RECA - BACSU - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

RECA - Protein RecA

UniProt:	P16971	Sequences: MSDRQAALDMALKQIEKQFGKGSIMKLGEKTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAEVQQQGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKTKIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGRENAKQFLKENKDIMLMIQEQIREHYGLDNNGVVQQQAEETQEELEFEE	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	348 (327)
Sequences:	2549 (981)
Seq/√Len:	54.3

ECOLI - RECA
BACSU - RECA

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
108_N	111_E	6.444	1.00
54_Y	77_A	5.416	1.00
195_E	211_R	4.434	1.00
221_L	242_I	3.915	1.00
305_Q	309_E	3.858	1.00
264_E	308_K	3.843	1.00
42_S	271_E	3.422	1.00
316_M	320_Q	3.412	1.00
77_A	138_I	3.369	1.00
128_E	179_A	3.264	1.00
51_I	249_V	3.225	1.00
44_A	271_E	3.195	1.00
261_M	304_K	3.163	1.00
49_L	219_V	3.053	1.00
221_L	244_V	3.030	1.00
306_F	313_I	3.026	1.00
40_S	54_Y	2.962	1.00
242_I	258_V	2.924	1.00
54_Y	186_I	2.870	1.00
37_T	51_I	2.870	1.00
39_P	84_Q	2.776	1.00
16_E	21_K	2.744	1.00
158_G	171_Q	2.559	1.00
318_Q	322_R	2.529	1.00
91_I	127_A	2.471	1.00
281_I	317_I	2.457	1.00
276_G	321_I	2.438	1.00
118_D	122_Q	2.409	1.00
38_V	81_V	2.403	1.00
180_I	187_A	2.396	1.00
226_A	241_K	2.367	1.00
306_F	310_N	2.347	1.00
291_Y	316_M	2.305	1.00
60_I	186_I	2.293	1.00
81_V	138_I	2.267	1.00
272_I	314_M	2.264	1.00
269_E	308_K	2.254	1.00
292_E	320_Q	2.164	1.00
40_S	77_A	2.117	1.00
197_V	206_T	2.091	1.00
228_Q	235_V	2.030	1.00
199_V	203_N	2.029	1.00
78_I	140_V	2.019	1.00
104_K	264_E	2.004	1.00
88_A	138_I	1.963	1.00
241_K	255_T	1.955	1.00
47_T	325_Y	1.944	1.00
7_A	11_A	1.916	1.00
161_H	171_Q	1.907	1.00
283_Q	293_E	1.863	0.99
296_L	313_I	1.848	0.99
274_D	300_R	1.787	0.99
150_K	154_E	1.784	0.99
119_T	153_I	1.766	0.99
74_A	190_I	1.749	0.99
78_I	90_F	1.726	0.99
277_T	289_Y	1.722	0.99
78_I	88_A	1.662	0.99
292_E	316_M	1.660	0.99
310_N	313_I	1.658	0.99
193_I	222_E	1.629	0.98
151_A	164_L	1.622	0.98
73_V	223_V	1.616	0.98
199_V	204_P	1.604	0.98
239_K	257_E	1.589	0.98
14_Q	18_Q	1.586	0.98
38_V	186_I	1.574	0.98
315_L	318_Q	1.555	0.98
8_L	12_L	1.554	0.98
279_L	325_Y	1.548	0.98
3_D	6_A	1.531	0.98
77_A	188_I	1.529	0.98
301_E	304_K	1.486	0.97
270_G	274_D	1.481	0.97
315_L	319_E	1.455	0.97
15_I	23_S	1.448	0.97
320_Q	323_E	1.447	0.97
168_L	173_L	1.444	0.97
26_K	111_E	1.412	0.96
270_G	300_R	1.401	0.96
305_Q	308_K	1.382	0.96
227_E	239_K	1.378	0.96
