YUXH - BACSU - GREMLIN Contacts

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YUXH - Uncharacterized protein YuxH

UniProt:	P14203	Sequences: MRVFVARQPIFNRKEQVVAYELLYRESEENVYSAKDGDQATTDLVINSFLNIGIEKLTEGKRCFVNFTESLMFSNLPTSFNPKQLVIEILEDIPITPALISRCKELKKMGYMLALDDFYAINPQDEDLLEKLMSYIDILKIDFLKTTRMERRTILQTYGCRGLIFLAEKVETRKEYKQAVQDGFQLFQGYFFSEPRIISGHDLSTHFYSYYELLNELSKEQPNIKRVTEYIERDLSLSYQILKFLNSSHSRLSQKIESIQQAIMLLGFNEIKRWIYILSFKDLSRKGHSSKHEIIKISLIRAKLCELLARKTSRPQPASYMLIGMFSLIDTLLHREIEEIVQELPLKDEVGQALLGHQNDYYQMLELVKLIESNNWDTCSELGNQLDKEEAYECYLEALEWCHNLMDAK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	409 (391)
Sequences:	1095 (908)
Seq/√Len:	45.9

BACSU - YUXH

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
69_E	96_T	5.259	1.00
107_K	137_D	5.007	1.00
357_H	369_K	4.137	1.00
12_N	16_Q	3.803	1.00
290_S	334_H	3.662	1.00
138_I	166_L	3.581	1.00
41_T	44_L	3.307	1.00
86_V	114_A	3.154	1.00
356_G	359_N	3.106	1.00
131_K	134_S	3.059	1.00
128_L	131_K	2.936	1.00
144_L	175_E	2.904	1.00
67_F	87_I	2.897	1.00
58_T	63_C	2.878	1.00
172_T	175_E	2.862	1.00
130_E	134_S	2.807	1.00
164_I	186_L	2.772	1.00
228_T	232_E	2.730	1.00
320_Y	361_Y	2.729	1.00
129_L	134_S	2.718	1.00
143_F	179_A	2.703	1.00
294_I	331_T	2.682	1.00
216_E	226_R	2.661	1.00
321_M	401_W	2.592	1.00
40_A	44_L	2.494	1.00
165_F	184_F	2.455	1.00
88_E	140_K	2.429	1.00
91_E	168_E	2.425	1.00
91_E	117_D	2.409	1.00
90_L	168_E	2.356	1.00
359_N	362_Y	2.303	1.00
62_R	112_M	2.298	1.00
13_R	180_V	2.255	1.00
89_I	93_I	2.251	1.00
356_G	362_Y	2.218	1.00
311_K	390_E	2.119	1.00
90_L	117_D	2.111	1.00
330_D	337_I	2.086	1.00
112_M	138_I	2.071	1.00
88_E	168_E	2.064	0.99
303_K	401_W	2.042	0.99
128_L	134_S	2.039	0.99
80_F	85_L	2.017	0.99
375_N	378_T	2.007	0.99
11_F	293_E	2.002	0.99
90_L	166_L	2.000	0.99
64_F	138_I	1.988	0.99
25_R	171_E	1.971	0.99
320_Y	364_M	1.952	0.99
212_E	233_R	1.941	0.99
301_R	372_E	1.903	0.99
291_K	334_H	1.866	0.99
141_I	184_F	1.845	0.99
247_S	250_S	1.840	0.99
216_E	230_Y	1.819	0.99
89_I	113_L	1.818	0.99
293_E	296_K	1.814	0.99
30_N	33_S	1.798	0.99
90_L	169_K	1.785	0.99
352_Q	358_Q	1.782	0.98
309_A	320_Y	1.765	0.98
261_Q	264_M	1.764	0.98
164_I	185_Q	1.753	0.98
348_D	352_Q	1.726	0.98
25_R	66_N	1.724	0.98
371_I	395_Y	1.719	0.98
117_D	168_E	1.716	0.98
228_T	260_Q	1.715	0.98
171_E	190_Y	1.713	0.98
18_V	64_F	1.703	0.98
169_K	190_Y	1.668	0.98
41_T	46_I	1.668	0.98
303_K	306_E	1.667	0.98
337_I	354_L	1.664	0.98
