SECY - BACSU - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

SECY - Protein translocase subunit SecY

UniProt:	P16336	Sequences: MFKTISNFMRVSDIRNKIIFTLLMLIVFRIGAFIPVPYVNAEALQAQSQMGVFDLLNTFGGGALYQFSIFAMGITPYITASIIIQLLQMDVVPKFTEWSKQGEVGRRKLAQFTRYFTIVLGFIQALGMSYGFNNLANGMLIEKSGVSTYLIIALVLTGGTAFLMWLGEQITSHGVGNGISIIIFAGIVSSIPKTIGQIYETQFVGSNDQLFIHIVKVALLVIAILAVIVGVIFIQQAVRKIAIQYAKGTGRSPAGGGQSTHLPLKVNPAGVIPVIFAVAFLITPRTIASFFGTNDVTKWIQNNFDNTHPVGMAIYVALIIAFTYFYAFVQVNPEQMADNLKKQGGYIPGVRPGKMTQDRITSILYRLTFVGSIFLAVISILPIFFIQFAGLPQSAQIGGTSLLIVVGVALETMKQLESQLVKRNYRGFMKN	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	431 (412)
Sequences:	3187 (1692)
Seq/√Len:	83.3

ECOLI - SECY
BACSU - SECY
HALSA - SECY
SULSO - SECY

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
316_V	376_A	5.570	1.00
31_G	70_F	5.550	1.00
354_K	358_D	5.259	1.00
24_M	166_L	5.148	1.00
84_I	109_L	4.424	1.00
324_Y	369_F	4.134	1.00
19_I	23_L	4.077	1.00
337_A	357_Q	3.942	1.00
299_W	303_N	3.808	1.00
20_F	24_M	3.406	1.00
133_N	149_Y	3.323	1.00
95_F	109_L	3.306	1.00
146_V	150_L	3.259	1.00
361_T	365_Y	3.239	1.00
103_E	106_R	3.125	1.00
98_W	112_F	3.041	1.00
320_I	376_A	2.997	1.00
57_N	65_Y	2.969	1.00
162_F	166_L	2.966	1.00
118_I	161_A	2.876	1.00
27_V	162_F	2.814	1.00
84_I	116_F	2.619	1.00
94_K	97_E	2.587	1.00
125_A	157_T	2.578	1.00
243_I	262_L	2.549	1.00
338_D	342_K	2.541	1.00
122_F	157_T	2.495	1.00
245_Y	345_G	2.488	1.00
316_V	320_I	2.456	1.00
84_I	95_F	2.412	1.00
264_L	364_L	2.409	1.00
96_T	100_K	2.383	1.00
12_S	16_N	2.293	1.00
34_I	69_I	2.277	1.00
274_V	379_S	2.274	1.00
335_Q	339_N	2.260	1.00
296_V	300_I	2.234	1.00
18_I	22_L	2.227	1.00
25_L	181_I	2.200	1.00
161_A	164_M	2.150	1.00
237_A	266_V	2.129	1.00
309_P	313_A	2.095	1.00
36_V	152_I	2.061	1.00
25_L	185_A	2.057	1.00
108_K	111_Q	2.046	1.00
323_T	375_L	2.044	1.00
147_S	151_I	1.998	1.00
28_F	186_G	1.986	1.00
21_T	181_I	1.975	1.00
362_S	366_R	1.906	1.00
241_I	347_I	1.901	1.00
317_A	321_A	1.884	1.00
27_V	166_L	1.869	1.00
122_F	153_A	1.849	1.00
323_T	372_S	1.831	1.00
141_I	144_S	1.827	1.00
230_G	377_V	1.820	1.00
338_D	341_K	1.778	1.00
200_E	203_F	1.759	1.00
310_V	313_A	1.732	1.00
235_Q	265_K	1.727	1.00
17_K	419_Q	1.711	1.00
