SP4B - BACSU - GREMLIN Contacts

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SP4B - SpoIVB peptidase

UniProt:	P17896	Sequences: MPDNIRKAVGLILLVSLLSVGLCKPLKEYLLIPTQMRVFETQTQAIETSLSVNAQTSESSEAFTVKKDPHEIKVTGKKSGESELVYDLAGFPIKKTKVHVLPDLKVIPGGQSIGVKLHSVGVLVVGFHQINTSEGKKSPGETAGIEAGDIIIEMNGQKIEKMNDVAPFIQKAGKTGESLDLLIKRDKQKIKTKLIPEKDEGEGKYRIGLYIRDSAAGIGTMTFYEPKTKKYGALGHVISDMDTKKPIVVENGEIVKSTVTSIEKGTGGNPGEKLARFSSERKTIGDINRNSPFGIFGTLHQPIQNNISDQALPVAFSTEVKKGPAEILTVIDDDKVEKFDIEIVSTTPQKFPATKGMVLKITDPRLLKETGGIVQGMSGSPIIQNGKVIGAVTHVFVNDPTSGYGVHIEWMLSEAGIDIYGKEKAS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	426 (395)
Sequences:	441 (367)
Seq/√Len:	18.5

BACSU - SP4B

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
326_E	338_K	8.353	1.00
337_E	365_R	6.450	1.00
321_K	385_N	5.383	1.00
153_E	182_L	4.971	1.00
343_I	389_I	4.891	1.00
326_E	340_D	4.853	1.00
312_L	388_V	4.627	1.00
106_V	388_V	4.048	1.00
332_D	369_E	3.972	1.00
324_P	340_D	3.921	1.00
319_E	387_K	3.807	1.00
349_Q	410_W	3.772	1.00
346_T	407_H	3.502	1.00
237_V	246_P	3.151	0.99
212_R	242_D	3.144	0.99
169_I	207_I	3.090	0.99
112_S	259_V	3.006	0.99
319_E	385_N	2.772	0.98
106_V	314_V	2.756	0.98
312_L	383_I	2.748	0.98
145_I	181_L	2.635	0.98
352_P	410_W	2.554	0.97
154_M	165_V	2.534	0.97
273_K	330_V	2.472	0.96
349_Q	352_P	2.408	0.96
206_R	339_F	2.400	0.96
210_Y	273_K	2.186	0.93
315_A	389_I	2.143	0.92
172_A	176_G	2.128	0.92
210_Y	330_V	1.978	0.88
132_T	135_G	1.967	0.88
119_S	247_I	1.956	0.88
80_G	100_V	1.948	0.88
212_R	243_T	1.923	0.87
233_A	239_S	1.922	0.87
183_I	192_T	1.914	0.87
361_I	392_V	1.892	0.86
158_K	310_Q	1.882	0.86
165_V	211_I	1.880	0.86
212_R	240_D	1.867	0.85
106_V	408_I	1.864	0.85
356_G	410_W	1.855	0.85
131_N	200_E	1.845	0.85
408_I	412_L	1.844	0.84
218_I	334_D	1.842	0.84
115_V	289_R	1.823	0.84
218_I	409_E	1.818	0.84
98_V	361_I	1.809	0.83
222_T	391_A	1.796	0.83
154_M	179_L	1.790	0.83
231_Y	286_D	1.770	0.82
102_P	218_I	1.762	0.82
91_F	346_T	1.761	0.82
128_H	275_A	1.729	0.80
333_D	369_E	1.721	0.80
199_D	202_E	1.706	0.79
210_Y	237_V	1.704	0.79
237_V	330_V	1.699	0.79
344_V	360_K	1.695	0.79
108_P	311_A	1.665	0.78
178_S	193_K	1.662	0.78
117_L	122_V	1.661	0.78
139_P	216_A	1.625	0.76
11_L	102_P	1.604	0.75
313_P	386_G	1.590	0.74
159_I	165_V	1.567	0.73
233_A	295_I	1.560	0.73
405_G	408_I	1.550	0.72
177_E	310_Q	1.537	0.72
180_D	191_K	1.536	0.72
237_V	273_K	1.526	0.71
140_G	144_G	1.514	0.71
140_G	162_M	1.511	0.70
123_L	272_E	1.489	0.69
357_M	405_G	1.481	0.69
