RIBBA - BACSU - GREMLIN Contacts

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RIBBA - Riboflavin biosynthesis protein RibBA

UniProt:	P17620	Sequences: MFHPIEEALDALKKGEVIIVVDDEDRENEGDFVALAEHATPEVINFMATHGRGLICTPLSEEIADRLDLHPMVEHNTDSHHTAFTVSIDHRETKTGISAQERSFTVQALLDSKSVPSDFQRPGHIFPLIAKKGGVLKRAGHTEAAVDLAEACGSPGAGVICEIMNEDGTMARVPELIEIAKKHQLKMITIKDLIQYRYNLTTLVEREVDITLPTDFGTFKVYGYTNEVDGKEHVAFVMGDVPFGEEPVLVRVHSECLTGDVFGSHRCDCGPQLHAALNQIAAEGRGVLLYLRQEGRGIGLINKLKAYKLQEQGYDTVEANEALGFLPDLRNYGIGAQILRDLGVRNMKLLTNNPRKIAGLEGYGLSISERVPLQMEAKEHNKKYLQTKMNKLGHLLHF	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	398 (370)
Sequences:	2618 (1410)
Seq/√Len:	73.3

BACSU - RIBBA

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
224_Y	341_D	4.820	1.00
11_A	16_E	4.723	1.00
48_A	55_I	4.071	1.00
63_I	66_R	3.955	1.00
165_N	175_E	3.566	1.00
209_D	220_K	3.493	1.00
346_N	366_S	3.089	1.00
206_R	222_Y	2.929	1.00
280_I	288_L	2.864	1.00
206_R	341_D	2.853	1.00
277_L	288_L	2.749	1.00
48_A	164_M	2.732	1.00
238_M	281_A	2.708	1.00
7_E	186_K	2.689	1.00
36_A	157_A	2.660	1.00
11_A	186_K	2.657	1.00
139_A	194_I	2.631	1.00
145_A	158_G	2.592	1.00
314_Y	322_A	2.590	1.00
255_E	292_R	2.516	1.00
32_F	179_I	2.461	1.00
57_T	109_L	2.451	1.00
3_H	7_E	2.440	1.00
114_S	119_F	2.424	1.00
65_D	129_I	2.418	1.00
37_E	155_P	2.409	1.00
61_E	132_K	2.364	1.00
165_N	169_T	2.350	1.00
34_A	43_V	2.347	1.00
112_S	155_P	2.334	1.00
10_D	14_K	2.333	1.00
226_N	229_D	2.331	1.00
8_A	188_I	2.304	1.00
104_F	108_A	2.300	1.00
59_L	64_A	2.269	1.00
179_I	183_H	2.259	1.00
88_I	109_L	2.207	1.00
344_V	347_M	2.168	1.00
348_K	369_E	2.126	1.00
211_T	218_T	2.122	1.00
61_E	65_D	2.078	1.00
287_V	344_V	2.064	1.00
64_A	129_I	2.048	1.00
209_D	222_Y	2.029	1.00
35_L	154_S	2.002	1.00
4_P	7_E	1.984	1.00
38_H	154_S	1.981	1.00
205_E	227_E	1.976	1.00
205_E	225_T	1.906	1.00
32_F	51_G	1.906	1.00
61_E	129_I	1.881	1.00
222_Y	237_V	1.876	1.00
54_L	97_I	1.831	1.00
348_K	371_V	1.824	1.00
44_I	106_V	1.790	1.00
106_V	125_I	1.787	1.00
177_I	187_M	1.756	1.00
211_T	220_K	1.749	1.00
177_I	181_K	1.748	1.00
64_A	69_L	1.746	1.00
62_E	132_K	1.719	1.00
278_N	282_A	1.660	1.00
275_A	278_N	1.646	1.00
49_T	52_R	1.643	1.00
244_G	285_R	1.631	1.00
347_M	365_L	1.622	0.99
210_I	221_V	1.621	0.99
33_V	160_I	1.611	0.99
21_V	189_T	1.608	0.99