155_L	165_F	1.656	0.98
357_H	362_Y	1.652	0.98
176_Y	191_F	1.646	0.97
303_K	307_L	1.639	0.97
353_A	359_N	1.633	0.97
88_E	91_E	1.617	0.97
103_C	113_L	1.617	0.97
326_F	329_I	1.617	0.97
64_F	86_V	1.615	0.97
139_L	163_L	1.578	0.97
301_R	327_S	1.572	0.97
140_K	188_Q	1.568	0.97
13_R	185_Q	1.566	0.97
66_N	88_E	1.562	0.96
93_I	99_L	1.550	0.96
89_I	103_C	1.545	0.96
66_N	168_E	1.525	0.96
41_T	49_F	1.506	0.96
238_S	259_I	1.497	0.96
254_Q	261_Q	1.493	0.95
224_I	263_I	1.477	0.95
27_S	30_N	1.468	0.95
159_G	185_Q	1.456	0.95
91_E	116_D	1.452	0.95
41_T	45_V	1.421	0.94
18_V	186_L	1.415	0.94
21_E	66_N	1.413	0.94
216_E	219_K	1.396	0.93
147_T	150_E	1.396	0.93
25_R	190_Y	1.386	0.93
75_N	105_E	1.386	0.93
66_N	116_D	1.357	0.92
66_N	91_E	1.352	0.92
395_Y	399_L	1.349	0.92
305_C	323_I	1.339	0.92
15_E	176_Y	1.327	0.92
387_D	390_E	1.312	0.91
323_I	350_V	1.311	0.91
226_R	229_E	1.310	0.91
140_K	168_E	1.306	0.91
32_Y	35_K	1.303	0.91
167_A	184_F	1.300	0.91
32_Y	36_D	1.292	0.91
177_K	180_V	1.292	0.91
393_E	397_E	1.291	0.90
255_K	348_D	1.285	0.90
370_L	375_N	1.278	0.90
66_N	140_K	1.278	0.90
239_Y	329_I	1.276	0.90
248_S	251_R	1.251	0.89
40_A	46_I	1.251	0.89
270_E	273_R	1.242	0.89
25_R	169_K	1.241	0.89
170_V	192_F	1.233	0.88
148_R	178_Q	1.224	0.88
15_E	191_F	1.206	0.87
6_A	25_R	1.201	0.87
88_E	188_Q	1.200	0.87
222_P	268_F	1.193	0.87
305_C	368_V	1.186	0.86
302_A	325_M	1.185	0.86
67_F	77_P	1.184	0.86
234_D	240_Q	1.184	0.86
5_V	57_L	1.184	0.86
11_F	192_F	1.176	0.86
66_N	188_Q	1.175	0.86
19_A	61_K	1.170	0.86
23_L	169_K	1.169	0.85
228_T	263_I	1.165	0.85
304_L	368_V	1.164	0.85
391_A	394_C	1.152	0.85
116_D	168_E	1.149	0.84
143_F	184_F	1.145	0.84
298_S	326_F	1.142	0.84
66_N	190_Y	1.140	0.84
7_R	20_Y	1.139	0.84
15_E	173_R	1.138	0.84
66_N	171_E	1.132	0.84
319_S	350_V	1.132	0.84
73_F	102_R	1.123	0.83
227_V	263_I	1.118	0.83
129_L	132_L	1.115	0.83
142_D	169_K	1.113	0.83
265_L	274_W	1.106	0.82
252_L	256_I	1.105	0.82
19_A	48_S	1.099	0.82
293_E	325_M	1.099	0.82
42_T	45_V	1.098	0.82
66_N	169_K	1.097	0.82
91_E	166_L	1.096	0.82
167_A	170_V	1.096	0.82
176_Y	192_F	1.094	0.81
143_F	175_E	1.079	0.81
331_T	334_H	1.075	0.80
298_S	328_L	1.072	0.80
268_F	272_K	1.063	0.79
41_T	48_S	1.061	0.79
37_G	68_T	1.060	0.79
303_K	321_M	1.056	0.79
353_A	365_L	1.051	0.79
173_R	177_K	1.043	0.78
151_R	184_F	1.037	0.78
114_A	168_E	1.037	0.78
49_F	80_F	1.023	0.77
308_L	336_E	1.018	0.76
176_Y	187_F	1.014	0.76
190_Y	195_P	1.010	0.76