319_E	323_E	1.371	0.95
303_A	306_F	1.348	0.95
311_K	314_M	1.347	0.95
65_P	222_E	1.330	0.95
271_E	275_L	1.316	0.94
279_L	321_I	1.311	0.94
75_L	97_L	1.308	0.94
231_Q	301_E	1.306	0.94
162_V	197_V	1.306	0.94
6_A	9_D	1.302	0.94
59_I	177_S	1.295	0.94
225_R	238_N	1.291	0.94
87_Q	136_V	1.288	0.94
165_Q	208_P	1.284	0.94
89_A	130_L	1.283	0.94
197_V	211_R	1.281	0.93
273_I	282_V	1.277	0.93
225_R	228_Q	1.263	0.93
268_K	318_Q	1.261	0.93
127_A	139_V	1.235	0.92
273_I	300_R	1.226	0.92
229_L	236_M	1.226	0.92
239_K	259_D	1.217	0.92
276_G	314_M	1.193	0.91
226_A	239_K	1.181	0.90
290_S	295_R	1.176	0.90
311_K	315_L	1.174	0.90
222_E	226_A	1.170	0.90
259_D	300_R	1.169	0.90
297_G	303_A	1.156	0.89
300_R	304_K	1.154	0.89
76_H	80_E	1.151	0.89
39_P	46_D	1.149	0.89
27_L	109_I	1.143	0.89
90_F	97_L	1.142	0.89
11_A	14_Q	1.136	0.89
161_H	164_L	1.130	0.88
11_A	129_A	1.128	0.88
45_L	221_L	1.123	0.88
36_S	56_R	1.113	0.88
208_P	211_R	1.112	0.87
241_K	257_E	1.105	0.87
239_K	300_R	1.105	0.87
44_A	275_L	1.103	0.87
43_L	47_T	1.101	0.87
65_P	224_R	1.101	0.87
180_I	186_I	1.096	0.87
15_I	24_I	1.087	0.86
279_L	324_H	1.084	0.86
93_A	147_L	1.078	0.86
41_G	46_D	1.074	0.86
93_A	149_P	1.073	0.86
5_Q	87_Q	1.065	0.85
56_R	81_V	1.064	0.85
131_V	180_I	1.060	0.85
160_S	171_Q	1.060	0.85
6_A	10_M	1.052	0.84
30_K	33_T	1.051	0.84
200_M	206_T	1.046	0.84
26_K	29_E	1.033	0.83
269_E	314_M	1.029	0.83
54_Y	60_I	1.020	0.82
134_G	263_G	1.014	0.82
86_G	137_D	1.012	0.82
280_D	324_H	1.010	0.82
314_M	318_Q	1.009	0.82
288_W	298_Q	1.009	0.82
127_A	187_A	0.999	0.81
323_E	327_L	0.993	0.81
5_Q	9_D	0.993	0.81
181_N	184_K	0.992	0.81
283_Q	292_E	0.991	0.81
295_R	302_N	0.981	0.80
179_A	183_S	0.975	0.80
203_N	222_E	0.974	0.79
80_E	268_K	0.973	0.79
138_I	188_I	0.966	0.79
296_L	306_F	0.964	0.79
10_M	14_Q	0.964	0.79
198_G	204_P	0.961	0.79
44_A	47_T	0.946	0.77
54_Y	138_I	0.937	0.77
312_D	316_M	0.936	0.77
320_Q	324_H	0.929	0.76
127_A	131_V	0.926	0.76
75_L	90_F	0.923	0.76
271_E	276_G	0.919	0.75
90_F	114_L	0.915	0.75
89_A	113_L	0.914	0.75
312_D	315_L	0.913	0.75
148_V	178_G	0.902	0.74
37_T	249_V	0.898	0.74
71_T	90_F	0.880	0.72
319_E	328_D	0.878	0.72
314_M	321_I	0.874	0.72
93_A	208_P	0.865	0.71
160_S	164_L	0.865	0.71
74_A	90_F	0.862	0.71
56_R	86_G	0.857	0.70
319_E	326_G	0.850	0.69
100_V	104_K	0.847	0.69
151_A	161_H	0.842	0.69
90_F	95_H	0.838	0.68
325_Y	328_D	0.838	0.68
273_I	303_A	0.838	0.68
197_V	227_E	0.832	0.68
33_T	99_P	0.830	0.68