104_F	107_Q	1.600	0.99
223_G	301_I	1.582	0.99
247_P	346_N	1.581	0.99
108_A	119_F	1.574	0.99
215_D	274_H	1.559	0.99
210_I	304_L	1.552	0.99
302_N	325_F	1.524	0.99
44_I	55_I	1.523	0.99
308_K	312_Q	1.522	0.99
71_P	129_I	1.516	0.99
247_P	368_S	1.514	0.99
12_L	35_L	1.508	0.99
87_S	126_F	1.504	0.99
46_F	183_H	1.488	0.99
178_E	181_K	1.467	0.99
283_E	348_K	1.462	0.99
241_V	248_V	1.456	0.99
90_H	108_A	1.455	0.99
57_T	88_I	1.451	0.99
19_I	180_A	1.448	0.99
40_T	43_V	1.447	0.99
49_T	166_E	1.446	0.99
10_D	13_K	1.445	0.99
20_V	188_I	1.430	0.99
246_E	285_R	1.407	0.99
108_A	111_D	1.395	0.98
321_E	327_P	1.395	0.98
245_E	285_R	1.386	0.98
206_R	224_Y	1.377	0.98
173_V	187_M	1.376	0.98
148_L	188_I	1.354	0.98
20_V	144_A	1.347	0.98
44_I	159_V	1.347	0.98
60_S	156_G	1.344	0.98
18_I	148_L	1.325	0.98
163_I	171_A	1.312	0.98
5_I	193_L	1.310	0.98
55_I	164_M	1.305	0.98
54_L	126_F	1.305	0.98
5_I	188_I	1.283	0.97
175_E	178_E	1.281	0.97
12_L	18_I	1.279	0.97
17_V	34_A	1.268	0.97
206_R	209_D	1.265	0.97
145_A	160_I	1.261	0.97
333_G	362_G	1.256	0.97
21_V	187_M	1.244	0.97
17_V	32_F	1.243	0.97
21_V	173_V	1.241	0.97
110_L	157_A	1.232	0.97
41_P	103_S	1.220	0.96
289_L	338_I	1.219	0.96
237_V	287_V	1.218	0.96
236_F	288_L	1.204	0.96
274_H	281_A	1.203	0.96
59_L	157_A	1.202	0.96
19_I	185_L	1.197	0.96
221_V	234_V	1.195	0.96
131_K	137_K	1.189	0.96
208_V	304_L	1.189	0.96
257_L	262_F	1.182	0.96
103_S	107_Q	1.171	0.95
49_T	182_K	1.170	0.95
207_E	225_T	1.167	0.95
216_F	278_N	1.153	0.95
279_Q	350_L	1.141	0.95
329_L	357_I	1.140	0.95
248_V	285_R	1.132	0.94
111_D	114_S	1.127	0.94
9_L	12_L	1.127	0.94
55_I	161_C	1.126	0.94
78_D	120_Q	1.122	0.94
8_A	20_V	1.116	0.94
136_L	197_R	1.115	0.94
361_E	366_S	1.115	0.94
249_L	371_V	1.113	0.94
90_H	93_T	1.113	0.94
9_L	151_A	1.113	0.94
32_F	163_I	1.112	0.94
63_I	155_P	1.109	0.94
45_N	52_R	1.102	0.94
94_K	101_E	1.101	0.94
233_H	292_R	1.099	0.94
39_A	44_I	1.090	0.93
355_R	359_G	1.089	0.93
3_H	181_K	1.082	0.93
208_V	308_K	1.067	0.93
247_P	369_E	1.065	0.92
241_V	244_G	1.063	0.92
58_P	146_V	1.056	0.92
147_D	197_R	1.056	0.92
279_Q	283_E	1.055	0.92
249_L	283_E	1.049	0.92
91_R	120_Q	1.046	0.92
279_Q	371_V	1.044	0.92
335_G	362_G	1.044	0.92
11_A	14_K	1.042	0.92
79_S	120_Q	1.039	0.91
165_N	171_A	1.035	0.91
180_A	185_L	1.035	0.91
273_L	288_L	1.031	0.91
214_T	219_F	1.030	0.91
