_N	0.500	0.86

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3rmtA	4	0.9977	100	0.064	Contact Map
2pqcA	1	0.9953	100	0.078	Contact Map
3slhA	4	0.9907	100	0.115	Contact Map
1rf6A	1	0.9907	100	0.117	Contact Map
3nvsA	1	0.9579	100	0.186	Contact Map
2o0bA	1	0.9322	100	0.192	Contact Map
3zh4A	1	0.9299	100	0.249	Contact Map
3r38A	2	0.9393	100	0.256	Contact Map
4fqdA	2	0.9299	100	0.269	Contact Map
1ejdA	4	0.9439	100	0.272	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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