302_N	305_Q	0.826	0.67
162_V	200_M	0.825	0.67
193_I	283_Q	0.822	0.67
119_T	154_E	0.817	0.66
308_K	314_M	0.815	0.66
267_S	301_E	0.809	0.66
281_I	321_I	0.805	0.65
47_T	278_E	0.800	0.65
43_L	322_R	0.797	0.64
176_L	180_I	0.794	0.64
273_I	276_G	0.792	0.64
136_V	185_T	0.787	0.63
205_E	224_R	0.787	0.63
129_A	322_R	0.786	0.63
127_A	141_V	0.786	0.63
131_V	168_L	0.782	0.63
124_L	172_A	0.781	0.63
80_E	84_Q	0.781	0.63
287_S	298_Q	0.778	0.63
223_V	242_I	0.778	0.63
152_E	174_R	0.774	0.62
195_E	208_P	0.774	0.62
11_A	134_G	0.773	0.62
44_A	256_A	0.771	0.62
285_S	295_R	0.770	0.62
99_P	211_R	0.769	0.62
9_D	13_K	0.769	0.62
7_A	21_K	0.769	0.62
74_A	78_I	0.768	0.62
10_M	13_K	0.761	0.61
259_D	270_G	0.760	0.61
119_T	150_K	0.759	0.61
238_N	260_I	0.757	0.60
61_E	220_R	0.757	0.60
264_E	267_S	0.749	0.60
11_A	15_I	0.747	0.59
36_S	184_K	0.745	0.59
267_S	304_K	0.744	0.59
136_V	139_V	0.744	0.59
8_L	29_E	0.743	0.59
12_L	24_I	0.743	0.59
303_A	310_N	0.740	0.59
104_K	283_Q	0.739	0.59
36_S	127_A	0.738	0.59
35_I	249_V	0.737	0.58
293_E	296_L	0.736	0.58
131_V	176_L	0.734	0.58
16_E	24_I	0.732	0.58
322_R	325_Y	0.729	0.58
4_R	27_L	0.729	0.58
201_F	204_P	0.729	0.58
299_G	302_N	0.728	0.57
73_V	187_A	0.728	0.57
280_D	283_Q	0.727	0.57
259_D	267_S	0.727	0.57
11_A	18_Q	0.721	0.57
27_L	103_Q	0.721	0.57
197_V	208_P	0.720	0.57
292_E	295_R	0.719	0.57
143_S	209_G	0.717	0.56
101_Y	263_G	0.716	0.56
42_S	266_I	0.713	0.56
18_Q	21_K	0.711	0.56
238_N	262_Y	0.707	0.55
304_K	308_K	0.703	0.55
45_L	49_L	0.702	0.55
261_M	270_G	0.699	0.54
324_H	327_L	0.699	0.54
5_Q	228_Q	0.698	0.54
223_V	240_T	0.696	0.54
324_H	329_N	0.695	0.54
81_V	88_A	0.695	0.54
290_S	303_A	0.694	0.54
148_V	211_R	0.693	0.54
319_E	324_H	0.691	0.54
236_M	261_M	0.688	0.53
4_R	324_H	0.688	0.53
95_H	181_N	0.688	0.53
326_G	329_N	0.687	0.53
4_R	7_A	0.686	0.53
24_I	113_L	0.681	0.53
53_G	70_K	0.680	0.52
157_M	175_K	0.680	0.52
274_D	277_T	0.680	0.52
113_L	130_L	0.677	0.52
33_T	36_S	0.677	0.52
6_A	19_F	0.676	0.52
144_V	169_M	0.676	0.52
173_L	189_F	0.671	0.51
325_Y	329_N	0.671	0.51
15_I	19_F	0.670	0.51
231_Q	234_D	0.669	0.51
5_Q	13_K	0.668	0.51
227_E	233_N	0.667	0.51
235_V	262_Y	0.666	0.51
234_D	254_R	0.665	0.51
34_R	281_I	0.664	0.51
190_I	195_E	0.663	0.51
321_I	325_Y	0.662	0.50
3_D	326_G	0.662	0.50
323_E	326_G	0.662	0.50
13_K	327_L	0.661	0.50
3_D	10_M	0.660	0.50
6_A	14_Q	0.660	0.50
307_L	317_I	0.653	0.50
19_F	193_I	0.653	0.50
127_A	176_L	0.652	0.49
80_E	83_Q	0.651	0.49
