TYSY2 - BACSU - GREMLIN Contacts

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TYSY2 - Thymidylate synthase 2

UniProt:	P11044	Sequences: MKQYKDFCRHVLEHGEKKGDRTGTGTISTFGYQMRFNLREGFPMLTTKKLHFKSIAHELLWFLKGDTNVRYLQENGVRIWNEWADENGELGPVYGSQWRSWRGADGETIDQISRLIEDIKTNPNSRRLIVSAWNVGEIDKMALPPCHCLFQFYVSDGKLSCQLYQRSADVFLGVPFNIASYALLTMIIAHVTGLEPGEFIHTFGDVHIYQNHIEQVNLQLERDVRPLPQLRFARKVDSIFNFAFEDFIIEDYDPHPHIKGAVSV	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	264 (262)
Sequences:	3020 (1324)
Seq/√Len:	81.8

ECOLI - TYSY
BACSU - TYSY2 TYSY1

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
11_V	170_V	3.756	1.00
225_R	254_P	3.696	1.00
10_H	14_H	3.580	1.00
63_L	112_I	3.246	1.00
10_H	32_Y	3.038	1.00
238_S	241_N	2.961	1.00
225_R	253_D	2.841	1.00
17_K	27_I	2.821	1.00
118_D	128_L	2.740	1.00
208_I	216_V	2.599	1.00
117_E	121_T	2.587	1.00
51_H	54_S	2.527	1.00
203_F	206_V	2.506	1.00
9_R	13_E	2.470	1.00
161_C	185_T	2.435	1.00
115_L	128_L	2.433	1.00
218_L	221_E	2.421	1.00
78_R	81_N	2.408	1.00
186_M	196_P	2.313	1.00
10_H	29_T	2.285	1.00
52_F	56_A	2.200	1.00
231_R	250_E	2.176	1.00
231_R	248_I	2.156	1.00
70_R	74_E	2.093	1.00
116_I	188_I	2.078	1.00
17_K	210_Q	2.057	1.00
186_M	230_L	2.016	1.00
69_V	73_Q	2.012	1.00
99_R	110_D	2.006	1.00
225_R	255_H	1.997	1.00
67_T	96_S	1.954	1.00
27_I	213_I	1.949	1.00
12_L	217_N	1.947	1.00
116_I	239_I	1.903	1.00
191_V	242_F	1.898	1.00
233_A	246_D	1.895	1.00
19_G	124_N	1.845	1.00
37_N	40_E	1.805	1.00
168_A	174_V	1.801	1.00
20_D	25_G	1.799	1.00
57_H	75_N	1.761	1.00
18_K	124_N	1.742	1.00
119_I	192_T	1.720	1.00
50_L	55_I	1.697	1.00
103_G	107_E	1.685	1.00
35_R	198_E	1.684	1.00
96_S	102_R	1.684	1.00
57_H	71_Y	1.665	1.00
229_Q	251_D	1.657	1.00
56_A	247_F	1.656	1.00
232_F	247_F	1.610	1.00
71_Y	75_N	1.534	0.99
8_C	216_V	1.530	0.99
27_I	210_Q	1.525	0.99
236_V	242_F	1.523	0.99
73_Q	78_R	1.496	0.99
16_E	156_D	1.481	0.99
57_H	77_V	1.479	0.99
44_M	50_L	1.477	0.99
130_V	150_F	1.466	0.99
73_Q	81_N	1.466	0.99
39_R	158_K	1.464	0.99
233_A	248_I	1.441	0.99
158_K	195_E	1.438	0.99
16_E	155_S	1.435	0.99
8_C	170_V	1.428	0.99
28_S	153_Y	1.420	0.99
29_T	32_Y	1.419	0.99
223_D	255_H	1.412	0.99
116_I	192_T	1.402	0.99
152_F	188_I	1.392	0.99
170_V	206_V	1.389	0.99
17_K	213_I	1.387	0.99
53_K	76_G	1.383	0.99
157_G	194_L	1.374	0.99
201_H	206_V	1.367	0.99
119_I	128_L	1.362	0.99