45_V	49_F	1.010	0.76
242_L	326_F	1.009	0.76
12_N	333_L	1.008	0.76
90_L	140_K	0.994	0.75
72_M	342_Q	0.990	0.74
139_L	164_I	0.987	0.74
263_I	275_I	0.987	0.74
65_V	85_L	0.978	0.74
91_E	118_F	0.978	0.74
304_L	371_I	0.974	0.73
305_C	364_M	0.974	0.73
240_Q	282_D	0.973	0.73
177_K	181_Q	0.958	0.72
341_V	344_L	0.957	0.72
345_P	351_G	0.954	0.72
310_R	317_P	0.945	0.71
245_L	256_I	0.944	0.71
319_S	322_L	0.939	0.70
44_L	48_S	0.939	0.70
328_L	331_T	0.938	0.70
144_L	169_K	0.937	0.70
300_I	402_C	0.937	0.70
23_L	171_E	0.934	0.70
73_F	77_P	0.932	0.70
302_A	321_M	0.927	0.69
308_L	364_M	0.927	0.69
166_L	169_K	0.924	0.69
341_V	354_L	0.922	0.69
370_L	378_T	0.921	0.69
272_K	305_C	0.918	0.69
337_I	355_L	0.916	0.69
142_D	168_E	0.915	0.68
25_R	168_E	0.913	0.68
97_P	131_K	0.913	0.68
6_A	197_I	0.910	0.68
169_K	195_P	0.909	0.68
44_L	274_W	0.899	0.67
23_L	168_E	0.899	0.67
214_L	355_L	0.898	0.67
232_E	306_E	0.898	0.67
347_K	350_V	0.892	0.66
171_E	195_P	0.885	0.66
91_E	169_K	0.885	0.66
41_T	195_P	0.879	0.65
170_V	375_N	0.876	0.65
11_F	17_V	0.875	0.65
81_N	166_L	0.874	0.65
114_A	117_D	0.873	0.65
352_Q	357_H	0.871	0.65
33_S	38_D	0.869	0.64
337_I	341_V	0.867	0.64
235_L	326_F	0.867	0.64
191_F	294_I	0.866	0.64
268_F	274_W	0.864	0.64
4_F	27_S	0.861	0.64
210_Y	236_S	0.859	0.63
96_T	190_Y	0.858	0.63
116_D	140_K	0.856	0.63
71_L	274_W	0.850	0.63
91_E	142_D	0.849	0.63
342_Q	351_G	0.843	0.62
114_A	140_K	0.840	0.62
141_I	165_F	0.838	0.62
210_Y	277_I	0.837	0.61
336_E	339_E	0.836	0.61
244_F	273_R	0.835	0.61
307_L	401_W	0.834	0.61
294_I	337_I	0.833	0.61
8_Q	190_Y	0.831	0.61
23_L	195_P	0.829	0.61
17_V	293_E	0.826	0.60
376_W	379_C	0.825	0.60
45_V	80_F	0.825	0.60
184_F	281_K	0.822	0.60
140_K	190_Y	0.822	0.60
8_Q	25_R	0.820	0.60
190_Y	193_S	0.818	0.60
90_L	93_I	0.816	0.59
90_L	114_A	0.815	0.59
305_C	325_M	0.813	0.59
117_D	140_K	0.806	0.59
44_L	47_N	0.804	0.58
93_I	168_E	0.803	0.58
161_R	256_I	0.803	0.58
231_I	259_I	0.802	0.58
88_E	169_K	0.801	0.58
18_V	61_K	0.799	0.58
211_Y	215_N	0.797	0.58
90_L	116_D	0.796	0.58
23_L	91_E	0.795	0.57
73_F	99_L	0.795	0.57
273_R	306_E	0.794	0.57
168_E	190_Y	0.793	0.57
30_N	197_I	0.792	0.57
143_F	172_T	0.790	0.57
102_R	105_E	0.790	0.57
21_E	188_Q	0.789	0.57
235_L	298_S	0.788	0.57
158_Y	184_F	0.788	0.57
252_L	265_L	0.786	0.57
120_A	139_L	0.785	0.57
6_A	23_L	0.784	0.56
390_E	397_E	0.780	0.56
81_N	106_L	0.778	0.56
234_D	326_F	0.777	0.56
178_Q	181_Q	0.772	0.55
23_L	66_N	0.771	0.55