225_E	228_T	1.472	0.68
332_D	335_K	1.469	0.68
122_V	249_V	1.468	0.68
328_L	336_V	1.465	0.68
360_K	369_E	1.457	0.67
108_P	312_L	1.444	0.67
139_P	143_A	1.443	0.67
155_N	177_E	1.437	0.66
154_M	181_L	1.431	0.66
139_P	144_G	1.408	0.65
233_A	257_S	1.408	0.65
91_F	98_V	1.403	0.64
284_I	406_V	1.402	0.64
26_L	32_I	1.383	0.63
113_I	233_A	1.377	0.63
192_T	258_T	1.363	0.62
388_V	408_I	1.358	0.62
112_S	273_K	1.356	0.62
153_E	158_K	1.356	0.62
140_G	143_A	1.353	0.62
112_S	330_V	1.345	0.61
259_V	275_A	1.339	0.61
119_S	159_I	1.335	0.60
341_I	382_I	1.332	0.60
113_I	254_I	1.319	0.60
308_S	328_L	1.319	0.60
184_K	248_V	1.313	0.59
91_F	119_S	1.311	0.59
180_D	193_K	1.311	0.59
144_G	216_A	1.308	0.59
214_S	255_V	1.306	0.59
218_I	406_V	1.300	0.58
163_N	361_I	1.299	0.58
129_Q	141_E	1.287	0.58
151_I	183_I	1.279	0.57
120_V	158_K	1.269	0.56
106_V	312_L	1.267	0.56
164_D	167_P	1.257	0.56
10_G	13_L	1.257	0.56
407_H	410_W	1.251	0.55
122_V	159_I	1.237	0.55
112_S	414_E	1.231	0.54
81_E	389_I	1.228	0.54
335_K	365_R	1.227	0.54
232_G	408_I	1.218	0.53
29_Y	218_I	1.215	0.53
215_A	356_G	1.214	0.53
119_S	314_V	1.213	0.53
130_I	197_E	1.207	0.53
238_I	328_L	1.206	0.53
39_F	339_F	1.202	0.52
185_R	374_V	1.196	0.52
203_G	413_S	1.196	0.52
108_P	296_F	1.196	0.52
119_S	213_D	1.194	0.52
328_L	338_K	1.182	0.51
154_M	251_N	1.180	0.51
159_I	248_V	1.175	0.51
240_D	243_T	1.175	0.51
334_D	388_V	1.164	0.50
202_E	253_E	1.164	0.50
303_I	388_V	1.161	0.50
41_T	86_Y	1.153	0.49
165_V	181_L	1.153	0.49
169_I	172_A	1.147	0.49
279_S	319_E	1.143	0.49
259_V	284_I	1.140	0.48
127_F	169_I	1.135	0.48
81_E	99_H	1.127	0.48
140_G	277_F	1.116	0.47
84_L	389_I	1.116	0.47
109_G	352_P	1.104	0.46
231_Y	275_A	1.104	0.46
221_M	272_E	1.103	0.46
342_E	360_K	1.099	0.46
91_F	361_I	1.099	0.46
341_I	389_I	1.085	0.45
152_I	184_K	1.085	0.45
116_K	253_E	1.074	0.44
176_G	298_T	1.072	0.44
122_V	165_V	1.070	0.44
210_Y	275_A	1.067	0.44
262_I	273_K	1.063	0.44
152_I	189_K	1.062	0.44
145_I	183_I	1.056	0.43
211_I	267_G	1.053	0.43
214_S	277_F	1.053	0.43
140_G	216_A	1.042	0.42
225_E	230_K	1.042	0.42
348_P	407_H	1.040	0.42
162_M	233_A	1.040	0.42
119_S	123_L	1.038	0.42
14_L	291_S	1.038	0.42
315_A	319_E	1.038	0.42
267_G	389_I	1.038	0.42
340_D	365_R	1.036	0.42
108_P	211_I	1.023	0.41
210_Y	317_S	1.017	0.41
193_K	389_I	1.017	0.41
207_I	287_I	1.016	0.41
145_I	209_L	1.016	0.41
113_I	336_V	1.014	0.41
12_I	16_S	1.013	0.41
104_L	314_V	1.011	0.41
210_Y	246_P	1.008	0.40
111_Q	328_L	0.990	0.39
291_S	361_I	0.988	0.39