373_I	377_V	1.685	1.00
334_E	357_Q	1.678	1.00
280_F	318_L	1.655	1.00
97_E	101_Q	1.640	1.00
247_K	256_G	1.638	1.00
241_I	363_I	1.618	1.00
218_A	222_I	1.611	1.00
122_F	125_A	1.588	1.00
114_R	168_E	1.570	1.00
324_Y	365_Y	1.568	1.00
94_K	98_W	1.563	1.00
121_G	157_T	1.561	1.00
223_A	227_V	1.552	1.00
303_N	310_V	1.548	1.00
202_Q	217_V	1.536	1.00
50_M	54_D	1.531	1.00
333_P	361_T	1.527	1.00
235_Q	374_F	1.525	1.00
353_G	356_T	1.523	0.99
268_P	364_L	1.519	0.99
40_N	43_A	1.500	0.99
387_Q	390_G	1.493	0.99
300_I	304_F	1.487	0.99
288_A	300_I	1.483	0.99
197_Q	200_E	1.480	0.99
164_M	179_I	1.480	0.99
291_F	294_N	1.459	0.99
355_M	358_D	1.458	0.99
121_G	160_T	1.457	0.99
175_V	416_L	1.454	0.99
117_T	164_M	1.453	0.99
331_V	336_M	1.444	0.99
336_M	360_I	1.437	0.99
285_R	288_A	1.435	0.99
298_K	302_N	1.432	0.99
119_V	123_I	1.425	0.99
146_V	149_Y	1.420	0.99
84_I	112_F	1.404	0.99
24_M	162_F	1.404	0.99
195_I	199_Y	1.403	0.99
320_I	372_S	1.395	0.99
236_Q	410_L	1.392	0.99
283_T	287_I	1.355	0.99
312_M	380_I	1.354	0.99
26_I	30_I	1.348	0.99
88_Q	99_S	1.339	0.99
360_I	364_L	1.333	0.99
297_T	300_I	1.333	0.99
148_T	152_I	1.332	0.99
32_A	63_A	1.321	0.99
23_L	26_I	1.315	0.99
328_F	361_T	1.300	0.98
13_D	16_N	1.299	0.98
43_A	140_L	1.285	0.98
88_Q	109_L	1.281	0.98
21_T	174_G	1.279	0.98
295_D	298_K	1.276	0.98
125_A	153_A	1.274	0.98
120_L	428_F	1.264	0.98
117_T	160_T	1.263	0.98
241_I	360_I	1.263	0.98
234_I	237_A	1.260	0.98
401_S	405_V	1.256	0.98
126_L	153_A	1.251	0.98
57_N	190_S	1.250	0.98
374_F	403_L	1.248	0.98
233_F	237_A	1.231	0.98
160_T	163_L	1.227	0.98
75_T	79_T	1.226	0.98
285_R	289_S	1.221	0.98
309_P	312_M	1.214	0.97
114_R	164_M	1.202	0.97
43_A	46_A	1.199	0.97
296_V	299_W	1.189	0.97
352_P	356_T	1.184	0.97
227_V	231_V	1.181	0.97
20_F	173_H	1.167	0.97
271_V	398_G	1.166	0.97
331_V	360_I	1.162	0.97
74_I	179_I	1.162	0.97
80_A	116_F	1.161	0.97
184_F	409_A	1.155	0.97
310_V	314_I	1.151	0.97
149_Y	153_A	1.141	0.96
129_S	152_I	1.139	0.96
28_F	32_A	1.133	0.96
253_P	257_G	1.133	0.96
252_S	257_G	1.132	0.96
102_G	105_G	1.124	0.96
262_L	424_N	1.123	0.96
298_K	301_Q	1.119	0.96
250_G	255_G	1.111	0.96
6_S	10_R	1.103	0.96
46_A	287_I	1.103	0.96
70_F	163_L	1.103	0.96
384_F	388_F	1.101	0.96