17_V	20_Y	0.769	0.55
292_H	299_L	0.768	0.55
270_E	318_A	0.766	0.55
58_T	204_S	0.764	0.54
220_E	245_L	0.763	0.54
277_I	303_K	0.762	0.54
97_P	182_D	0.762	0.54
33_S	274_W	0.761	0.54
214_L	304_L	0.761	0.54
156_Q	159_G	0.760	0.54
141_I	146_T	0.758	0.54
306_E	401_W	0.756	0.54
42_T	49_F	0.756	0.54
91_E	140_K	0.755	0.54
140_K	169_K	0.753	0.53
10_I	19_A	0.753	0.53
340_I	343_E	0.752	0.53
235_L	247_S	0.751	0.53
353_A	362_Y	0.750	0.53
83_K	109_M	0.749	0.53
225_K	260_Q	0.747	0.53
56_K	343_E	0.747	0.53
242_L	345_P	0.746	0.53
82_P	139_L	0.744	0.53
89_I	198_I	0.742	0.52
102_R	106_L	0.738	0.52
245_L	252_L	0.738	0.52
6_A	190_Y	0.736	0.52
21_E	116_D	0.735	0.52
49_F	71_L	0.734	0.52
117_D	190_Y	0.731	0.51
23_L	116_D	0.728	0.51
88_E	116_D	0.727	0.51
67_F	71_L	0.725	0.51
371_I	376_W	0.719	0.50
9_P	259_I	0.718	0.50
241_I	245_L	0.716	0.50
248_S	299_L	0.716	0.50
72_M	102_R	0.714	0.50
40_A	45_V	0.714	0.50
23_L	190_Y	0.713	0.49
87_I	102_R	0.712	0.49
90_L	138_I	0.708	0.49
49_F	78_T	0.708	0.49
168_E	195_P	0.706	0.49
319_S	349_E	0.703	0.49
367_L	382_L	0.703	0.49
213_L	329_I	0.701	0.48
238_S	244_F	0.700	0.48
263_I	271_I	0.698	0.48
151_R	165_F	0.695	0.48
6_A	95_I	0.695	0.48
66_N	90_L	0.694	0.48
143_F	170_V	0.693	0.48
367_L	379_C	0.692	0.47
106_L	113_L	0.691	0.47
21_E	140_K	0.690	0.47
200_G	278_L	0.689	0.47
24_Y	191_F	0.689	0.47
256_I	265_L	0.688	0.47
24_Y	192_F	0.687	0.47
242_L	258_S	0.686	0.47
40_A	48_S	0.685	0.47
198_I	203_L	0.685	0.47
43_D	281_K	0.681	0.46
157_T	162_G	0.679	0.46
263_I	357_H	0.679	0.46
222_P	298_S	0.677	0.46
65_V	346_L	0.677	0.46
165_F	235_L	0.676	0.46
221_Q	268_F	0.673	0.46
115_L	188_Q	0.672	0.45
165_F	278_L	0.671	0.45
174_K	314_R	0.670	0.45
238_S	242_L	0.669	0.45
65_V	333_L	0.666	0.45
335_R	340_I	0.665	0.45
316_Q	361_Y	0.664	0.45
99_L	350_V	0.660	0.44
271_I	275_I	0.660	0.44
6_A	66_N	0.658	0.44
400_E	404_N	0.657	0.44
87_I	111_Y	0.657	0.44
90_L	115_L	0.656	0.44
363_Q	398_A	0.655	0.44
85_L	341_V	0.649	0.43
171_E	188_Q	0.648	0.43
115_L	183_G	0.648	0.43
297_I	372_E	0.648	0.43
77_P	111_Y	0.647	0.43
6_A	171_E	0.647	0.43
244_F	250_S	0.646	0.43
66_N	117_D	0.645	0.43
57_L	87_I	0.644	0.43
357_H	389_E	0.643	0.43
338_E	342_Q	0.642	0.43
224_I	268_F	0.642	0.43
371_I	399_L	0.641	0.42
230_Y	233_R	0.639	0.42
23_L	40_A	0.635	0.42
159_G	162_G	0.635	0.42
40_A	171_E	0.634	0.42
158_Y	326_F	0.634	0.42
33_S	36_D	0.633	0.42
151_R	179_A	0.633	0.42
69_E	73_F	0.631	0.42
301_R	328_L	0.630	0.41