141_E	247_I	0.986	0.39
270_P	325_A	0.985	0.39
231_Y	259_V	0.983	0.39
152_I	249_V	0.981	0.39
211_I	402_S	0.975	0.38
399_D	402_S	0.974	0.38
354_T	407_H	0.970	0.38
215_A	262_I	0.966	0.38
113_I	262_I	0.963	0.38
48_T	51_S	0.963	0.38
106_V	113_I	0.959	0.37
41_T	80_G	0.956	0.37
211_I	408_I	0.954	0.37
316_F	319_E	0.952	0.37
360_K	383_I	0.951	0.37
116_K	214_S	0.950	0.37
188_Q	341_I	0.947	0.37
275_A	402_S	0.947	0.37
102_P	221_M	0.945	0.37
109_G	329_T	0.942	0.37
109_G	380_S	0.941	0.36
127_F	140_G	0.941	0.36
116_K	150_I	0.937	0.36
105_K	311_A	0.927	0.36
51_S	71_E	0.925	0.36
162_M	214_S	0.923	0.35
216_A	224_Y	0.921	0.35
259_V	344_V	0.919	0.35
17_L	47_E	0.919	0.35
199_D	206_R	0.912	0.35
380_S	396_F	0.911	0.35
386_G	399_D	0.908	0.35
133_S	266_T	0.908	0.35
336_V	396_F	0.907	0.35
136_K	155_N	0.907	0.35
284_I	383_I	0.904	0.34
296_F	316_F	0.903	0.34
98_V	209_L	0.903	0.34
242_D	357_M	0.900	0.34
255_V	316_F	0.896	0.34
144_G	223_F	0.895	0.34
291_S	296_F	0.894	0.34
300_H	335_K	0.894	0.34
207_I	233_A	0.892	0.34
246_P	330_V	0.891	0.34
170_Q	204_K	0.888	0.33
78_K	130_I	0.887	0.33
36_M	96_T	0.886	0.33
207_I	388_V	0.885	0.33
279_S	320_V	0.884	0.33
146_E	357_M	0.877	0.33
241_M	316_F	0.876	0.33
70_H	171_K	0.876	0.33
108_P	319_E	0.876	0.33
162_M	239_S	0.873	0.33
247_I	356_G	0.861	0.32
341_I	359_L	0.860	0.32
169_I	189_K	0.860	0.32
264_K	387_K	0.857	0.32
117_L	211_I	0.853	0.32
160_E	164_D	0.852	0.31
189_K	195_I	0.851	0.31
162_M	216_A	0.849	0.31
322_K	340_D	0.848	0.31
327_I	405_G	0.844	0.31
314_V	408_I	0.842	0.31
259_V	413_S	0.842	0.31
181_L	288_N	0.842	0.31
104_L	223_F	0.841	0.31
155_N	179_L	0.841	0.31
41_T	96_T	0.836	0.31
41_T	51_S	0.831	0.30
346_T	361_I	0.828	0.30
177_E	383_I	0.825	0.30
141_E	215_A	0.824	0.30
38_V	181_L	0.821	0.30
328_L	383_I	0.821	0.30
273_K	329_T	0.818	0.30
312_L	328_L	0.816	0.30
262_I	336_V	0.812	0.29
138_S	352_P	0.809	0.29
244_K	348_P	0.807	0.29
221_M	288_N	0.807	0.29
126_G	247_I	0.804	0.29
176_G	334_D	0.800	0.29
396_F	399_D	0.799	0.29
237_V	329_T	0.796	0.29
338_K	383_I	0.794	0.28
37_R	99_H	0.794	0.28
89_A	239_S	0.792	0.28
117_L	145_I	0.791	0.28
135_G	254_I	0.789	0.28
43_T	46_I	0.787	0.28
269_N	361_I	0.786	0.28
15_V	161_K	0.783	0.28
298_T	302_P	0.780	0.28
265_G	272_E	0.779	0.28
295_I	305_N	0.779	0.28
349_Q	356_G	0.779	0.28
212_R	371_G	0.777	0.28
221_M	257_S	0.777	0.28
254_I	287_I	0.776	0.28
113_I	215_A	0.774	0.27
232_G	370_T	0.772	0.27
295_I	409_E	0.771	0.27
141_E	211_I	0.767	0.27
172_A	196_P	0.767	0.27
72_I	388_V	0.767	0.27
