GREMLIN Database
FLIJ - Flagellar FliJ protein
UniProt: P20487 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 147 (144)
Sequences: 115 (105)
Seq/√Len: 8.8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
10_L114_M4.1300.98
36_A116_E3.3600.94
34_N142_F2.5590.81
43_M90_K2.4480.77
91_R94_M2.2720.72
40_Y60_G2.1690.68
98_Q102_T2.1040.66
3_Y115_R2.0240.62
32_F94_M1.9690.60
106_I109_K1.9330.59
28_S65_E1.9220.58
5_F115_R1.9130.58
44_S90_K1.8960.57
123_A137_I1.8670.56
87_V94_M1.8300.54
44_S84_Q1.8280.54
43_M91_R1.8110.53
73_V136_D1.8010.53
8_Q87_V1.7910.53
37_E75_N1.7900.53
109_K141_Q1.6990.49
84_Q107_E1.6490.47
84_Q91_R1.6440.46
28_S94_M1.6350.46
48_L123_A1.5940.44
43_M94_M1.5800.44
20_Q51_Q1.5790.44
38_K103_E1.5740.43
32_F91_R1.5500.42
120_K123_A1.5490.42
37_E67_R1.5480.42
19_D95_N1.5370.42
83_Y86_L1.5280.41
44_S91_R1.5110.41
86_L142_F1.4670.39
72_F87_V1.4570.39
127_K140_K1.4280.37
28_S92_N1.4160.37
50_E98_Q1.4150.37
51_Q90_K1.3920.36
51_Q54_E1.3770.35
107_E110_K1.3720.35
66_M140_K1.3620.35
42_N90_K1.3450.34
2_A10_L1.3240.33
29_V94_M1.3220.33
42_N83_Y1.3170.33
40_Y91_R1.3130.33
3_Y77_D1.2830.32
59_S142_F1.2600.31
49_L78_N1.2590.31
9_K28_S1.2490.30
13_L16_N1.2200.29
7_F140_K1.2150.29
7_F72_F1.1940.29
16_N26_Q1.1920.28
40_Y94_M1.1720.28
47_E91_R1.1640.27
37_E71_Q1.1480.27
13_L26_Q1.1460.27
9_K66_M1.1290.26
49_L104_K1.1210.26
36_A98_Q1.1130.26
104_K108_V1.1040.25
134_M139_I1.1030.25
14_K138_S1.1020.25
40_Y44_S1.1000.25
14_K30_S1.0820.25
69_Y85_K1.0800.25
44_S136_D1.0800.25
24_E45_K1.0670.24
50_E127_K1.0630.24
31_E34_N1.0630.24
125_E128_A1.0620.24
8_Q97_K1.0560.24
64_Q67_R1.0480.24
16_N24_E1.0440.24
13_L57_L1.0360.23
128_A132_K1.0350.23
34_N103_E1.0330.23
100_I144_I1.0240.23
7_F130_E1.0200.23
27_Q92_N1.0190.23
22_L105_N1.0080.22
67_R83_Y0.9820.22
18_K25_Y0.9740.21
76_L139_I0.9560.21
11_L115_R0.9480.21
32_F43_M0.9180.20
76_L138_S0.9110.20
6_R105_N0.9090.20
21_S34_N0.9080.20
17_E130_E0.9030.19
33_E91_R0.8950.19
5_F22_L0.8900.19
32_F36_A0.8850.19
15_E114_M0.8850.19
123_A136_D0.8830.19
9_K109_K0.8770.19
87_V105_N0.8670.19
90_K142_F0.8660.19
120_K129_A0.8590.18
7_F69_Y0.8580.18
44_S60_G0.8550.18
84_Q110_K0.8540.18
78_N118_Q0.8520.18
105_N115_R0.8510.18
18_K111_F0.8440.18
32_F90_K0.8400.18
45_K132_K0.8370.18
65_E115_R0.8370.18
28_S40_Y0.8320.18
42_N109_K0.8230.17
13_L71_Q0.8200.17
138_S141_Q0.8040.17
11_L112_E0.7970.17