50_H	182_K	1.027	0.91
335_G	365_L	1.025	0.91
16_E	186_K	1.025	0.91
39_A	103_S	1.022	0.91
346_N	368_S	1.016	0.91
92_E	104_F	1.015	0.91
12_L	149_A	1.008	0.90
213_P	218_T	1.007	0.90
149_A	157_A	1.001	0.90
165_N	182_K	0.976	0.89
17_V	43_V	0.972	0.89
197_R	201_T	0.971	0.88
33_V	141_H	0.968	0.88
242_P	245_E	0.966	0.88
93_T	101_E	0.966	0.88
108_A	114_S	0.965	0.88
60_S	63_I	0.964	0.88
32_F	183_H	0.964	0.88
173_V	189_T	0.963	0.88
60_S	64_A	0.963	0.88
298_I	320_N	0.960	0.88
225_T	232_E	0.958	0.88
244_G	248_V	0.956	0.88
19_I	163_I	0.956	0.88
45_N	51_G	0.951	0.87
58_P	160_I	0.950	0.87
215_D	271_P	0.947	0.87
48_A	51_G	0.947	0.87
318_E	321_E	0.946	0.87
58_P	145_A	0.943	0.87
357_I	367_I	0.940	0.87
151_A	193_L	0.939	0.87
235_A	287_V	0.939	0.87
89_D	119_F	0.938	0.87
41_P	100_Q	0.934	0.86
139_A	333_G	0.932	0.86
48_A	54_L	0.932	0.86
30_G	176_L	0.931	0.86
77_T	120_Q	0.931	0.86
39_A	43_V	0.922	0.86
26_R	31_D	0.921	0.86
34_A	39_A	0.921	0.86
308_K	311_E	0.918	0.85
78_D	83_A	0.917	0.85
133_G	137_K	0.912	0.85
335_G	347_M	0.908	0.85
89_D	93_T	0.908	0.85
215_D	265_H	0.907	0.85
66_R	114_S	0.906	0.85
32_F	185_L	0.904	0.85
245_E	346_N	0.901	0.84
235_A	342_L	0.897	0.84
256_C	269_C	0.895	0.84
241_V	285_R	0.894	0.84
57_T	106_V	0.894	0.84
106_V	159_V	0.889	0.84
44_I	47_M	0.887	0.83
223_G	234_V	0.885	0.83
279_Q	282_A	0.878	0.83
163_I	176_L	0.877	0.83
71_P	83_A	0.874	0.83
61_E	64_A	0.872	0.82
359_G	362_G	0.870	0.82
332_Y	357_I	0.870	0.82
115_V	118_D	0.868	0.82
302_N	305_K	0.868	0.82
52_R	164_M	0.868	0.82
93_T	119_F	0.866	0.82
339_L	344_V	0.864	0.82
325_F	329_L	0.862	0.82
59_L	109_L	0.861	0.82
68_D	121_R	0.861	0.82
190_I	193_L	0.859	0.81
37_E	154_S	0.857	0.81
256_C	267_C	0.856	0.81
110_L	155_P	0.855	0.81
151_A	196_Y	0.854	0.81
139_A	335_G	0.852	0.81
233_H	338_I	0.849	0.81
246_E	346_N	0.846	0.80
240_D	244_G	0.842	0.80
54_L	87_S	0.838	0.80
236_F	277_L	0.838	0.80
203_L	334_I	0.838	0.80
3_H	186_K	0.837	0.80
259_G	269_C	0.837	0.80
141_H	144_A	0.836	0.80
203_L	363_Y	0.832	0.79
12_L	34_A	0.832	0.79
33_V	145_A	0.827	0.79
249_L	348_K	0.824	0.79
57_T	110_L	0.822	0.79
130_A	146_V	0.819	0.78
100_Q	169_T	0.818	0.78
3_H	189_T	0.818	0.78
173_V	177_I	0.813	0.78
141_H	190_I	0.806	0.77
90_H	119_F	0.806	0.77
329_L	355_R	0.806	0.77
347_M	362_G	0.803	0.77
337_Q	363_Y	0.803	0.77
256_C	259_G	0.800	0.77