323_E	328_D	0.650	0.49
78_I	138_I	0.648	0.49
8_L	135_A	0.646	0.49
29_E	326_G	0.646	0.49
131_V	139_V	0.642	0.48
70_K	142_D	0.640	0.48
95_H	123_A	0.639	0.48
36_S	84_Q	0.638	0.48
15_I	20_G	0.636	0.48
54_Y	188_I	0.636	0.48
53_G	64_G	0.636	0.48
279_L	327_L	0.635	0.48
200_M	203_N	0.633	0.47
324_H	328_D	0.632	0.47
45_L	73_V	0.628	0.47
40_S	46_D	0.628	0.47
12_L	129_A	0.627	0.47
60_I	219_V	0.627	0.47
11_A	132_R	0.626	0.47
291_Y	317_I	0.622	0.46
319_E	329_N	0.622	0.46
228_Q	255_T	0.622	0.46
113_L	136_V	0.620	0.46
135_A	323_E	0.619	0.46
13_K	18_Q	0.618	0.46
39_P	54_Y	0.615	0.45
157_M	168_L	0.615	0.45
258_V	266_I	0.614	0.45
10_M	328_D	0.614	0.45
309_E	329_N	0.614	0.45
196_K	204_P	0.611	0.45
275_L	279_L	0.611	0.45
159_D	164_L	0.611	0.45
189_F	213_L	0.610	0.45
193_I	227_E	0.608	0.45
185_T	269_E	0.603	0.44
313_I	316_M	0.603	0.44
230_K	233_N	0.601	0.44
122_Q	284_K	0.601	0.44
49_L	244_V	0.598	0.44
7_A	14_Q	0.596	0.43
9_D	43_L	0.596	0.43
5_Q	10_M	0.596	0.43
315_L	323_E	0.596	0.43
200_M	204_P	0.596	0.43
51_I	129_A	0.594	0.43
319_E	327_L	0.592	0.43
104_K	308_K	0.589	0.43
189_F	247_N	0.587	0.43
303_A	307_L	0.586	0.42
63_Y	222_E	0.586	0.42
179_A	232_G	0.585	0.42
305_Q	316_M	0.584	0.42
282_V	303_A	0.582	0.42
42_S	227_E	0.580	0.42
53_G	142_D	0.579	0.42
13_K	193_I	0.579	0.42
97_L	161_H	0.579	0.42
162_V	201_F	0.576	0.41
33_T	37_T	0.575	0.41
44_A	54_Y	0.575	0.41
13_K	283_Q	0.575	0.41
138_I	186_I	0.575	0.41
204_P	224_R	0.574	0.41
9_D	31_T	0.574	0.41
275_L	320_Q	0.573	0.41
94_E	143_S	0.572	0.41
283_Q	295_R	0.571	0.41
303_A	325_Y	0.570	0.41
12_L	113_L	0.570	0.41
321_I	328_D	0.569	0.41
88_A	180_I	0.567	0.40
315_L	326_G	0.566	0.40
124_L	175_K	0.566	0.40
128_E	132_R	0.565	0.40
101_Y	262_Y	0.563	0.40
231_Q	280_D	0.562	0.40
293_E	323_E	0.562	0.40
16_E	22_G	0.561	0.40
240_T	258_V	0.561	0.40
101_Y	260_I	0.561	0.40
281_I	291_Y	0.560	0.40
313_I	317_I	0.560	0.40
47_T	279_L	0.559	0.40
280_D	285_S	0.558	0.40
320_Q	326_G	0.557	0.39
6_A	13_K	0.556	0.39
76_H	81_V	0.555	0.39
76_H	86_G	0.555	0.39
20_G	25_M	0.554	0.39
318_Q	321_I	0.553	0.39
195_E	278_E	0.553	0.39
247_N	250_A	0.552	0.39
156_D	161_H	0.552	0.39
67_S	211_R	0.551	0.39
181_N	240_T	0.551	0.39
4_R	9_D	0.550	0.39
64_G	70_K	0.549	0.39
316_M	319_E	0.548	0.39
67_S	195_E	0.548	0.39
94_E	209_G	0.547	0.38
140_V	316_M	0.547	0.38
315_L	324_H	0.545	0.38
62_V	188_I	0.545	0.38
279_L	326_G	0.544	0.38
190_I	211_R	0.542	0.38
8_L	99_P	0.541	0.38