16_N	19_I	1.099	0.95
320_I	373_I	1.081	0.95
411_E	415_Q	1.077	0.95
249_T	424_N	1.075	0.95
288_A	291_F	1.073	0.95
42_E	45_Q	1.070	0.95
17_K	266_V	1.064	0.95
8_F	18_I	1.063	0.95
251_R	255_G	1.062	0.95
190_S	193_K	1.061	0.95
41_A	45_Q	1.061	0.95
15_R	19_I	1.057	0.94
240_K	261_H	1.057	0.94
148_T	151_I	1.056	0.94
140_L	143_K	1.053	0.94
7_N	11_V	1.044	0.94
215_V	219_L	1.032	0.94
236_Q	414_K	1.031	0.94
417_E	423_R	1.026	0.93
221_V	225_L	1.021	0.93
297_T	301_Q	1.021	0.93
332_N	335_Q	1.019	0.93
141_I	145_G	1.015	0.93
271_V	400_T	1.013	0.93
57_N	60_G	1.010	0.93
87_L	91_V	1.007	0.93
253_P	256_G	1.004	0.93
372_S	376_A	0.998	0.92
180_S	408_V	0.995	0.92
182_I	286_T	0.991	0.92
250_G	253_P	0.980	0.92
191_I	195_I	0.980	0.92
262_L	360_I	0.977	0.92
39_V	43_A	0.974	0.92
7_N	424_N	0.973	0.92
417_E	428_F	0.971	0.91
122_F	150_L	0.971	0.91
412_T	416_L	0.967	0.91
144_S	148_T	0.961	0.91
264_L	367_L	0.961	0.91
185_A	188_V	0.957	0.91
163_L	182_I	0.954	0.91
175_V	412_T	0.950	0.91
103_E	107_R	0.949	0.90
167_G	179_I	0.948	0.90
168_E	247_K	0.941	0.90
8_F	416_L	0.936	0.90
316_V	380_I	0.934	0.90
203_F	206_S	0.930	0.90
274_V	399_G	0.929	0.90
92_V	96_T	0.926	0.89
230_G	234_I	0.925	0.89
194_T	198_I	0.924	0.89
286_T	290_F	0.924	0.89
145_G	225_L	0.924	0.89
220_L	389_A	0.921	0.89
183_I	275_I	0.916	0.89
303_N	314_I	0.914	0.89
133_N	146_V	0.912	0.89
232_I	374_F	0.909	0.88
42_E	46_A	0.907	0.88
109_L	280_F	0.905	0.88
44_L	125_A	0.903	0.88
111_Q	115_Y	0.902	0.88
65_Y	68_S	0.901	0.88
234_I	262_L	0.901	0.88
249_T	254_A	0.896	0.88
72_M	79_T	0.895	0.88
11_V	420_L	0.893	0.88
51_G	57_N	0.889	0.87
254_A	258_Q	0.887	0.87
28_F	166_L	0.885	0.87
234_I	378_I	0.885	0.87
17_K	289_S	0.884	0.87
341_K	344_G	0.882	0.87
272_I	329_V	0.882	0.87
411_E	414_K	0.880	0.87
36_V	129_S	0.878	0.87
376_A	380_I	0.876	0.87
75_T	327_A	0.874	0.86
157_T	364_L	0.870	0.86
95_F	112_F	0.870	0.86
112_F	116_F	0.867	0.86
12_S	423_R	0.866	0.86
293_T	298_K	0.866	0.86
251_R	257_G	0.864	0.86
234_I	374_F	0.863	0.86
32_A	68_S	0.861	0.86
306_N	383_I	0.860	0.86
203_F	213_H	0.853	0.85
139_M	143_K	0.852	0.85
412_T	415_Q	0.850	0.85
316_V	373_I	0.848	0.85
130_Y	133_N	0.848	0.85
313_A	317_A	0.847	0.85
222_I	226_A	0.846	0.85