269_N	272_K	0.628	0.41
228_T	369_K	0.628	0.41
306_E	321_M	0.627	0.41
66_N	195_P	0.626	0.41
72_M	113_L	0.625	0.41
90_L	171_E	0.625	0.41
95_I	165_F	0.625	0.41
25_R	88_E	0.624	0.41
8_Q	88_E	0.623	0.41
318_A	397_E	0.623	0.41
299_L	397_E	0.622	0.41
245_L	265_L	0.617	0.40
88_E	190_Y	0.616	0.40
223_N	226_R	0.616	0.40
18_V	138_I	0.616	0.40
202_D	213_L	0.616	0.40
8_Q	116_D	0.615	0.40
168_E	171_E	0.615	0.40
5_V	245_L	0.614	0.40
100_I	373_S	0.614	0.40
8_Q	140_K	0.614	0.40
41_T	47_N	0.614	0.40
320_Y	323_I	0.612	0.40
305_C	345_P	0.612	0.40
139_L	322_L	0.612	0.40
143_F	146_T	0.611	0.40
147_T	153_T	0.610	0.40
44_L	49_F	0.610	0.40
200_G	274_W	0.610	0.40
69_E	93_I	0.607	0.39
8_Q	171_E	0.606	0.39
26_E	274_W	0.606	0.39
304_L	308_L	0.603	0.39
235_L	239_Y	0.603	0.39
33_S	141_I	0.602	0.39
25_R	116_D	0.602	0.39
118_F	168_E	0.601	0.39
46_I	49_F	0.601	0.39
352_Q	356_G	0.598	0.38
48_S	53_G	0.594	0.38
305_C	371_I	0.594	0.38
364_M	369_K	0.594	0.38
172_T	242_L	0.593	0.38
19_A	347_K	0.592	0.38
100_I	156_Q	0.592	0.38
297_I	300_I	0.591	0.38
67_F	329_I	0.591	0.38
235_L	332_L	0.591	0.38
100_I	132_L	0.589	0.38
8_Q	23_L	0.589	0.38
88_E	171_E	0.588	0.37
160_C	166_L	0.585	0.37
78_T	273_R	0.584	0.37
168_E	188_Q	0.583	0.37
139_L	224_I	0.582	0.37
69_E	99_L	0.581	0.37
66_N	166_L	0.580	0.37
155_L	201_H	0.579	0.37
35_K	38_D	0.579	0.37
52_I	63_C	0.579	0.37
69_E	94_P	0.579	0.37
294_I	334_H	0.578	0.37
298_S	304_L	0.578	0.37
114_A	171_E	0.577	0.36
319_S	344_L	0.577	0.36
9_P	218_S	0.577	0.36
248_S	252_L	0.576	0.36
173_R	191_F	0.576	0.36
307_L	311_K	0.576	0.36
10_I	194_E	0.575	0.36
13_R	162_G	0.575	0.36
312_T	348_D	0.574	0.36
6_A	24_Y	0.573	0.36
90_L	144_L	0.572	0.36
398_A	401_W	0.572	0.36
72_M	99_L	0.571	0.36
17_V	374_N	0.571	0.36
142_D	170_V	0.570	0.36
141_I	187_F	0.569	0.36
251_R	274_W	0.567	0.36
226_R	269_N	0.566	0.35
148_R	182_D	0.566	0.35
130_E	303_K	0.565	0.35
53_G	57_L	0.565	0.35
15_E	321_M	0.565	0.35
362_Y	366_E	0.564	0.35
90_L	118_F	0.561	0.35
91_E	144_L	0.560	0.35
303_K	318_A	0.559	0.35
292_H	346_L	0.558	0.35
30_N	36_D	0.557	0.35
269_N	336_E	0.557	0.35
368_V	395_Y	0.555	0.34
116_D	171_E	0.555	0.34
327_S	372_E	0.554	0.34
24_Y	92_D	0.554	0.34
307_L	394_C	0.554	0.34
231_I	306_E	0.553	0.34
51_N	322_L	0.553	0.34
41_T	169_K	0.553	0.34
5_V	197_I	0.551	0.34
45_V	65_V	0.551	0.34
60_G	205_T	0.548	0.34
79_S	213_L	0.547	0.34
97_P	128_L	0.547	0.34
297_I	328_L	0.546	0.34
256_I	261_Q	0.545	0.34