100_S	108_T	1.358	0.99
230_L	247_F	1.342	0.99
118_D	122_N	1.320	0.98
229_Q	250_E	1.317	0.98
102_R	108_T	1.314	0.98
115_L	118_D	1.308	0.98
163_L	199_F	1.293	0.98
191_V	236_V	1.287	0.98
114_R	118_D	1.284	0.98
115_L	188_I	1.283	0.98
113_S	117_E	1.275	0.98
57_H	244_F	1.269	0.98
230_L	249_I	1.262	0.98
24_T	263_S	1.259	0.98
186_M	249_I	1.232	0.98
52_F	249_I	1.228	0.98
138_I	144_P	1.227	0.97
44_M	249_I	1.223	0.97
113_S	240_F	1.174	0.97
96_S	108_T	1.174	0.97
131_S	135_V	1.170	0.97
234_R	237_D	1.166	0.97
83_W	262_V	1.164	0.97
33_Q	202_T	1.161	0.96
137_E	140_K	1.157	0.96
216_V	260_G	1.133	0.96
171_F	260_G	1.112	0.96
214_E	217_N	1.107	0.95
168_A	203_F	1.103	0.95
190_H	234_R	1.097	0.95
12_L	213_I	1.094	0.95
213_I	217_N	1.092	0.95
153_Y	160_S	1.089	0.95
208_I	260_G	1.087	0.95
152_F	161_C	1.078	0.95
96_S	137_E	1.074	0.95
66_D	71_Y	1.072	0.95
114_R	117_E	1.064	0.94
32_Y	170_V	1.064	0.94
162_Q	202_T	1.061	0.94
7_F	170_V	1.057	0.94
226_P	253_D	1.052	0.94
12_L	208_I	1.037	0.93
5_K	224_V	1.037	0.93
115_L	152_F	1.032	0.93
103_G	109_I	1.018	0.93
170_V	174_V	1.015	0.93
154_V	194_L	1.014	0.93
253_D	256_P	1.001	0.92
114_R	139_D	0.996	0.92
165_Q	168_A	0.991	0.92
119_I	188_I	0.980	0.91
168_A	201_H	0.972	0.91
101_W	135_V	0.971	0.91
171_F	215_Q	0.971	0.91
171_F	216_V	0.970	0.91
187_I	191_V	0.967	0.91
47_T	219_Q	0.966	0.91
164_Y	204_G	0.966	0.91
14_H	29_T	0.962	0.91
8_C	208_I	0.955	0.90
257_H	262_V	0.952	0.90
118_D	125_S	0.949	0.90
70_R	73_Q	0.948	0.90
119_I	194_L	0.945	0.90
115_L	130_V	0.939	0.90
97_Q	134_N	0.922	0.89
57_H	243_A	0.922	0.89
73_Q	84_A	0.919	0.89
102_R	107_E	0.917	0.88
190_H	233_A	0.915	0.88
20_D	24_T	0.915	0.88
160_S	198_E	0.914	0.88
39_R	197_G	0.914	0.88
215_Q	260_G	0.913	0.88
103_G	136_G	0.911	0.88
214_E	218_L	0.910	0.88
50_L	257_H	0.910	0.88
211_N	263_S	0.902	0.88
84_A	87_N	0.899	0.87
118_D	121_T	0.896	0.87
25_G	210_Q	0.895	0.87
174_V	203_F	0.894	0.87
186_M	247_F	0.894	0.87
232_F	242_F	0.891	0.87
14_H	32_Y	0.886	0.87
49_K	257_H	0.878	0.86
149_L	164_Y	0.877	0.86
218_L	257_H	0.874	0.86
35_R	200_I	0.873	0.86
238_S	242_F	0.871	0.86
104_A	136_G	0.870	0.86
71_Y	74_E	0.870	0.86
39_R	195_E	0.867	0.85
187_I	247_F	0.867	0.85
56_A	249_I	0.865	0.85
191_V	238_S	0.860	0.85
96_S	100_S	0.857	0.85
7_F	32_Y	0.857	0.85
49_K	254_P	0.848	0.84
12_L	27_I	0.846	0.84
155_S	160_S	0.845	0.84
