PUR8 - BACSU - GREMLIN Contacts

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PUR8 - Adenylosuccinate lyase

UniProt:	P12047	Sequences: MIERYSRPEMSAIWTDENRFQAWLEVEILACEAWAELGVIPKEDVKVMRENASFDINRILEIEKDTRHDVVAFTRAVSESLGEERKWVHYGLTSTDVVDTALSYLLKQANDILLKDLERFVDIIKEKAKEHKYTVMMGRTHGVHAEPTTFGLKLALWHEEMKRNLERFKQAKAGIEVGKISGAVGTYANIDPFVEQYVCEKLGLKAAPISTQTLQRDRHADYMATLALIATSIEKFAVEIRGLQKSETREVEEFFAKGQKGSSAMPHKRNPIGSENMTGMARVIRGYMMTAYENVPLWHERDISHSSAERIILPDATIALNYMLNRFSNIVKNLTVFPENMKRNMDRTLGLIYSQRVLLALIDTGLTREEAYDTVQPKAMEAWEKQVPFRELVEAEEKITSRLSPEKIADCFDYNYHLKNVDLIFERLGLA	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	431 (388)
Sequences:	11029 (5836)
Seq/√Len:	296.3

ECOLI - ARLY PUR8 ASPA FUMC
BACSU - PUR8 ARLY ASPA FUMC
HALSA - ARLY Q9HS42 FUMC
SULSO - Q980P8 ARLY FUMC

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
35_A	45_V	3.923	1.00
44_D	87_W	3.431	1.00
36_E	197_Y	3.247	1.00
32_E	201_K	3.216	1.00
340_N	343_R	3.201	1.00
381_E	385_K	3.168	1.00
32_E	49_R	3.164	1.00
111_D	172_K	3.127	1.00
28_I	53_S	3.122	1.00
404_S	407_K	2.864	1.00
22_A	108_Q	2.842	1.00
118_E	165_L	2.755	1.00
230_A	284_I	2.725	1.00
121_V	162_K	2.719	1.00
114_L	169_K	2.645	1.00
110_N	222_Y	2.579	1.00
150_F	336_V	2.530	1.00
174_G	221_D	2.510	1.00
342_K	346_D	2.478	1.00
123_I	332_K	2.429	1.00
114_L	165_L	2.398	1.00
18_N	318_I	2.336	1.00
119_R	328_S	2.335	1.00
283_V	311_I	2.328	1.00
227_A	288_M	2.291	1.00
127_K	130_E	2.291	1.00
35_A	42_K	2.287	1.00
107_K	176_E	2.254	1.00
280_M	322_Y	2.208	1.00
41_P	44_D	2.194	1.00
381_E	396_E	2.157	1.00
133_Y	338_P	2.126	1.00
254_F	335_T	2.075	1.00
197_Y	201_K	2.048	1.00
287_Y	316_A	2.031	1.00
197_Y	200_E	2.026	1.00
121_V	165_L	1.988	1.00
118_E	169_K	1.984	1.00
366_L	374_T	1.960	1.00
194_V	198_V	1.955	1.00
340_N	344_N	1.949	1.00
387_V	395_A	1.937	1.00
126_E	332_K	1.933	1.00
170_Q	174_G	1.923	1.00
126_E	130_E	1.900	1.00
176_E	205_K	1.880	1.00
252_E	337_F	1.879	1.00
343_R	347_R	1.877	1.00
231_T	285_R	1.873	1.00
196_Q	200_E	1.862	1.00
237_A	277_M	1.858	1.00
342_K	415_N	1.855	1.00
390_R	409_A	1.845	1.00
117_L	229_I	1.841	1.00
167_R	221_D	1.833	1.00
42_K	46_K	1.832	1.00
36_E	201_K	1.831	1.00
165_L	169_K	1.816	1.00
178_G	199_C	1.807	1.00
28_I	49_R	1.800	1.00
25_E	108_Q	1.794	1.00
46_K	50_E	1.788	1.00
170_Q	173_A	1.752	1.00
123_I	331_V	1.721	1.00
394_E	405_P	1.711	1.00
413_D	416_Y	1.689	1.00
131_H	134_T	1.689	1.00
125_K	162_K	1.685	1.00
233_I	277_M	1.678	1.00
220_A	295_V	1.643	1.00