181_K	184_Q	0.798	0.76
139_A	362_G	0.795	0.76
89_D	121_R	0.794	0.76
80_H	120_Q	0.793	0.76
27_E	31_D	0.793	0.76
215_D	263_G	0.790	0.76
340_R	345_R	0.788	0.76
309_L	320_N	0.781	0.75
203_L	337_Q	0.781	0.75
252_V	291_L	0.779	0.75
250_V	347_M	0.777	0.75
55_I	126_F	0.773	0.74
20_V	158_G	0.771	0.74
358_A	361_E	0.769	0.74
93_T	120_Q	0.767	0.74
51_G	179_I	0.767	0.74
54_L	161_C	0.764	0.73
84_F	126_F	0.764	0.73
264_S	267_C	0.761	0.73
68_D	117_S	0.759	0.73
66_R	155_P	0.756	0.73
80_H	141_H	0.756	0.73
216_F	274_H	0.755	0.72
333_G	337_Q	0.754	0.72
90_H	101_E	0.752	0.72
77_T	121_R	0.751	0.72
46_F	179_I	0.746	0.72
338_I	350_L	0.744	0.71
222_Y	235_A	0.741	0.71
180_A	187_M	0.740	0.71
262_F	273_L	0.740	0.71
136_L	147_D	0.740	0.71
194_I	197_R	0.739	0.71
262_F	290_Y	0.739	0.71
78_D	89_D	0.733	0.70
171_A	176_L	0.733	0.70
132_K	137_K	0.730	0.70
57_T	125_I	0.729	0.70
249_L	279_Q	0.728	0.70
9_L	152_C	0.726	0.69
32_F	46_F	0.726	0.69
257_L	261_V	0.725	0.69
31_D	162_E	0.723	0.69
332_Y	336_A	0.721	0.69
329_L	332_Y	0.716	0.68
50_H	183_H	0.714	0.68
333_G	359_G	0.710	0.68
223_G	232_E	0.707	0.67
88_I	119_F	0.707	0.67
296_R	299_G	0.706	0.67
214_T	217_G	0.705	0.67
31_D	82_T	0.705	0.67
78_D	81_H	0.703	0.67
259_G	290_Y	0.699	0.67
221_V	304_L	0.698	0.66
178_E	182_K	0.696	0.66
137_K	331_N	0.695	0.66
195_Q	199_N	0.695	0.66
26_R	29_E	0.695	0.66
248_V	287_V	0.690	0.66
97_I	161_C	0.688	0.65
52_R	97_I	0.686	0.65
144_A	193_L	0.684	0.65
20_V	33_V	0.684	0.65
64_A	71_P	0.683	0.65
7_E	11_A	0.682	0.65
256_C	303_K	0.682	0.65
93_T	108_A	0.681	0.65
5_I	11_A	0.680	0.64
114_S	118_D	0.676	0.64
19_I	179_I	0.675	0.64
89_D	109_L	0.668	0.63
72_M	126_F	0.668	0.63
303_K	307_Y	0.667	0.63
35_L	38_H	0.665	0.63
240_D	285_R	0.662	0.62
304_L	308_K	0.659	0.62
258_T	272_Q	0.658	0.62
51_G	54_L	0.657	0.62
57_T	89_D	0.657	0.62
350_L	373_L	0.655	0.61
259_G	267_C	0.653	0.61
62_E	66_R	0.653	0.61
27_E	162_E	0.652	0.61
275_A	279_Q	0.651	0.61
192_D	195_Q	0.651	0.61
51_G	164_M	0.651	0.61
212_L	236_F	0.650	0.61
248_V	345_R	0.650	0.61
242_P	247_P	0.650	0.61
294_E	298_I	0.648	0.61
26_R	162_E	0.647	0.61
258_T	264_S	0.646	0.60
244_G	247_P	0.643	0.60
316_T	319_A	0.641	0.60
250_V	287_V	0.641	0.60
44_I	48_A	0.639	0.60
219_F	277_L	0.638	0.59
26_R	82_T	0.638	0.59
298_I	309_L	0.636	0.59
328_D	332_Y	0.635	0.59
17_V	179_I	0.635	0.59