72_F76_L0.7910.17
119_F122_F0.7900.17
105_N118_Q0.7890.17
41_E130_E0.7890.17
85_K139_I0.7790.16
14_K143_M0.7710.16
58_K124_L0.7700.16
3_Y65_E0.7690.16
91_R110_K0.7670.16
13_L133_E0.7550.16
22_L106_I0.7550.16
59_S99_E0.7500.16
8_Q12_E0.7480.16
33_E110_K0.7450.16
41_E68_H0.7420.16
60_G77_D0.7400.15
44_S142_F0.7350.15
9_K107_E0.7330.15
91_R112_E0.7320.15
28_S51_Q0.7310.15
25_Y113_K0.7290.15
32_F110_K0.7210.15
41_E116_E0.7120.15
25_Y110_K0.7110.15
33_E44_S0.7100.15
31_E127_K0.7090.15
3_Y68_H0.7060.15
35_V116_E0.7030.15
45_K72_F0.6880.14
50_E54_E0.6810.14
128_A137_I0.6790.14
6_R75_N0.6770.14
43_M84_Q0.6760.14
85_K104_K0.6700.14
96_Q142_F0.6660.14
60_G114_M0.6620.14
31_E48_L0.6600.14
92_N141_Q0.6580.14
14_K139_I0.6550.14
64_Q99_E0.6540.14
5_F122_F0.6530.14
61_M126_D0.6470.14
90_K94_M0.6330.13
84_Q94_M0.6270.13
26_Q131_M0.6230.13
15_E113_K0.6230.13
28_S35_V0.6190.13
40_Y47_E0.6190.13
3_Y122_F0.6180.13
33_E112_E0.6130.13
125_E129_A0.6110.13
6_R115_R0.6070.13
47_E94_M0.6050.13
33_E84_Q0.6030.13
34_N119_F0.5990.13
3_Y118_Q0.5970.13
2_A28_S0.5960.13
8_Q95_N0.5950.12
12_E87_V0.5940.12
51_Q121_M0.5930.12
63_V116_E0.5910.12
67_R75_N0.5900.12
15_E66_M0.5890.12
36_A91_R0.5860.12
33_E43_M0.5840.12
68_H74_S0.5830.12
62_S129_A0.5810.12
50_E137_I0.5800.12
110_K113_K0.5750.12
31_E82_H0.5730.12
49_L60_G0.5700.12
42_N74_S0.5690.12
9_K84_Q0.5680.12
104_K122_F0.5680.12
65_E124_L0.5640.12
19_D96_Q0.5630.12
134_M144_I0.5590.12
3_Y87_V0.5560.12
38_K68_H0.5420.12
47_E84_Q0.5420.12
37_E86_L0.5400.11
137_I140_K0.5360.11
96_Q139_I0.5360.11
88_I140_K0.5340.11
51_Q120_K0.5310.11
56_K60_G0.5250.11
7_F85_K0.5240.11
13_L74_S0.5220.11
18_K66_M0.5170.11
36_A50_E0.5160.11
42_N66_M0.5160.11
103_E117_K0.5150.11
10_L106_I0.5130.11
53_K118_Q0.5120.11
82_H129_A0.5100.11
64_Q103_E0.5060.11
44_S111_F0.5030.11
90_K140_K0.5020.11
19_D55_K0.5010.11
5_F105_N0.5000.11
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3ajwA 2 0.9116 99.9 0.56 Contact Map
3k29A 1 0.9796 99.4 0.71 Contact Map
4mh6A 1 0.898 14.4 0.944 Contact Map
3ojaB 1 0.7755 9 0.949 Contact Map
4jpsB 1 0.7415 8.5 0.95 Contact Map
4nswA 2 0.9116 6.4 0.953 Contact Map
2q12A 2 0.7483 4.9 0.955 Contact Map
4p3fA 2 0.4082 4.8 0.955 Contact Map
2yy0A 6 0.3537 4.2 0.957 Contact Map
1pd7B 1 0.1633 3.9 0.957 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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