164_N	232_S	1.641	1.00
57_N	61_E	1.638	1.00
338_P	342_K	1.631	1.00
121_V	158_H	1.620	1.00
405_P	409_A	1.603	1.00
163_R	211_T	1.598	1.00
374_T	377_P	1.583	1.00
54_F	80_S	1.555	1.00
128_A	158_H	1.525	1.00
407_K	410_D	1.509	1.00
123_I	328_S	1.505	1.00
290_T	307_S	1.501	1.00
58_R	79_E	1.494	1.00
387_V	392_L	1.491	1.00
328_S	332_K	1.484	1.00
163_R	217_D	1.461	1.00
194_V	202_L	1.453	1.00
191_D	194_V	1.447	1.00
45_V	49_R	1.437	1.00
182_G	212_Q	1.436	1.00
227_A	292_Y	1.427	1.00
254_F	333_N	1.420	1.00
127_K	131_H	1.418	1.00
21_Q	25_E	1.417	1.00
289_M	293_E	1.411	1.00
171_A	225_T	1.388	1.00
216_R	305_H	1.363	1.00
70_V	74_T	1.351	1.00
166_E	174_G	1.346	1.00
28_I	32_E	1.345	1.00
125_K	129_K	1.342	1.00
387_V	391_E	1.333	1.00
77_V	81_L	1.328	1.00
374_T	402_R	1.326	1.00
339_E	343_R	1.321	1.00
337_F	340_N	1.319	1.00
223_M	291_A	1.319	1.00
121_V	161_M	1.316	1.00
24_L	70_V	1.315	1.00
252_E	335_T	1.314	1.00
109_A	321_N	1.314	1.00
173_A	205_K	1.311	1.00
114_L	172_K	1.310	1.00
388_P	391_E	1.308	1.00
381_E	392_L	1.307	1.00
77_V	80_S	1.306	1.00
274_S	330_I	1.287	1.00
119_R	332_K	1.282	1.00
327_F	332_K	1.281	1.00
287_Y	315_D	1.266	1.00
116_D	325_N	1.266	1.00
220_A	228_L	1.262	1.00
198_V	202_L	1.262	1.00
224_A	228_L	1.260	1.00
231_T	295_V	1.248	1.00
150_F	154_L	1.244	1.00
76_A	80_S	1.241	1.00
39_V	90_Y	1.240	1.00
106_L	222_Y	1.239	1.00
154_L	157_W	1.232	1.00
285_R	293_E	1.227	1.00
76_A	79_E	1.225	1.00
23_W	97_V	1.224	1.00
123_I	126_E	1.212	1.00
78_S	85_R	1.209	1.00
194_V	203_G	1.207	1.00
47_V	50_E	1.204	1.00
116_D	324_L	1.203	1.00
18_N	109_A	1.199	1.00
191_D	198_V	1.198	1.00
33_A	197_Y	1.197	1.00
157_W	300_E	1.175	1.00
134_T	338_P	1.170	1.00
117_L	161_M	1.169	1.00
222_Y	317_T	1.169	1.00
129_K	132_K	1.159	1.00
120_F	161_M	1.156	1.00
58_R	80_S	1.155	1.00
31_C	40_I	1.155	1.00
131_H	338_P	1.154	1.00
132_K	151_G	1.148	1.00
385_K	392_L	1.147	1.00
180_I	198_V	1.143	1.00
26_V	97_V	1.140	1.00
229_I	320_L	1.138	1.00
291_A	312_I	1.135	1.00
46_K	49_R	1.124	1.00
144_H	247_E	1.118	1.00
150_F	341_M	1.110	1.00
202_L	206_A	1.105	1.00
286_G	290_T	1.105	1.00
183_A	264_A	1.104	1.00
157_W	236_F	1.097	1.00
125_K	158_H	1.092	1.00
223_M	316_A	1.091	1.00
296_P	299_H	1.090	1.00
136_M	341_M	1.089	1.00
240_I	274_S	1.084	1.00
47_V	51_N	1.082	1.00
281_A	285_R	1.080	1.00
168_F	229_I	1.079	1.00
45_V	52_A	1.078	1.00
114_L	118_E	1.070	1.00
120_F	331_V	1.070	1.00
116_D	119_R	1.060	1.00
249_R	340_N	1.060	1.00
116_D	321_N	1.056	1.00