187_I	271_V	0.842	0.84
130_Y	149_Y	0.839	0.84
81_S	400_T	0.836	0.84
234_I	370_V	0.836	0.84
73_G	116_F	0.836	0.84
299_W	302_N	0.835	0.84
194_T	396_Q	0.833	0.84
36_V	67_F	0.833	0.84
116_F	179_I	0.827	0.83
195_I	198_I	0.827	0.83
244_Q	418_S	0.826	0.83
274_V	375_L	0.825	0.83
17_K	28_F	0.824	0.83
280_F	321_A	0.823	0.83
143_K	146_V	0.821	0.83
293_T	296_V	0.817	0.83
417_E	427_G	0.816	0.82
250_G	257_G	0.813	0.82
166_L	308_H	0.813	0.82
126_L	156_L	0.810	0.82
153_A	157_T	0.806	0.82
95_F	98_W	0.806	0.82
150_L	154_L	0.804	0.82
27_V	299_W	0.799	0.81
346_Y	352_P	0.799	0.81
54_D	57_N	0.798	0.81
339_N	343_Q	0.796	0.81
350_V	359_R	0.793	0.81
201_T	206_S	0.792	0.81
214_I	218_A	0.787	0.80
271_V	399_G	0.785	0.80
290_F	340_L	0.781	0.80
110_A	168_E	0.779	0.79
79_T	83_I	0.778	0.79
385_F	389_A	0.777	0.79
72_M	336_M	0.777	0.79
281_L	380_I	0.774	0.79
33_F	57_N	0.769	0.79
6_S	385_F	0.768	0.78
8_F	11_V	0.768	0.78
250_G	256_G	0.766	0.78
278_V	315_Y	0.765	0.78
270_G	403_L	0.764	0.78
227_V	381_L	0.764	0.78
243_I	429_M	0.763	0.78
301_Q	305_D	0.762	0.78
78_I	404_I	0.762	0.78
193_K	197_Q	0.760	0.78
190_S	283_T	0.759	0.78
5_I	9_M	0.758	0.78
239_R	284_P	0.755	0.77
306_N	311_G	0.753	0.77
225_L	229_V	0.751	0.77
336_M	374_F	0.748	0.77
220_L	224_I	0.748	0.77
291_F	297_T	0.748	0.77
120_L	279_A	0.747	0.77
17_K	142_E	0.746	0.76
94_K	163_L	0.745	0.76
404_I	408_V	0.742	0.76
217_V	221_V	0.742	0.76
271_V	275_I	0.741	0.76
333_P	337_A	0.740	0.76
226_A	229_V	0.739	0.76
157_T	161_A	0.737	0.76
20_F	169_Q	0.736	0.75
67_F	156_L	0.734	0.75
292_G	297_T	0.732	0.75
145_G	148_T	0.731	0.75
28_F	185_A	0.731	0.75
129_S	153_A	0.730	0.75
83_I	120_L	0.730	0.75
367_L	372_S	0.729	0.75
305_D	314_I	0.725	0.74
99_S	235_Q	0.723	0.74
196_G	199_Y	0.722	0.74
250_G	254_A	0.721	0.74
96_T	99_S	0.720	0.74
282_I	286_T	0.718	0.74
21_T	24_M	0.717	0.74
74_I	163_L	0.717	0.74
328_F	372_S	0.716	0.73
74_I	238_V	0.712	0.73
72_M	160_T	0.712	0.73
295_D	373_I	0.711	0.73
198_I	201_T	0.710	0.73
294_N	299_W	0.710	0.73
123_I	162_F	0.710	0.73
340_L	345_G	0.709	0.73
249_T	422_K	0.706	0.72
38_Y	148_T	0.706	0.72
74_I	161_A	0.704	0.72
13_D	419_Q	0.704	0.72
69_I	389_A	0.701	0.72
196_G	200_E	0.699	0.72
312_M	383_I	0.697	0.71