67_F	283_L	0.544	0.34
81_N	266_L	0.543	0.33
356_G	366_E	0.543	0.33
87_I	260_Q	0.542	0.33
156_Q	161_R	0.541	0.33
128_L	229_E	0.541	0.33
11_F	340_I	0.540	0.33
229_E	338_E	0.539	0.33
88_E	167_A	0.539	0.33
106_L	243_K	0.539	0.33
24_Y	399_L	0.538	0.33
4_F	30_N	0.538	0.33
210_Y	275_I	0.537	0.33
75_N	102_R	0.535	0.33
391_A	402_C	0.535	0.33
218_S	299_L	0.534	0.33
182_D	349_E	0.534	0.33
23_L	41_T	0.534	0.33
207_F	214_L	0.533	0.33
114_A	169_K	0.533	0.33
108_K	162_G	0.532	0.32
77_P	87_I	0.532	0.32
78_T	109_M	0.532	0.32
307_L	387_D	0.532	0.32
214_L	365_L	0.531	0.32
183_G	187_F	0.530	0.32
129_L	271_I	0.530	0.32
58_T	263_I	0.530	0.32
197_I	331_T	0.530	0.32
103_C	204_S	0.529	0.32
247_S	340_I	0.529	0.32
184_F	187_F	0.528	0.32
24_Y	41_T	0.528	0.32
246_N	262_A	0.528	0.32
13_R	186_L	0.526	0.32
37_G	132_L	0.526	0.32
342_Q	384_N	0.525	0.32
155_L	264_M	0.524	0.32
118_F	134_S	0.523	0.32
72_M	204_S	0.522	0.32
144_L	171_E	0.522	0.32
333_L	340_I	0.521	0.32
57_L	63_C	0.521	0.32
78_T	270_E	0.517	0.31
6_A	169_K	0.517	0.31
54_I	391_A	0.514	0.31
14_K	178_Q	0.514	0.31
13_R	112_M	0.514	0.31
22_L	190_Y	0.513	0.31
116_D	188_Q	0.511	0.31
265_L	268_F	0.511	0.31
360_D	386_L	0.511	0.31
43_D	46_I	0.511	0.31
216_E	371_I	0.510	0.31
84_Q	201_H	0.510	0.31
131_K	377_D	0.509	0.31
95_I	100_I	0.507	0.30
49_F	54_I	0.507	0.30
51_N	59_E	0.507	0.30
305_C	320_Y	0.507	0.30
8_Q	66_N	0.506	0.30
52_I	57_L	0.506	0.30
77_P	102_R	0.506	0.30
175_E	179_A	0.506	0.30
140_K	171_E	0.505	0.30
169_K	197_I	0.505	0.30
210_Y	323_I	0.505	0.30
140_K	193_S	0.505	0.30
171_E	194_E	0.504	0.30
179_A	184_F	0.504	0.30
245_L	249_H	0.504	0.30
183_G	195_P	0.504	0.30
156_Q	339_E	0.503	0.30
300_I	395_Y	0.503	0.30
319_S	347_K	0.503	0.30
19_A	192_F	0.502	0.30
141_I	151_R	0.502	0.30
311_K	394_C	0.502	0.30
322_L	337_I	0.501	0.30
227_V	232_E	0.501	0.30
90_L	119_Y	0.501	0.30
103_C	264_M	0.500	0.30
17_V	399_L	0.500	0.30
85_L	120_A	0.500	0.30

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4j40A	2	0.4914	100	0.736	Contact Map
3pjxA	1	0.4694	100	0.738	Contact Map
4fojA	1	0.4841	100	0.739	Contact Map
3hv8A	1	0.4792	100	0.742	Contact Map
3kzpA	2	0.4719	100	0.746	Contact Map
2r6oA	2	0.5086	100	0.747	Contact Map
4q6jA	4	0.4866	100	0.748	Contact Map
4hjfA	1	0.511	100	0.749	Contact Map
3s83A	1	0.5037	100	0.75	Contact Map
3gfzA	2	0.4988	100	0.75	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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