124_I	236_F	1.056	1.00
58_R	76_A	1.051	1.00
288_M	292_Y	1.045	1.00
55_D	58_R	1.044	1.00
234_E	278_T	1.043	1.00
138_G	148_T	1.042	1.00
155_A	208_P	1.040	1.00
380_M	384_E	1.040	1.00
147_P	345_M	1.030	1.00
118_E	122_D	1.025	1.00
233_I	323_M	1.016	1.00
120_F	328_S	1.015	1.00
107_K	172_K	1.014	1.00
133_Y	151_G	1.012	1.00
37_L	197_Y	1.012	1.00
100_T	178_G	1.011	1.00
166_E	173_A	1.010	1.00
110_N	172_K	1.005	1.00
102_L	219_H	1.005	1.00
119_R	327_F	1.004	1.00
144_H	246_S	1.002	1.00
236_F	327_F	1.001	1.00
110_N	168_F	1.000	1.00
225_T	229_I	0.996	1.00
109_A	112_I	0.987	1.00
127_K	154_L	0.984	1.00
172_K	176_E	0.983	1.00
377_P	396_E	0.981	1.00
107_K	111_D	0.979	1.00
177_V	206_A	0.978	1.00
41_P	87_W	0.977	1.00
42_K	45_V	0.969	1.00
381_E	384_E	0.961	1.00
22_A	104_Y	0.960	1.00
123_I	327_F	0.960	1.00
381_E	395_A	0.959	1.00
226_L	320_L	0.958	1.00
366_L	375_V	0.957	1.00
67_R	72_A	0.957	1.00
21_Q	108_Q	0.957	1.00
23_W	26_V	0.953	1.00
134_T	341_M	0.952	1.00
159_E	163_R	0.949	1.00
132_K	149_T	0.948	1.00
365_G	411_C	0.942	1.00
365_G	407_K	0.941	1.00
153_K	300_E	0.937	1.00
378_K	392_L	0.936	1.00
113_L	320_L	0.930	1.00
127_K	331_V	0.930	1.00
17_E	21_Q	0.930	1.00
35_A	46_K	0.925	1.00
117_L	165_L	0.924	1.00
149_T	418_L	0.919	1.00
141_H	275_E	0.918	1.00
43_E	46_K	0.917	1.00
102_L	313_L	0.913	1.00
26_V	100_T	0.913	1.00
170_Q	221_D	0.911	1.00
258_G	329_N	0.908	1.00
21_Q	60_L	0.903	1.00
166_E	170_Q	0.902	1.00
194_V	199_C	0.899	1.00
237_A	330_I	0.898	1.00
91_G	192_P	0.896	1.00
283_V	315_D	0.895	1.00
224_A	288_M	0.894	1.00
242_G	298_W	0.893	1.00
254_F	337_F	0.883	1.00
142_G	242_G	0.880	1.00
242_G	248_T	0.880	1.00
134_T	336_V	0.880	1.00
33_A	37_L	0.879	1.00
173_A	176_E	0.878	1.00
152_L	209_I	0.878	1.00
43_E	47_V	0.878	1.00
223_M	288_M	0.877	1.00
22_A	105_L	0.875	1.00
199_C	207_A	0.874	1.00
124_I	154_L	0.869	1.00
148_T	184_V	0.868	1.00
139_R	144_H	0.868	1.00
135_V	418_L	0.867	1.00
128_A	155_A	0.865	1.00
191_D	202_L	0.865	1.00
107_K	204_L	0.864	1.00
119_R	324_L	0.863	1.00
233_I	327_F	0.863	1.00
284_I	320_L	0.863	1.00
249_R	337_F	0.863	1.00
230_A	320_L	0.862	1.00
32_E	197_Y	0.860	1.00
382_A	392_L	0.857	1.00
36_E	42_K	0.855	1.00
121_V	125_K	0.852	1.00
20_F	59_I	0.849	1.00
57_N	60_L	0.845	1.00
18_N	108_Q	0.842	1.00
124_I	331_V	0.841	1.00
199_C	202_L	0.837	1.00
55_D	80_S	0.834	1.00
199_C	203_G	0.832	1.00
242_G	299_H	0.831	1.00
378_K	393_V	0.830	1.00
254_F	257_K	0.829	1.00
391_E	395_A	0.827	1.00
47_V	84_E	0.824	1.00
