DIVIB - BACSU - GREMLIN Contacts

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DIVIB - Cell division protein DivIB

UniProt:	P16655	Sequences: MNPGQDREKIVNIEERIPKIKEQRKQKANRRLISFIMLFFIMVLIIVYLQTPISKVSTISVTGNENVSKKEIIDLSDINSGDTEFWSLDKQKTEKKIQQNKLVKKAEISKSLPNKINIAIEEYKAIAYLEKDDVYYEVLENGSVLPNEVTPDDAGPILVNWTNAKKRSQMAKQLDALSNSLKQSISEIYYTPVKMDENRIKLYMNDGYVVTASIKTFADRMKTYPSIISQLSSNKKGIIHLEVATYFEEFGKNDKAAKKEDEN	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	263 (219)
Sequences:	3427 (2836)
Seq/√Len:	191.7

ECOLI - FTSQ
BACSU - DIVIB

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
123_Y	139_L	4.415	1.00
111_S	117_N	3.424	1.00
68_S	71_E	3.049	1.00
216_T	219_D	2.972	1.00
62_T	119_A	2.880	1.00
76_S	118_I	2.678	1.00
98_Q	106_A	2.669	1.00
90_K	110_K	2.585	1.00
60_S	117_N	2.557	1.00
61_V	72_I	2.548	1.00
58_T	115_K	2.526	1.00
62_T	117_N	2.447	1.00
75_L	100_N	2.399	1.00
104_K	121_E	2.375	1.00
60_S	115_K	2.371	1.00
90_K	108_I	2.348	1.00
123_Y	143_S	2.241	1.00
104_K	141_N	2.228	1.00
210_V	224_Y	2.180	1.00
67_V	100_N	2.160	1.00
69_K	73_I	2.105	1.00
98_Q	105_K	2.034	1.00
89_D	92_K	1.948	1.00
203_Y	209_V	1.946	1.00
105_K	121_E	1.870	1.00
97_I	120_I	1.823	1.00
104_K	123_Y	1.810	1.00
139_L	143_S	1.796	1.00
104_K	140_E	1.794	1.00
204_M	207_G	1.781	1.00
224_Y	241_L	1.746	1.00
70_K	74_D	1.740	1.00
57_S	114_N	1.738	1.00
43_V	47_V	1.737	1.00
97_I	103_V	1.731	1.00
109_S	119_A	1.713	1.00
44_L	47_V	1.705	1.00
93_T	108_I	1.696	1.00
204_M	210_V	1.695	1.00
227_I	247_F	1.682	1.00
201_K	209_V	1.668	1.00
78_I	96_K	1.662	1.00
85_F	112_L	1.647	1.00
76_S	97_I	1.632	1.00
92_K	96_K	1.628	1.00
107_E	119_A	1.628	1.00
109_S	117_N	1.599	1.00
184_S	205_N	1.595	1.00
94_E	98_Q	1.564	1.00
238_I	250_F	1.545	1.00
224_Y	239_I	1.544	1.00
61_V	73_I	1.494	1.00
33_I	37_M	1.480	1.00
66_N	102_L	1.456	1.00
126_I	140_E	1.455	1.00
237_G	250_F	1.424	1.00
127_A	158_L	1.374	1.00
54_S	86_W	1.373	1.00
159_V	187_E	1.351	1.00
131_K	134_V	1.344	1.00
85_F	110_K	1.344	1.00
209_V	238_I	1.318	1.00
42_M	46_I	1.310	1.00
159_V	189_Y	1.307	1.00
90_K	94_E	1.307	1.00
94_E	108_I	1.305	1.00
186_S	203_Y	1.294	1.00
91_Q	94_E	1.284	1.00
73_I	76_S	1.282	1.00
213_S	220_R	1.281	1.00
127_A	138_V	1.272	1.00
187_E	203_Y	1.265	1.00
186_S	205_N	1.261	1.00
54_S	84_E	1.249	1.00
100_N	103_V	1.243	1.00
64_N	69_K	1.233	1.00
70_K	73_I	1.231	1.00
157_I	187_E	1.224	1.00
212_A	220_R	1.223	1.00
136_Y	144_V	1.221	1.00
102_L	145_L	1.216	1.00
76_S	116_I	1.212	1.00
64_N	122_E	1.210	1.00
103_V	106_A	1.190	1.00
135_Y	157_I	1.160	1.00
170_M	190_Y	1.158	1.00
130_E	157_I	1.144	1.00
40_F	44_L	1.136	1.00
191_T	199_R	1.135	1.00
49_L	52_P	1.133	1.00
124_K	140_E	1.119	1.00
64_N	72_I	1.113	1.00
72_I	120_I	1.104	1.00
103_V	120_I	1.099	1.00
196_D	199_R	1.091	1.00
111_S	115_K	1.076	1.00
78_I	116_I	1.074	1.00
128_Y	157_I	1.067	1.00
48_Y	51_T	1.067	1.00