230_K	312_L	0.766	0.27
98_V	182_L	0.764	0.27
296_F	327_I	0.759	0.27
119_S	196_P	0.756	0.27
138_S	410_W	0.755	0.27
246_P	273_K	0.755	0.27
202_E	269_N	0.754	0.26
232_G	374_V	0.753	0.26
274_L	356_G	0.750	0.26
400_P	410_W	0.747	0.26
403_G	411_M	0.745	0.26
313_P	356_G	0.741	0.26
21_G	202_E	0.740	0.26
210_Y	244_K	0.740	0.26
78_K	365_R	0.738	0.26
140_G	214_S	0.737	0.26
262_I	333_D	0.737	0.26
287_I	315_A	0.736	0.26
38_V	296_F	0.735	0.26
160_E	287_I	0.734	0.25
273_K	339_F	0.734	0.25
101_L	335_K	0.732	0.25
345_S	359_L	0.731	0.25
15_V	23_C	0.731	0.25
116_K	140_G	0.730	0.25
116_K	144_G	0.730	0.25
241_M	247_I	0.730	0.25
317_S	354_T	0.729	0.25
175_T	258_T	0.727	0.25
168_F	328_L	0.724	0.25
119_S	241_M	0.723	0.25
41_T	53_N	0.720	0.25
95_K	221_M	0.719	0.25
46_I	50_L	0.718	0.25
275_A	345_S	0.715	0.25
349_Q	353_A	0.715	0.25
108_P	341_I	0.712	0.24
38_V	281_R	0.712	0.24
324_P	342_E	0.711	0.24
144_G	187_K	0.710	0.24
140_G	209_L	0.710	0.24
182_L	190_I	0.709	0.24
44_Q	300_H	0.708	0.24
90_G	295_I	0.708	0.24
151_I	358_V	0.706	0.24
152_I	182_L	0.705	0.24
216_A	277_F	0.704	0.24
113_I	232_G	0.703	0.24
162_M	407_H	0.702	0.24
224_Y	315_A	0.702	0.24
347_T	357_M	0.700	0.24
355_K	359_L	0.699	0.24
374_V	412_L	0.697	0.24
227_K	311_A	0.695	0.24
247_I	273_K	0.693	0.24
232_G	330_V	0.692	0.24
144_G	277_F	0.690	0.23
159_I	385_N	0.688	0.23
346_T	396_F	0.684	0.23
20_V	77_K	0.684	0.23
44_Q	48_T	0.681	0.23
51_S	100_V	0.681	0.23
12_I	58_E	0.680	0.23
364_P	368_K	0.679	0.23
231_Y	299_L	0.676	0.23
344_V	402_S	0.676	0.23
90_G	101_L	0.675	0.23
206_R	216_A	0.675	0.23
117_L	147_A	0.674	0.23
306_N	374_V	0.673	0.23
14_L	337_E	0.673	0.23
244_K	316_F	0.672	0.23
273_K	336_V	0.671	0.23
19_S	76_G	0.670	0.23
107_I	397_V	0.668	0.23
223_F	371_G	0.668	0.23
111_Q	226_P	0.666	0.22
298_T	332_D	0.665	0.22
44_Q	181_L	0.665	0.22
330_V	336_V	0.664	0.22
70_H	361_I	0.663	0.22
88_L	93_I	0.663	0.22
25_P	329_T	0.662	0.22
233_A	287_I	0.661	0.22
103_D	319_E	0.661	0.22
321_K	408_I	0.660	0.22
210_Y	339_F	0.660	0.22
117_L	383_I	0.659	0.22
31_L	59_S	0.657	0.22
184_K	189_K	0.657	0.22
261_S	280_E	0.657	0.22
349_Q	407_H	0.656	0.22
155_N	356_G	0.655	0.22
341_I	392_V	0.655	0.22
155_N	178_S	0.652	0.22
221_M	407_H	0.649	0.22
119_S	242_D	0.647	0.22
42_Q	79_S	0.646	0.22
159_I	266_T	0.646	0.22
161_K	197_E	0.645	0.22
180_D	364_P	0.645	0.22
198_K	281_R	0.644	0.21
99_H	364_P	0.644	0.21
230_K	298_T	0.644	0.21
165_V	415_A	0.643	0.21
89_A	275_A	0.643	0.21
119_S	317_S	0.642	0.21
242_D	367_L	0.641	0.21