99_P	129_A	0.541	0.38
4_R	129_A	0.540	0.38
228_Q	240_T	0.539	0.38
13_K	280_D	0.539	0.38
56_R	137_D	0.538	0.38
148_V	179_A	0.537	0.37
95_H	132_R	0.537	0.37
219_V	249_V	0.536	0.37
56_R	184_K	0.535	0.37
77_A	88_A	0.534	0.37
79_A	116_Q	0.534	0.37
81_V	186_I	0.533	0.37
7_A	16_E	0.533	0.37
6_A	328_D	0.533	0.37
239_K	274_D	0.532	0.37
240_T	262_Y	0.532	0.37
7_A	10_M	0.532	0.37
4_R	104_K	0.531	0.37
90_F	157_M	0.531	0.37
76_H	266_I	0.529	0.37
268_K	272_I	0.529	0.37
11_A	23_S	0.528	0.37
290_S	293_E	0.528	0.37
210_G	237_G	0.527	0.36
26_K	249_V	0.526	0.36
264_E	269_E	0.526	0.36
272_I	318_Q	0.526	0.36
21_K	125_E	0.525	0.36
105_L	288_W	0.524	0.36
18_Q	227_E	0.524	0.36
222_E	241_K	0.524	0.36
313_I	328_D	0.524	0.36
47_T	321_I	0.523	0.36
131_V	290_S	0.523	0.36
137_D	152_E	0.523	0.36
43_L	46_D	0.522	0.36
291_Y	321_I	0.521	0.36
55_P	219_V	0.521	0.36
118_D	157_M	0.520	0.36
294_E	315_L	0.519	0.36
70_K	94_E	0.518	0.36
203_N	224_R	0.518	0.36
122_Q	125_E	0.517	0.35
59_I	184_K	0.517	0.35
233_N	255_T	0.517	0.35
134_G	183_S	0.516	0.35
3_D	60_I	0.514	0.35
79_A	207_T	0.514	0.35
129_A	227_E	0.514	0.35
312_D	319_E	0.513	0.35
277_T	284_K	0.513	0.35
61_E	192_Q	0.513	0.35
236_M	306_F	0.512	0.35
307_L	313_I	0.512	0.35
44_A	258_V	0.512	0.35
5_Q	14_Q	0.511	0.35
186_I	322_R	0.511	0.35
233_N	239_K	0.511	0.35
61_E	194_R	0.511	0.35
79_A	107_V	0.510	0.35
273_I	294_E	0.510	0.35
305_Q	323_E	0.509	0.35
40_S	219_V	0.509	0.35
9_D	111_E	0.509	0.35
35_I	218_S	0.509	0.35
286_G	299_G	0.508	0.35
5_Q	129_A	0.508	0.35
30_K	271_E	0.508	0.35
314_M	319_E	0.508	0.35
125_E	153_I	0.508	0.35
5_Q	179_A	0.507	0.34
75_L	105_L	0.506	0.34
77_A	186_I	0.506	0.34
256_A	272_I	0.505	0.34
5_Q	324_H	0.505	0.34
317_I	321_I	0.505	0.34
30_K	129_A	0.504	0.34
29_E	32_D	0.504	0.34
248_K	252_P	0.504	0.34
226_A	255_T	0.503	0.34
17_K	233_N	0.502	0.34
281_I	320_Q	0.502	0.34
187_A	195_E	0.502	0.34
201_F	327_L	0.502	0.34
270_G	304_K	0.502	0.34
228_Q	262_Y	0.500	0.34

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3hr8A	1	0.9655	100	0.376	Contact Map
4ppfA	1	0.8908	100	0.383	Contact Map
3cmwA	1	0.8994	100	0.394	Contact Map
3cmuA	1	0.8937	100	0.395	Contact Map
1u94A	3	0.8793	100	0.411	Contact Map
1xp8A	3	0.8534	100	0.441	Contact Map
3io5A	2	0.7184	100	0.446	Contact Map
2z43A	1	0.658	100	0.635	Contact Map
3ldaA	1	0.6552	100	0.64	Contact Map
1pznA	5	0.6753	100	0.645	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0104 seconds.