173_Q	218_A	1.063	1.00
66_N	122_E	1.054	1.00
71_E	75_L	1.049	1.00
125_A	155_G	1.044	1.00
58_T	114_N	1.039	1.00
34_S	37_M	1.038	1.00
168_S	172_K	1.036	1.00
223_T	227_I	1.010	1.00
158_L	167_R	1.008	1.00
170_M	188_I	0.997	1.00
188_I	202_L	0.992	0.99
185_I	202_L	0.985	0.99
106_A	118_I	0.971	0.99
46_I	50_Q	0.969	0.99
170_M	173_Q	0.965	0.99
64_N	120_I	0.959	0.99
56_V	88_L	0.957	0.99
67_V	102_L	0.955	0.99
208_Y	211_T	0.954	0.99
94_E	105_K	0.948	0.99
38_L	42_M	0.944	0.99
176_A	218_A	0.944	0.99
48_Y	53_I	0.939	0.99
67_V	72_I	0.938	0.99
173_Q	221_M	0.937	0.99
73_I	77_D	0.928	0.99
41_I	45_I	0.926	0.99
75_L	97_I	0.923	0.99
88_L	93_T	0.919	0.99
211_T	240_H	0.917	0.99
67_V	97_I	0.913	0.99
35_F	39_F	0.908	0.99
130_E	135_Y	0.904	0.99
97_I	106_A	0.902	0.99
76_S	93_T	0.887	0.99
125_A	145_L	0.884	0.99
190_Y	197_E	0.863	0.99
95_K	98_Q	0.858	0.98
211_T	238_I	0.856	0.98
79_N	96_K	0.856	0.98
136_Y	147_N	0.855	0.98
170_M	178_S	0.848	0.98
93_T	96_K	0.839	0.98
91_Q	95_K	0.834	0.98
212_A	242_E	0.834	0.98
208_Y	239_I	0.833	0.98
130_E	133_D	0.830	0.98
243_V	246_Y	0.830	0.98
191_T	201_K	0.824	0.98
171_A	175_D	0.821	0.98
224_Y	228_I	0.820	0.98
108_I	118_I	0.818	0.98
137_E	145_L	0.810	0.98
212_A	216_T	0.806	0.98
134_V	147_N	0.805	0.98
27_K	30_R	0.800	0.98
79_N	82_D	0.799	0.98
208_Y	236_K	0.798	0.98
34_S	38_L	0.792	0.97
29_N	33_I	0.791	0.97
198_N	213_S	0.791	0.97
226_S	229_S	0.788	0.97
102_L	146_P	0.788	0.97
200_I	214_I	0.783	0.97
166_K	190_Y	0.782	0.97
102_L	221_M	0.778	0.97
106_A	110_K	0.771	0.97
189_Y	203_Y	0.770	0.97
189_Y	201_K	0.769	0.97
60_S	111_S	0.767	0.97
37_M	49_L	0.764	0.97
96_K	99_Q	0.760	0.97
223_T	244_A	0.758	0.97
30_R	37_M	0.758	0.97
36_I	39_F	0.756	0.97
72_I	97_I	0.752	0.97
199_R	213_S	0.750	0.97
93_T	97_I	0.749	0.96
231_L	239_I	0.745	0.96
222_K	226_S	0.743	0.96
178_S	181_L	0.743	0.96
99_Q	149_V	0.741	0.96
39_F	46_I	0.739	0.96
65_E	122_E	0.737	0.96
200_I	212_A	0.737	0.96
51_T	54_S	0.736	0.96
33_I	36_I	0.727	0.96
88_L	116_I	0.725	0.96
67_V	120_I	0.725	0.96
33_I	38_L	0.724	0.96
122_E	224_Y	0.721	0.96
75_L	99_Q	0.720	0.96
128_Y	135_Y	0.720	0.96
93_T	116_I	0.718	0.96
72_I	103_V	0.715	0.95
41_I	44_L	0.714	0.95
102_L	110_K	0.712	0.95
190_Y	199_R	0.709	0.95
172_K	176_A	0.708	0.95
42_M	174_L	0.707	0.95
222_K	225_P	0.706	0.95
176_A	217_F	0.705	0.95
37_M	40_F	0.701	0.95
50_Q	84_E	0.700	0.95
163_N	166_K	0.695	0.95
35_F	42_M	0.692	0.95
204_M	208_Y	0.690	0.94
58_T	118_I	0.688	0.94
28_A	32_L	0.687	0.94
84_E	87_S	0.686	0.94
71_E	74_D	0.682	0.94
230_Q	233_S	0.681	0.94
85_F	114_N	0.676	0.94
27_K	31_R	0.676	0.94
240_H	243_V	0.675	0.94
236_K	239_I	0.674	0.94
76_S	96_K	0.672	0.94
52_P	57_S	0.670	0.94
201_K	211_T	0.670	0.94
72_I	75_L	0.668	0.93
49_L	53_I	0.666	0.93
56_V	78_I	0.661	0.93
173_Q	177_L	0.659	0.93
169_Q	173_Q	0.659	0.93
186_S	207_G	0.659	0.93
176_A	179_N	0.656	0.93
54_S	139_L	0.654	0.93