101_E	104_F	0.634	0.59
359_G	363_Y	0.634	0.59
191_K	195_Q	0.634	0.59
326_L	329_L	0.632	0.59
225_T	301_I	0.631	0.59
303_K	353_N	0.629	0.58
264_S	307_Y	0.628	0.58
141_H	145_A	0.626	0.58
144_A	188_I	0.626	0.58
295_G	298_I	0.625	0.58
244_G	346_N	0.623	0.58
61_E	131_K	0.622	0.58
266_R	307_Y	0.622	0.58
90_H	104_F	0.622	0.58
167_D	172_R	0.621	0.57
299_G	303_K	0.621	0.57
272_Q	307_Y	0.619	0.57
17_V	185_L	0.619	0.57
247_P	285_R	0.618	0.57
59_L	146_V	0.617	0.57
213_P	264_S	0.616	0.57
27_E	82_T	0.616	0.57
254_S	272_Q	0.616	0.57
12_L	158_G	0.614	0.57
59_L	63_I	0.614	0.57
73_V	121_R	0.612	0.56
238_M	284_G	0.611	0.56
3_H	177_I	0.611	0.56
70_H	129_I	0.610	0.56
202_T	341_D	0.609	0.56
340_R	362_G	0.608	0.56
82_T	162_E	0.608	0.56
126_F	168_G	0.606	0.56
357_I	370_R	0.605	0.55
12_L	33_V	0.604	0.55
258_T	269_C	0.602	0.55
43_V	103_S	0.601	0.55
83_A	131_K	0.600	0.55
266_R	360_L	0.599	0.55
51_G	161_C	0.599	0.55
223_G	304_L	0.596	0.54
44_I	54_L	0.596	0.54
266_R	311_E	0.596	0.54
242_P	285_R	0.595	0.54
31_D	142_T	0.592	0.54
272_Q	353_N	0.592	0.54
60_S	132_K	0.589	0.54
201_T	337_Q	0.589	0.54
94_K	172_R	0.588	0.53
222_Y	342_L	0.588	0.53
261_V	311_E	0.587	0.53
125_I	174_P	0.586	0.53
65_D	68_D	0.586	0.53
83_A	160_I	0.580	0.52
239_G	287_V	0.577	0.52
232_E	301_I	0.577	0.52
310_Q	313_G	0.577	0.52
296_R	353_N	0.575	0.52
272_Q	296_R	0.574	0.52
29_E	141_H	0.574	0.52
306_A	324_G	0.572	0.51
90_H	120_Q	0.571	0.51
93_T	104_F	0.569	0.51
101_E	108_A	0.569	0.51
50_H	166_E	0.569	0.51
76_N	82_T	0.567	0.51
136_L	198_Y	0.565	0.51
213_P	266_R	0.565	0.51
280_I	286_G	0.563	0.50
69_L	85_T	0.563	0.50
242_P	246_E	0.563	0.50
320_N	323_L	0.563	0.50
29_E	142_T	0.563	0.50
245_E	344_V	0.563	0.50
233_H	252_V	0.561	0.50
88_I	110_L	0.560	0.50
269_C	290_Y	0.559	0.50
307_Y	324_G	0.558	0.50
256_C	264_S	0.558	0.50
264_S	269_C	0.557	0.50
26_R	142_T	0.556	0.49
203_L	227_E	0.555	0.49
60_S	66_R	0.555	0.49
149_A	154_S	0.555	0.49
295_G	306_A	0.554	0.49
252_V	289_L	0.554	0.49
33_V	78_D	0.554	0.49
355_R	358_A	0.553	0.49
303_K	328_D	0.553	0.49
41_P	107_Q	0.552	0.49
100_Q	104_F	0.552	0.49
8_A	18_I	0.551	0.49
63_I	114_S	0.550	0.49
25_D	191_K	0.550	0.49
82_T	142_T	0.549	0.49
256_C	295_G	0.549	0.49
12_L	152_C	0.549	0.49
48_A	52_R	0.549	0.49
351_T	357_I	0.549	0.49
79_S	83_A	0.548	0.48
99_A	164_M	0.546	0.48
