GREMLIN Database
RS13 - 30S ribosomal protein S13
UniProt: P20282 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 121 (118)
Sequences: 2396 (1006)
Seq/√Len: 92.6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
43_T52_E5.1151.00
80_L87_R4.1381.00
101_N104_N3.7231.00
37_A59_I2.6421.00
15_V45_V2.6161.00
29_T63_L2.5821.00
68_D71_R2.3801.00
89_I93_R2.2571.00
16_V31_Q2.1871.00
16_V41_E2.1521.00
52_E55_K2.1321.00
36_E59_I2.1161.00
72_E76_N2.0801.00
29_T32_Q2.0531.00
115_T118_N1.9821.00
32_Q36_E1.9561.00
15_V48_L1.8601.00
18_S45_V1.8171.00
20_T27_R1.7741.00
9_I18_S1.7521.00
59_I62_K1.7491.00
84_G92_R1.7111.00
35_K41_E1.6791.00
17_I20_T1.6251.00
38_G55_K1.6181.00
64_K72_E1.5751.00
16_V27_R1.5611.00
8_D11_R1.5451.00
12_D46_R1.5361.00
60_I65_V1.5001.00
14_R42_D1.4801.00
28_T32_Q1.4491.00
15_V39_V1.4461.00
31_Q41_E1.3880.99
58_D62_K1.3860.99
2_A45_V1.3410.99
40_S43_T1.3250.99
107_R111_G1.2980.99
75_L78_K1.2660.99
27_R30_A1.2440.98
81_I92_R1.2340.98
27_R31_Q1.2310.98
57_R61_D1.2010.98
49_T52_E1.1900.98
31_Q35_K1.1840.98
113_R116_V1.1760.98
80_L85_S1.1740.98
51_E55_K1.1690.98
14_R44_R1.1490.97
5_A57_R1.1490.97
25_I60_I1.1170.97
17_I27_R1.1060.97
79_R87_R1.0990.97
23_F73_V1.0960.97
74_S78_K1.0860.96
15_V34_L1.0790.96
96_P106_A1.0710.96
59_I63_L1.0670.96
11_R18_S1.0340.95
84_G89_I1.0310.95
4_I53_L1.0170.95
2_A9_I1.0140.95
78_K82_E0.9900.94
58_D61_D0.9240.92
32_Q35_K0.8870.90
97_V109_R0.8800.90
30_A34_L0.8800.90
16_V30_A0.8780.89
43_T47_D0.8610.88
32_Q63_L0.8350.87
48_L53_L0.8340.87
18_S21_Y0.8190.86
5_A60_I0.8090.85
23_F70_R0.8080.85
33_V59_I0.8010.85
9_I45_V0.7980.84
13_K21_Y0.7850.83
15_V43_T0.7790.83
7_V66_E0.7720.82
73_V77_I0.7580.81
87_R98_R0.7560.81
55_K58_D0.7530.81
57_R75_L0.7490.80
10_P21_Y0.7480.80
2_A53_L0.7250.78
54_G58_D0.7220.78
36_E62_K0.7180.78
11_R46_R0.7180.78
16_V42_D0.7170.78
34_L56_I0.7150.77
50_E54_G0.7130.77
113_R117_A0.7090.77
39_V43_T0.7080.77
20_T29_T0.7070.77
66_E70_R0.7070.77
93_R101_N0.6870.74
5_A65_V0.6840.74
11_R53_L0.6760.73
6_G84_G0.6750.73
41_E56_I0.6740.73
8_D115_T0.6720.73
24_G69_L0.6680.72
48_L71_R0.6650.72
10_P13_K0.6620.72
50_E53_L0.6500.70
15_V44_R0.6470.70
3_R107_R0.6460.70
14_R40_S0.6430.70
81_I94_G0.6400.69
6_G66_E0.6370.69
85_S89_I0.6350.69
112_P116_V0.6310.68
48_L68_D0.6270.68
8_D40_S0.6240.67
96_P105_N0.6190.67
88_G91_H0.6160.66
5_A61_D0.6140.66
7_V47_D0.6120.66
78_K81_I0.6100.65
2_A93_R0.6080.65
94_G97_V0.6060.65
14_R21_Y0.6040.65
12_D44_R0.5970.64
8_D54_G0.5970.64
4_I9_I0.5930.63
75_L103_K0.5920.63
69_L102_S0.5900.63
28_T31_Q0.5890.63
23_F64_K0.5880.63
46_R62_K0.5880.63
69_L72_E0.5810.62
33_V63_L0.5810.62
31_Q42_D0.5800.62
6_G104_N0.5790.61
46_R61_D0.5770.61
8_D83_I0.5730.61
44_R97_V0.5690.60
37_A56_I0.5650.60
61_D113_R0.5620.59
80_L88_G0.5590.59
86_Y96_P0.5580.59
11_R15_V0.5560.58
85_S97_V0.5510.58
3_R111_G0.5510.58
61_D118_N0.5500.58
8_D94_G0.5500.58
9_I16_V0.5460.57
11_R56_I0.5440.57
104_N114_R0.5430.57
46_R58_D0.5430.57
56_I98_R0.5420.56
94_G112_P0.5400.56
16_V34_L0.5390.56
14_R34_L0.5360.56
22_I86_Y0.5360.56
34_L39_V0.5330.55
37_A58_D0.5330.55
54_G61_D0.5310.55
66_E96_P0.5310.55
49_T72_E0.5300.55
81_I103_K0.5260.54
13_K110_K0.5210.54
36_E60_I0.5180.53
29_T59_I0.5170.53
86_Y91_H0.5160.53
10_P70_R0.5150.53
105_N108_T0.5100.52
3_R8_D0.5100.52
55_K62_K0.5100.52
53_L75_L0.5090.52
21_Y103_K0.5090.52
86_Y93_R0.5080.52
69_L96_P0.5080.52
36_E55_K0.5070.52
2_A75_L0.5020.51
4_I51_E0.5000.51
43_T49_T0.5000.51
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4rb5M 1 0.9917 100 0.054 Contact Map
4bpeM 1 0.9752 100 0.072 Contact Map
3j7aS 1 0.8512 100 0.073 Contact Map
3j60S 1 0.9752 100 0.079 Contact Map
3zeyM 1 0.9752 100 0.079 Contact Map
3j20O 1 0.9835 100 0.08 Contact Map
3j38S 1 0.8926 100 0.099 Contact Map
4tp8M 1 0.9421 100 0.109 Contact Map
4ujpT 1 0.9091 100 0.116 Contact Map
3bbnM 1 0.8182 100 0.175 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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