104_L	308_S	0.638	0.21
242_D	383_I	0.637	0.21
41_T	46_I	0.637	0.21
128_H	354_T	0.636	0.21
123_L	396_F	0.634	0.21
183_I	190_I	0.634	0.21
103_D	156_G	0.633	0.21
169_I	257_S	0.633	0.21
169_I	196_P	0.632	0.21
38_V	72_I	0.631	0.21
273_K	317_S	0.631	0.21
157_Q	168_F	0.630	0.21
85_V	207_I	0.628	0.21
379_G	384_Q	0.628	0.21
378_S	384_Q	0.628	0.21
128_H	402_S	0.628	0.21
126_G	216_A	0.626	0.21
215_A	293_F	0.626	0.21
46_I	164_D	0.626	0.21
169_I	191_K	0.625	0.21
378_S	381_P	0.625	0.21
127_F	339_F	0.625	0.21
124_V	145_I	0.624	0.21
106_V	261_S	0.622	0.21
97_K	119_S	0.621	0.21
55_Q	357_M	0.621	0.21
127_F	162_M	0.620	0.20
218_I	374_V	0.620	0.20
223_F	398_N	0.620	0.20
213_D	327_I	0.620	0.20
176_G	196_P	0.620	0.20
23_C	163_N	0.619	0.20
253_E	283_T	0.618	0.20
335_K	385_N	0.617	0.20
83_E	340_D	0.616	0.20
130_I	261_S	0.616	0.20
116_K	162_M	0.614	0.20
126_G	357_M	0.613	0.20
43_T	73_K	0.613	0.20
105_K	155_N	0.611	0.20
299_L	345_S	0.609	0.20
23_C	26_L	0.609	0.20
93_I	374_V	0.608	0.20
262_I	374_V	0.608	0.20
32_I	385_N	0.608	0.20
231_Y	237_V	0.607	0.20
74_V	337_E	0.606	0.20
331_I	369_E	0.606	0.20
150_I	218_I	0.604	0.20
314_V	385_N	0.602	0.20
96_T	232_G	0.602	0.20
266_T	385_N	0.601	0.20
91_F	137_K	0.601	0.20
231_Y	295_I	0.600	0.20
24_K	116_K	0.600	0.20
154_M	228_T	0.600	0.20
137_K	254_I	0.598	0.20
194_L	299_L	0.595	0.19
176_G	195_I	0.594	0.19
145_I	331_I	0.593	0.19
76_G	80_G	0.592	0.19
88_L	256_K	0.591	0.19
190_I	314_V	0.590	0.19
140_G	150_I	0.589	0.19
125_V	139_P	0.588	0.19
182_L	191_K	0.588	0.19
181_L	307_I	0.587	0.19
45_A	52_V	0.587	0.19
354_T	397_V	0.586	0.19
273_K	356_G	0.586	0.19
23_C	37_R	0.585	0.19
254_I	277_F	0.585	0.19
152_I	264_K	0.581	0.19
384_Q	391_A	0.580	0.19
216_A	255_V	0.579	0.19
152_I	158_K	0.578	0.19
43_T	59_S	0.577	0.19
46_I	72_I	0.577	0.19
363_D	371_G	0.576	0.19
109_G	396_F	0.576	0.19
107_I	224_Y	0.575	0.19
144_G	253_E	0.573	0.19
84_L	332_D	0.573	0.19
74_V	249_V	0.573	0.19
287_I	350_K	0.569	0.18
197_E	248_V	0.569	0.18
228_T	300_H	0.568	0.18
91_F	172_A	0.568	0.18
239_S	347_T	0.567	0.18
195_I	300_H	0.567	0.18
113_I	221_M	0.566	0.18
41_T	101_L	0.566	0.18
157_Q	374_V	0.564	0.18
74_V	99_H	0.563	0.18
207_I	288_N	0.563	0.18
133_S	137_K	0.562	0.18
227_K	339_F	0.561	0.18
404_Y	411_M	0.561	0.18
140_G	145_I	0.560	0.18
24_K	28_E	0.560	0.18
109_G	414_E	0.560	0.18
22_L	389_I	0.559	0.18
11_L	203_G	0.559	0.18
87_D	179_L	0.558	0.18
317_S	409_E	0.556	0.18
112_S	329_T	0.554	0.18
75_T	79_S	0.554	0.18
143_A	216_A	0.553	0.18
150_I	277_F	0.553	0.18