123_I	316_V	0.694	0.71
28_F	68_S	0.693	0.71
325_F	329_V	0.692	0.71
403_L	406_V	0.692	0.71
84_I	317_A	0.690	0.71
69_I	219_L	0.686	0.70
25_L	191_I	0.684	0.70
418_S	422_K	0.682	0.70
63_A	265_K	0.680	0.70
359_R	363_I	0.680	0.70
28_F	63_A	0.679	0.69
241_I	350_V	0.679	0.69
275_I	399_G	0.676	0.69
191_I	402_L	0.676	0.69
199_Y	203_F	0.675	0.69
277_A	315_Y	0.674	0.69
71_A	109_L	0.674	0.69
67_F	272_I	0.671	0.69
35_P	191_I	0.671	0.69
420_L	423_R	0.671	0.69
227_V	397_I	0.670	0.68
185_A	226_A	0.670	0.68
89_M	329_V	0.669	0.68
68_S	118_I	0.669	0.68
294_N	313_A	0.669	0.68
107_R	247_K	0.667	0.68
315_Y	342_K	0.665	0.68
78_I	322_F	0.663	0.68
46_A	150_L	0.663	0.68
125_A	129_S	0.663	0.68
311_G	328_F	0.662	0.68
275_I	322_F	0.661	0.67
5_I	50_M	0.661	0.67
251_R	256_G	0.661	0.67
184_F	188_V	0.660	0.67
304_F	311_G	0.658	0.67
328_F	365_Y	0.658	0.67
186_G	189_S	0.657	0.67
110_A	386_I	0.656	0.67
336_M	425_Y	0.655	0.67
334_E	354_K	0.655	0.67
69_I	162_F	0.655	0.67
242_A	246_A	0.654	0.67
112_F	269_A	0.654	0.67
231_V	241_I	0.652	0.66
410_L	414_K	0.652	0.66
407_G	411_E	0.651	0.66
271_V	276_F	0.649	0.66
14_I	175_V	0.649	0.66
129_S	149_Y	0.648	0.66
20_F	267_N	0.648	0.66
47_Q	50_M	0.647	0.66
86_L	325_F	0.646	0.66
14_I	126_L	0.644	0.65
385_F	391_L	0.644	0.65
354_K	357_Q	0.644	0.65
85_Q	182_I	0.644	0.65
98_W	102_G	0.643	0.65
28_F	97_E	0.641	0.65
34_I	377_V	0.640	0.65
84_I	272_I	0.639	0.65
295_D	299_W	0.639	0.65
69_I	103_E	0.639	0.65
57_N	63_A	0.638	0.65
365_Y	369_F	0.638	0.65
265_K	270_G	0.637	0.65
281_L	285_R	0.635	0.64
315_Y	379_S	0.634	0.64
11_V	15_R	0.633	0.64
216_K	220_L	0.632	0.64
77_Y	276_F	0.632	0.64
122_F	126_L	0.631	0.64
79_T	274_V	0.631	0.64
43_A	68_S	0.630	0.64
181_I	378_I	0.630	0.64
89_M	243_I	0.630	0.64
14_I	315_Y	0.629	0.64
24_M	163_L	0.629	0.64
243_I	340_L	0.628	0.63
28_F	34_I	0.628	0.63
241_I	262_L	0.628	0.63
346_Y	407_G	0.626	0.63
274_V	278_V	0.625	0.63
317_A	320_I	0.625	0.63
265_K	330_Q	0.624	0.63
215_V	292_G	0.623	0.63
79_T	316_V	0.623	0.63
266_V	269_A	0.623	0.63
222_I	294_N	0.623	0.63
274_V	407_G	0.622	0.63
6_S	336_M	0.621	0.63
268_P	368_T	0.621	0.63
126_L	130_Y	0.620	0.62
94_K	241_I	0.619	0.62
219_L	222_I	0.619	0.62
346_Y	418_S	0.617	0.62