394_E	409_A	0.817	1.00
231_T	292_Y	0.817	1.00
130_E	335_T	0.816	1.00
397_E	402_R	0.815	1.00
390_R	405_P	0.814	1.00
215_Q	232_S	0.813	1.00
224_A	292_Y	0.813	1.00
106_L	313_L	0.812	1.00
131_H	336_V	0.811	1.00
198_V	203_G	0.802	1.00
109_A	317_T	0.801	1.00
406_E	410_D	0.801	1.00
67_R	75_R	0.801	1.00
387_V	396_E	0.801	1.00
312_I	316_A	0.800	1.00
124_I	158_H	0.796	0.99
194_V	197_Y	0.795	0.99
122_D	126_E	0.795	0.99
408_I	412_F	0.795	0.99
35_A	40_I	0.794	0.99
58_R	63_E	0.793	0.99
135_V	345_M	0.792	0.99
381_E	387_V	0.788	0.99
163_R	177_V	0.787	0.99
31_C	45_V	0.784	0.99
324_L	328_S	0.784	0.99
123_I	127_K	0.783	0.99
158_H	162_K	0.783	0.99
30_A	92_L	0.779	0.99
285_R	289_M	0.776	0.99
282_R	290_T	0.776	0.99
378_K	389_F	0.774	0.99
178_G	198_V	0.773	0.99
148_T	210_S	0.772	0.99
142_G	245_K	0.770	0.99
112_I	321_N	0.768	0.99
198_V	201_K	0.768	0.99
23_W	70_V	0.767	0.99
58_R	62_I	0.763	0.99
29_L	201_K	0.761	0.99
31_C	48_M	0.757	0.99
47_V	81_L	0.756	0.99
221_D	224_A	0.755	0.99
133_Y	415_N	0.750	0.99
32_E	36_E	0.750	0.99
153_K	243_L	0.750	0.99
390_R	394_E	0.749	0.99
217_D	232_S	0.746	0.99
144_H	348_T	0.745	0.99
219_H	313_L	0.745	0.99
283_V	287_Y	0.744	0.99
75_R	79_E	0.744	0.99
177_V	218_R	0.743	0.99
32_E	45_V	0.743	0.99
51_N	81_L	0.740	0.99
283_V	314_P	0.740	0.99
159_E	208_P	0.737	0.99
277_M	327_F	0.735	0.99
137_M	345_M	0.729	0.99
74_T	88_V	0.729	0.99
116_D	328_S	0.722	0.99
55_D	62_I	0.721	0.99
136_M	153_K	0.720	0.99
139_R	247_E	0.718	0.99
179_K	212_Q	0.716	0.99
56_I	60_L	0.710	0.99
222_Y	226_L	0.710	0.99
82_G	85_R	0.710	0.99
277_M	330_I	0.709	0.99
110_N	171_A	0.708	0.99
284_I	319_A	0.707	0.99
19_R	98_V	0.705	0.99
116_D	320_L	0.704	0.99
378_K	396_E	0.703	0.99
83_E	86_K	0.703	0.99
282_R	294_N	0.703	0.99
124_I	161_M	0.701	0.99
44_D	84_E	0.700	0.99
237_A	274_S	0.699	0.99
52_A	74_T	0.698	0.99
21_Q	56_I	0.697	0.99
385_K	396_E	0.694	0.99
160_E	214_L	0.692	0.99
373_D	377_P	0.691	0.99
131_H	150_F	0.690	0.99
112_I	116_D	0.690	0.99
336_V	341_M	0.687	0.99
166_E	169_K	0.687	0.99
223_M	312_I	0.684	0.98
210_S	298_W	0.683	0.98
240_I	334_L	0.682	0.98
36_E	194_V	0.681	0.98
327_F	331_V	0.681	0.98
366_L	403_L	0.679	0.98
130_E	338_P	0.679	0.98
161_M	164_N	0.678	0.98
346_D	390_R	0.676	0.98
415_N	419_K	0.675	0.98
50_E	81_L	0.675	0.98
222_Y	312_I	0.675	0.98
29_L	32_E	0.675	0.98
160_E	232_S	0.668	0.98
177_V	207_A	0.668	0.98
294_N	307_S	0.666	0.98
103_S	218_R	0.666	0.98
256_A	333_N	0.666	0.98
77_V	88_V	0.666	0.98