74_D	77_D	0.652	0.93
202_L	212_A	0.652	0.93
232_S	235_K	0.651	0.93
180_S	225_P	0.649	0.92
137_E	224_Y	0.649	0.92
227_I	239_I	0.646	0.92
221_M	244_A	0.641	0.92
61_V	64_N	0.640	0.92
37_M	41_I	0.639	0.92
73_I	78_I	0.638	0.92
56_V	145_L	0.638	0.92
172_K	175_D	0.638	0.92
82_D	86_W	0.638	0.92
150_T	154_A	0.637	0.92
67_V	146_P	0.637	0.92
131_K	136_Y	0.636	0.92
65_E	124_K	0.636	0.92
129_L	200_I	0.636	0.92
173_Q	176_A	0.634	0.92
110_K	116_I	0.633	0.92
95_K	176_A	0.631	0.91
181_L	204_M	0.630	0.91
57_S	60_S	0.629	0.91
128_Y	155_G	0.626	0.91
66_N	125_A	0.625	0.91
86_W	244_A	0.623	0.91
169_Q	172_K	0.621	0.91
80_S	88_L	0.617	0.90
64_N	67_V	0.614	0.90
55_K	87_S	0.613	0.90
97_I	100_N	0.612	0.90
112_L	127_A	0.612	0.90
207_G	211_T	0.606	0.90
144_V	164_A	0.605	0.90
183_Q	206_D	0.603	0.89
202_L	210_V	0.601	0.89
37_M	44_L	0.597	0.89
242_E	248_E	0.597	0.89
85_F	116_I	0.596	0.89
199_R	212_A	0.595	0.89
219_D	223_T	0.595	0.89
164_A	170_M	0.592	0.89
78_I	93_T	0.590	0.88
35_F	38_L	0.590	0.88
161_W	190_Y	0.589	0.88
200_I	213_S	0.589	0.88
190_Y	241_L	0.589	0.88
230_Q	234_N	0.585	0.88
77_D	96_K	0.584	0.88
55_K	82_D	0.583	0.88
81_G	93_T	0.581	0.88
185_I	204_M	0.579	0.87
28_A	31_R	0.575	0.87
125_A	137_E	0.571	0.87
173_Q	178_S	0.569	0.87
29_N	32_L	0.567	0.86
45_I	48_Y	0.564	0.86
107_E	121_E	0.562	0.86
163_N	167_R	0.562	0.86
227_I	233_S	0.560	0.86
165_K	169_Q	0.559	0.86
44_L	48_Y	0.559	0.86
50_Q	53_I	0.557	0.85
67_V	135_Y	0.551	0.85
29_N	34_S	0.550	0.85
78_I	88_L	0.550	0.85
243_V	248_E	0.548	0.84
90_K	112_L	0.546	0.84
164_A	167_R	0.545	0.84
84_E	112_L	0.544	0.84
175_D	183_Q	0.540	0.84
220_R	241_L	0.540	0.84
244_A	247_F	0.535	0.83
247_F	250_F	0.534	0.83
138_V	230_Q	0.533	0.83
60_S	119_A	0.533	0.83
228_I	232_S	0.533	0.83
191_T	220_R	0.532	0.83
110_K	145_L	0.527	0.82
133_D	146_P	0.527	0.82
38_L	41_I	0.527	0.82
36_I	43_V	0.526	0.82
157_I	186_S	0.526	0.82
236_K	242_E	0.524	0.82
41_I	149_V	0.522	0.82
197_E	225_P	0.521	0.81
32_L	40_F	0.521	0.81
175_D	182_K	0.518	0.81
86_W	110_K	0.518	0.81
198_N	201_K	0.515	0.81
32_L	36_I	0.515	0.81
217_F	221_M	0.515	0.81
220_R	242_E	0.514	0.81
103_V	202_L	0.512	0.80
123_Y	141_N	0.510	0.80
239_I	243_V	0.509	0.80
92_K	95_K	0.506	0.80
212_A	241_L	0.504	0.79
125_A	149_V	0.503	0.79
131_K	172_K	0.503	0.79
177_L	206_D	0.502	0.79
127_A	206_D	0.500	0.79

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2vh2A	1	0.7376	100	0.358	Contact Map
2vh1A	1	0.7262	100	0.372	Contact Map
1yr1A	1	0.4449	99.7	0.663	Contact Map
3j00Z	1	0.346	98.9	0.779	Contact Map
4k3bA	1	0.7681	96.8	0.864	Contact Map
3efcA	1	0.7338	93.3	0.893	Contact Map
2qdfA	1	0.7452	91.5	0.898	Contact Map
2x8xX	1	0.7338	78.7	0.915	Contact Map
3q6bA	1	0.4601	75.3	0.918	Contact Map
4bzaA	1	0.5095	69.1	0.921	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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