333_P	360_I	0.615	0.62
247_K	261_H	0.614	0.62
188_V	240_K	0.613	0.62
248_G	251_R	0.612	0.61
319_I	373_I	0.610	0.61
68_S	428_F	0.607	0.61
88_Q	91_V	0.605	0.61
23_L	27_V	0.604	0.60
56_L	360_I	0.604	0.60
143_K	226_A	0.602	0.60
235_Q	238_V	0.601	0.60
39_V	42_E	0.601	0.60
183_I	186_G	0.600	0.60
321_A	324_Y	0.599	0.60
99_S	395_A	0.598	0.60
173_H	398_G	0.598	0.60
20_F	265_K	0.596	0.59
341_K	363_I	0.595	0.59
360_I	367_L	0.595	0.59
28_F	73_G	0.595	0.59
228_I	390_G	0.594	0.59
254_A	257_G	0.593	0.59
114_R	271_V	0.593	0.59
118_I	290_F	0.593	0.59
11_V	417_E	0.592	0.59
220_L	332_N	0.592	0.59
355_M	377_V	0.591	0.59
53_F	372_S	0.591	0.59
251_R	254_A	0.591	0.59
94_K	112_F	0.590	0.59
45_Q	48_S	0.590	0.59
81_S	275_I	0.590	0.59
43_A	150_L	0.589	0.59
16_N	23_L	0.588	0.58
151_I	154_L	0.588	0.58
308_H	312_M	0.587	0.58
239_R	363_I	0.586	0.58
46_A	298_K	0.585	0.58
74_I	164_M	0.585	0.58
103_E	225_L	0.584	0.58
14_I	416_L	0.583	0.58
181_I	412_T	0.582	0.58
58_T	229_V	0.581	0.58
175_V	181_I	0.581	0.58
11_V	14_I	0.580	0.57
181_I	185_A	0.580	0.57
78_I	377_V	0.580	0.57
141_I	148_T	0.580	0.57
51_G	306_N	0.579	0.57
54_D	160_T	0.577	0.57
315_Y	380_I	0.577	0.57
126_L	228_I	0.577	0.57
58_T	79_T	0.576	0.57
269_A	381_L	0.575	0.57
386_I	395_A	0.574	0.57
369_F	384_F	0.574	0.57
91_V	112_F	0.573	0.56
93_P	96_T	0.573	0.56
99_S	106_R	0.571	0.56
377_V	381_L	0.571	0.56
274_V	340_L	0.570	0.56
12_S	15_R	0.570	0.56
11_V	422_K	0.569	0.56
215_V	388_F	0.569	0.56
85_Q	325_F	0.568	0.56
272_I	323_T	0.567	0.56
141_I	152_I	0.567	0.56
107_R	114_R	0.566	0.56
81_S	163_L	0.566	0.56
181_I	228_I	0.565	0.55
121_G	161_A	0.563	0.55
333_P	364_L	0.563	0.55
57_N	62_G	0.563	0.55
28_F	182_I	0.563	0.55
30_I	34_I	0.561	0.55
122_F	395_A	0.560	0.55
65_Y	347_I	0.560	0.55
326_Y	345_G	0.560	0.55
29_R	189_S	0.560	0.55
202_Q	212_I	0.559	0.55
200_E	204_V	0.558	0.55
158_G	162_F	0.557	0.54
110_A	161_A	0.556	0.54
224_I	227_V	0.554	0.54
118_I	378_I	0.553	0.54
78_I	400_T	0.550	0.53
32_A	421_V	0.550	0.53
36_V	73_G	0.548	0.53
64_L	71_A	0.548	0.53
168_E	329_V	0.548	0.53
8_F	14_I	0.548	0.53
44_L	51_G	0.547	0.53
296_V	317_A	0.547	0.53
197_Q	289_S	0.547	0.53
271_V	322_F	0.546	0.53
315_Y	378_I	0.546	0.53
64_L	89_M	0.545	0.53