202_E	257_S	0.552	0.18
144_G	255_V	0.552	0.18
165_V	267_G	0.551	0.18
275_A	354_T	0.551	0.18
162_M	339_F	0.551	0.18
230_K	388_V	0.550	0.18
109_G	349_Q	0.550	0.18
316_F	406_V	0.549	0.18
351_F	355_K	0.549	0.18
127_F	237_V	0.549	0.18
132_T	176_G	0.549	0.18
116_K	260_T	0.549	0.18
133_S	321_K	0.546	0.18
104_L	414_E	0.546	0.18
262_I	330_V	0.545	0.18
26_L	314_V	0.544	0.18
329_T	349_Q	0.544	0.18
105_K	130_I	0.544	0.18
358_V	380_S	0.544	0.18
123_L	292_P	0.544	0.18
199_D	204_K	0.543	0.18
393_T	403_G	0.543	0.18
194_L	347_T	0.540	0.17
25_P	237_V	0.540	0.17
331_I	416_G	0.539	0.17
254_I	328_L	0.537	0.17
239_S	407_H	0.537	0.17
101_L	316_F	0.537	0.17
46_I	181_L	0.537	0.17
112_S	257_S	0.535	0.17
119_S	206_R	0.534	0.17
155_N	383_I	0.533	0.17
115_V	254_I	0.533	0.17
381_P	384_Q	0.532	0.17
125_V	261_S	0.532	0.17
321_K	387_K	0.531	0.17
146_E	289_R	0.530	0.17
100_V	126_G	0.530	0.17
40_E	175_T	0.528	0.17
15_V	32_I	0.525	0.17
17_L	340_D	0.525	0.17
226_P	231_Y	0.524	0.17
237_V	275_A	0.524	0.17
83_E	280_E	0.524	0.17
123_L	410_W	0.524	0.17
120_V	167_P	0.523	0.17
38_V	70_H	0.523	0.17
139_P	209_L	0.521	0.17
395_V	403_G	0.520	0.17
17_L	195_I	0.520	0.17
347_T	397_V	0.518	0.17
116_K	216_A	0.518	0.17
48_T	52_V	0.518	0.17
157_Q	202_E	0.517	0.17
124_V	169_I	0.516	0.17
44_Q	56_T	0.516	0.17
20_V	124_V	0.515	0.17
36_M	303_I	0.514	0.17
199_D	374_V	0.514	0.17
105_K	195_I	0.514	0.17
94_K	245_K	0.514	0.17
357_M	389_I	0.514	0.17
104_L	108_P	0.514	0.17
210_Y	231_Y	0.513	0.16
194_L	260_T	0.513	0.16
303_I	306_N	0.513	0.16
275_A	356_G	0.512	0.16
129_Q	210_Y	0.511	0.16
245_K	299_L	0.511	0.16
329_T	380_S	0.511	0.16
275_A	325_A	0.511	0.16
46_I	73_K	0.509	0.16
237_V	339_F	0.508	0.16
94_K	212_R	0.508	0.16
317_S	339_F	0.508	0.16
358_V	396_F	0.507	0.16
361_I	383_I	0.506	0.16
20_V	23_C	0.505	0.16
314_V	412_L	0.505	0.16
74_V	198_K	0.503	0.16
115_V	412_L	0.503	0.16
314_V	324_P	0.502	0.16
106_V	267_G	0.502	0.16
215_A	407_H	0.500	0.16
216_A	257_S	0.500	0.16

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4jj0A	4	0.3803	99.3	0.918	Contact Map
3i18A	1	0.223	99.2	0.921	Contact Map
2p3wA	2	0.2629	99.1	0.925	Contact Map
2l97A	1	0.2958	99	0.926	Contact Map
4o06A	1	0.2324	99	0.927	Contact Map
2zpmA	2	0.1854	99	0.928	Contact Map
4l8nA	2	0.3404	99	0.928	Contact Map
3wkmA	1	0.3944	99	0.928	Contact Map
2pzdA	2	0.2371	98.9	0.929	Contact Map
3cyyA	2	0.1831	98.8	0.932	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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