219_H	291_A	0.665	0.98
39_V	91_G	0.665	0.98
229_I	323_M	0.664	0.98
134_T	149_T	0.663	0.98
116_D	327_F	0.662	0.98
339_E	342_K	0.662	0.98
31_C	88_V	0.662	0.98
237_A	326_R	0.659	0.98
44_D	47_V	0.653	0.98
238_V	278_T	0.652	0.98
393_V	396_E	0.648	0.98
122_D	125_K	0.648	0.98
164_N	228_L	0.648	0.98
119_R	123_I	0.647	0.98
28_I	45_V	0.645	0.98
387_V	393_V	0.643	0.98
311_I	314_P	0.641	0.98
33_A	198_V	0.640	0.98
251_V	334_L	0.640	0.98
24_L	52_A	0.640	0.98
403_L	411_C	0.640	0.98
377_P	381_E	0.639	0.98
391_E	405_P	0.639	0.98
120_F	327_F	0.639	0.98
106_L	312_I	0.638	0.98
146_E	184_V	0.638	0.98
118_E	121_V	0.636	0.98
392_L	396_E	0.635	0.98
40_I	90_Y	0.635	0.98
196_Q	206_A	0.634	0.97
160_E	215_Q	0.634	0.97
360_A	407_K	0.633	0.97
199_C	206_A	0.632	0.97
290_T	312_I	0.632	0.97
55_D	59_I	0.630	0.97
136_M	148_T	0.628	0.97
128_A	132_K	0.628	0.97
204_L	207_A	0.627	0.97
154_L	341_M	0.627	0.97
211_T	232_S	0.626	0.97
330_I	334_L	0.625	0.97
156_L	235_K	0.624	0.97
176_E	204_L	0.623	0.97
220_A	291_A	0.623	0.97
392_L	395_A	0.621	0.97
110_N	175_I	0.621	0.97
245_K	248_T	0.620	0.97
137_M	249_R	0.619	0.97
129_K	133_Y	0.618	0.97
167_R	170_Q	0.617	0.97
375_V	379_A	0.616	0.97
49_R	52_A	0.615	0.97
323_M	327_F	0.614	0.97
167_R	217_D	0.614	0.97
211_T	217_D	0.612	0.97
360_A	363_D	0.612	0.97
273_G	326_R	0.611	0.97
118_E	162_K	0.609	0.97
14_W	109_A	0.608	0.97
126_E	129_K	0.608	0.97
374_T	396_E	0.608	0.97
220_A	292_Y	0.607	0.97
195_E	202_L	0.605	0.97
110_N	114_L	0.605	0.97
180_I	194_V	0.605	0.97
148_T	186_T	0.605	0.97
214_L	300_E	0.603	0.97
171_A	175_I	0.603	0.97
220_A	224_A	0.602	0.97
134_T	342_K	0.602	0.97
20_F	60_L	0.602	0.97
40_I	44_D	0.601	0.97
219_H	312_I	0.600	0.97
353_Y	417_H	0.599	0.96
111_D	169_K	0.598	0.96
166_E	177_V	0.598	0.96
407_K	411_C	0.595	0.96
403_L	407_K	0.594	0.96
282_R	293_E	0.594	0.96
234_E	293_E	0.593	0.96
277_M	322_Y	0.592	0.96
227_A	231_T	0.592	0.96
33_A	201_K	0.592	0.96
28_I	52_A	0.591	0.96
311_I	315_D	0.589	0.96
199_C	205_K	0.587	0.96
167_R	174_G	0.586	0.96
410_D	416_Y	0.586	0.96
35_A	49_R	0.583	0.96
285_R	292_Y	0.583	0.96
79_E	83_E	0.581	0.96
49_R	53_S	0.581	0.96
58_R	61_E	0.580	0.96
161_M	233_I	0.580	0.96
397_E	404_S	0.578	0.96
230_A	323_M	0.576	0.96
284_I	316_A	0.576	0.96
25_E	201_K	0.576	0.96
37_L	194_V	0.574	0.96
70_V	101_A	0.573	0.95
26_V	101_A	0.572	0.95
113_L	226_L	0.572	0.95
290_T	294_N	0.570	0.95
135_V	414_Y	0.570	0.95
388_P	392_L	0.570	0.95
157_W	160_E	0.569	0.95
410_D	413_D	0.569	0.95