117_T	227_V	0.543	0.53
286_T	336_M	0.543	0.53
101_Q	104_V	0.542	0.52
190_S	194_T	0.541	0.52
78_I	271_V	0.540	0.52
188_V	191_I	0.540	0.52
74_I	81_S	0.537	0.52
340_L	343_Q	0.536	0.52
33_F	68_S	0.536	0.52
30_I	285_R	0.536	0.52
73_G	91_V	0.535	0.51
167_G	327_A	0.535	0.51
190_S	381_L	0.534	0.51
117_T	270_G	0.534	0.51
17_K	173_H	0.533	0.51
206_S	212_I	0.533	0.51
224_I	395_A	0.532	0.51
278_V	307_T	0.532	0.51
134_N	139_M	0.532	0.51
224_I	385_F	0.532	0.51
32_A	332_N	0.531	0.51
154_L	384_F	0.531	0.51
185_A	329_V	0.531	0.51
10_R	258_Q	0.531	0.51
19_I	92_V	0.530	0.51
233_F	300_I	0.530	0.51
229_V	233_F	0.529	0.51
199_Y	313_A	0.529	0.51
68_S	190_S	0.529	0.51
51_G	67_F	0.528	0.51
320_I	369_F	0.528	0.51
304_F	307_T	0.527	0.50
192_P	239_R	0.527	0.50
140_L	314_I	0.527	0.50
80_A	236_Q	0.527	0.50
424_N	429_M	0.527	0.50
273_P	375_L	0.526	0.50
66_Q	70_F	0.526	0.50
247_K	252_S	0.526	0.50
241_I	348_P	0.524	0.50
275_I	411_E	0.523	0.50
243_I	339_N	0.522	0.50
166_L	182_I	0.522	0.50
266_V	413_M	0.521	0.50
181_I	387_Q	0.521	0.50
235_Q	274_V	0.520	0.50
272_I	319_I	0.520	0.50
49_Q	196_G	0.519	0.49
224_I	228_I	0.519	0.49
239_R	348_P	0.518	0.49
217_V	405_V	0.517	0.49
184_F	326_Y	0.516	0.49
245_Y	322_F	0.514	0.49
249_T	255_G	0.513	0.49
346_Y	422_K	0.511	0.48
166_L	347_I	0.511	0.48
180_S	322_F	0.510	0.48
234_I	266_V	0.510	0.48
288_A	429_M	0.509	0.48
59_F	148_T	0.509	0.48
191_I	224_I	0.508	0.48
294_N	338_D	0.508	0.48
369_F	373_I	0.508	0.48
65_Y	225_L	0.507	0.48
132_F	231_V	0.506	0.48
19_I	212_I	0.506	0.48
156_L	397_I	0.506	0.48
133_N	144_S	0.505	0.48
95_F	360_I	0.503	0.47
124_Q	366_R	0.502	0.47
12_S	36_V	0.502	0.47
268_P	374_F	0.501	0.47
8_F	367_L	0.501	0.47
163_L	269_A	0.500	0.47
61_G	276_F	0.500	0.47

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2zjsY	2	0.9466	100	0.046	Contact Map
3dinC	1	0.9165	100	0.051	Contact Map
3dl8G	1	0.9327	100	0.053	Contact Map
3j01A	1	0.9768	100	0.073	Contact Map
1rh5A	1	0.8608	100	0.118	Contact Map
3mp7A	1	0.7633	100	0.123	Contact Map
2ww9A	1	0.9281	100	0.151	Contact Map
4w251	1	0.8074	100	0.201	Contact Map
3giaA	1	0.5128	8.2	0.977	Contact Map
3ar4A	1	0.2807	4.5	0.98	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0123 seconds.