335_G	338_I	0.545	0.48
45_N	54_L	0.545	0.48
48_A	97_I	0.545	0.48
319_A	323_L	0.544	0.48
334_I	337_Q	0.544	0.48
35_L	152_C	0.544	0.48
133_G	333_G	0.544	0.48
58_P	128_L	0.542	0.48
254_S	356_K	0.542	0.48
268_D	296_R	0.541	0.48
258_T	307_Y	0.540	0.47
92_E	108_A	0.540	0.47
294_E	303_K	0.540	0.47
252_V	365_L	0.539	0.47
258_T	303_K	0.539	0.47
23_D	191_K	0.539	0.47
267_C	307_Y	0.538	0.47
34_A	103_S	0.538	0.47
3_H	187_M	0.536	0.47
64_A	130_A	0.536	0.47
297_G	328_D	0.535	0.47
31_D	56_C	0.535	0.47
17_V	51_G	0.534	0.47
335_G	363_Y	0.533	0.47
258_T	294_E	0.533	0.47
6_E	199_N	0.533	0.47
316_T	320_N	0.533	0.47
54_L	168_G	0.532	0.46
194_I	333_G	0.532	0.46
54_L	164_M	0.532	0.46
31_D	141_H	0.532	0.46
335_G	359_G	0.530	0.46
267_C	295_G	0.529	0.46
62_E	156_G	0.529	0.46
348_K	368_S	0.529	0.46
133_G	362_G	0.527	0.46
247_P	366_S	0.526	0.46
333_G	338_I	0.525	0.46
107_Q	110_L	0.525	0.46
218_T	238_M	0.523	0.45
249_L	280_I	0.522	0.45
274_H	278_N	0.522	0.45
335_G	358_A	0.520	0.45
195_Q	364_G	0.520	0.45
35_L	129_I	0.520	0.45
39_A	159_V	0.520	0.45
77_T	84_F	0.518	0.45
249_L	284_G	0.518	0.45
258_T	356_K	0.517	0.45
272_Q	298_I	0.517	0.45
48_A	126_F	0.516	0.44
19_I	32_F	0.515	0.44
331_N	334_I	0.513	0.44
254_S	258_T	0.513	0.44
35_L	149_A	0.513	0.44
228_V	337_Q	0.512	0.44
316_T	324_G	0.511	0.44
283_E	371_V	0.511	0.44
213_P	307_Y	0.511	0.44
71_P	74_E	0.511	0.44
57_T	157_A	0.511	0.44
210_I	311_E	0.511	0.44
328_D	356_K	0.510	0.44
5_I	8_A	0.509	0.44
43_V	110_L	0.508	0.43
165_N	168_G	0.508	0.43
82_T	170_M	0.508	0.43
258_T	306_A	0.506	0.43
316_T	356_K	0.506	0.43
263_G	274_H	0.506	0.43
291_L	373_L	0.504	0.43
52_R	163_I	0.503	0.43
256_C	360_L	0.503	0.43
298_I	323_L	0.501	0.43
306_A	316_T	0.501	0.43
337_Q	362_G	0.501	0.43
69_L	109_L	0.501	0.43
295_G	299_G	0.500	0.43
295_G	324_G	0.500	0.43

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4i14A	2	0.804	100	0.119	Contact Map
4ffjA	2	0.4874	100	0.531	Contact Map
1k4iA	2	0.5101	100	0.537	Contact Map
4p6dA	2	0.4899	100	0.54	Contact Map
1g57A	2	0.505	100	0.542	Contact Map
3mioA	2	0.4774	100	0.542	Contact Map
1tksA	2	0.4849	100	0.547	Contact Map
1snnA	2	0.4925	100	0.55	Contact Map
2bz1A	2	0.4347	100	0.582	Contact Map
3ur8A	1	0.2085	53.6	0.98	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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