127_K	334_L	0.568	0.95
171_A	222_Y	0.566	0.95
202_L	207_A	0.565	0.95
117_L	323_M	0.564	0.95
87_W	90_Y	0.564	0.95
289_M	292_Y	0.563	0.95
383_W	386_Q	0.563	0.95
161_M	327_F	0.563	0.95
159_E	162_K	0.561	0.95
250_E	344_N	0.560	0.95
164_N	167_R	0.560	0.95
280_M	319_A	0.559	0.95
240_I	326_R	0.558	0.95
290_T	308_A	0.557	0.95
171_A	221_D	0.557	0.95
228_L	295_V	0.555	0.95
237_A	278_T	0.553	0.95
161_M	229_I	0.553	0.95
173_A	177_V	0.551	0.94
139_R	248_T	0.550	0.94
350_G	354_S	0.549	0.94
287_Y	314_P	0.545	0.94
226_L	229_I	0.545	0.94
84_E	87_W	0.544	0.94
162_K	166_E	0.544	0.94
115_K	119_R	0.544	0.94
120_F	123_I	0.544	0.94
25_E	29_L	0.543	0.94
168_F	225_T	0.542	0.94
136_M	243_L	0.542	0.94
382_A	387_V	0.541	0.94
81_L	84_E	0.541	0.94
107_K	205_K	0.540	0.94
149_T	419_K	0.540	0.94
322_Y	326_R	0.540	0.94
258_G	333_N	0.540	0.94
164_N	225_T	0.540	0.94
31_C	49_R	0.539	0.94
191_D	195_E	0.539	0.94
195_E	199_C	0.539	0.94
286_G	289_M	0.539	0.94
114_L	225_T	0.538	0.94
106_L	175_I	0.536	0.94
192_P	202_L	0.535	0.94
338_P	341_M	0.535	0.94
238_V	296_P	0.535	0.94
67_R	256_A	0.534	0.93
125_K	128_A	0.532	0.93
415_N	418_L	0.531	0.93
105_L	317_T	0.530	0.93
167_R	228_L	0.529	0.93
243_L	299_H	0.528	0.93
59_I	62_I	0.528	0.93
154_L	334_L	0.527	0.93
176_E	206_A	0.525	0.93
377_P	384_E	0.525	0.93
44_D	48_M	0.524	0.93
26_V	180_I	0.522	0.93
246_S	249_R	0.522	0.93
94_S	179_K	0.521	0.93
54_F	58_R	0.521	0.93
273_G	330_I	0.520	0.93
179_K	213_T	0.520	0.93
221_D	228_L	0.519	0.92
148_T	152_L	0.517	0.92
234_E	296_P	0.516	0.92
278_T	304_S	0.515	0.92
344_N	347_R	0.513	0.92
394_E	408_I	0.513	0.92
117_L	168_F	0.512	0.92
394_E	410_D	0.510	0.92
153_K	239_E	0.509	0.92
163_R	174_G	0.508	0.92
66_T	71_V	0.508	0.92
24_L	77_V	0.505	0.91
141_H	303_I	0.505	0.91
138_G	185_G	0.505	0.91
351_L	382_A	0.505	0.91
242_G	245_K	0.504	0.91
36_E	200_E	0.502	0.91
48_M	77_V	0.501	0.91
150_F	334_L	0.501	0.91
22_A	25_E	0.500	0.91
91_G	191_D	0.500	0.91

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2pfmA	4	0.9977	100	0.103	Contact Map
1c3cA	4	0.9838	100	0.104	Contact Map
4eeiA	4	0.9582	100	0.113	Contact Map
1re5A	4	0.9954	100	0.122	Contact Map
3c8tA	4	0.9606	100	0.125	Contact Map
1q5nA	4	0.9652	100	0.128	Contact Map
1dofA	4	0.877	100	0.164	Contact Map
1k7wA	4	0.9652	100	0.192	Contact Map
2e9fA	4	0.9675	100	0.193	Contact Map
1tj7A	4	0.9838	100	0.193	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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