5_K	219_Q	0.843	0.84
210_Q	263_S	0.840	0.84
56_A	183_L	0.835	0.83
9_R	217_N	0.832	0.83
101_W	109_I	0.830	0.83
6_D	9_R	0.828	0.83
233_A	237_D	0.826	0.83
97_Q	141_M	0.825	0.83
92_P	96_S	0.824	0.82
8_C	260_G	0.822	0.82
18_K	28_S	0.818	0.82
182_A	199_F	0.817	0.82
151_Q	204_G	0.808	0.81
210_Q	213_I	0.806	0.81
237_D	242_F	0.806	0.81
73_Q	87_N	0.806	0.81
157_G	195_E	0.804	0.81
102_R	137_E	0.801	0.81
187_I	242_F	0.801	0.81
73_Q	85_D	0.797	0.80
44_M	179_A	0.792	0.80
131_S	148_C	0.787	0.79
73_Q	76_G	0.780	0.79
54_S	57_H	0.780	0.79
233_A	236_V	0.779	0.79
103_G	108_T	0.778	0.79
236_V	243_A	0.776	0.79
38_L	185_T	0.776	0.79
163_L	201_H	0.773	0.78
64_K	243_A	0.772	0.78
148_C	164_Y	0.766	0.78
162_Q	204_G	0.748	0.76
124_N	157_G	0.745	0.76
59_L	180_S	0.738	0.75
135_V	141_M	0.735	0.75
52_F	230_L	0.735	0.75
121_T	128_L	0.734	0.75
104_A	107_E	0.732	0.74
61_W	72_L	0.732	0.74
233_A	242_F	0.730	0.74
62_F	180_S	0.729	0.74
156_D	194_L	0.727	0.74
104_A	108_T	0.725	0.74
26_T	126_R	0.721	0.73
90_L	93_V	0.720	0.73
51_H	78_R	0.717	0.73
181_Y	199_F	0.716	0.73
231_R	234_R	0.714	0.73
188_I	192_T	0.713	0.72
148_C	163_L	0.712	0.72
56_A	244_F	0.711	0.72
112_I	130_V	0.707	0.72
45_L	254_P	0.706	0.72
56_A	230_L	0.705	0.72
3_Q	6_D	0.703	0.71
164_Y	202_T	0.702	0.71
196_P	230_L	0.702	0.71
193_G	235_K	0.699	0.71
225_R	256_P	0.697	0.71
141_M	145_P	0.695	0.70
6_D	10_H	0.694	0.70
150_F	181_Y	0.694	0.70
20_D	210_Q	0.693	0.70
137_E	141_M	0.693	0.70
156_D	195_E	0.692	0.70
211_N	261_A	0.684	0.69
158_K	197_G	0.682	0.69
51_H	76_G	0.681	0.69
136_G	139_D	0.680	0.69
144_P	148_C	0.678	0.69
223_D	226_P	0.675	0.68
101_W	136_G	0.674	0.68
60_L	247_F	0.669	0.68
128_L	192_T	0.668	0.67
9_R	221_E	0.667	0.67
41_G	227_L	0.666	0.67
234_R	242_F	0.662	0.67
174_V	199_F	0.662	0.67
187_I	236_V	0.660	0.67
69_V	84_A	0.659	0.66
98_W	132_A	0.658	0.66
28_S	205_D	0.657	0.66
69_V	75_N	0.655	0.66
187_I	190_H	0.654	0.66
129_I	133_W	0.653	0.66
27_I	217_N	0.653	0.66
7_F	34_M	0.652	0.66
225_R	251_D	0.649	0.65
18_K	153_Y	0.647	0.65
45_L	50_L	0.646	0.65
174_V	201_H	0.641	0.64
32_Y	206_V	0.641	0.64
77_V	244_F	0.640	0.64
135_V	138_I	0.640	0.64
75_N	243_A	0.636	0.64
233_A	245_E	0.635	0.64
97_Q	137_E	0.634	0.63
195_E	198_E	0.632	0.63
57_H	64_K	0.632	0.63
208_I	213_I	0.631	0.63
5_K	220_L	0.630	0.63
165_Q	174_V	0.628	0.63
78_R	261_A	0.628	0.63
112_I	188_I	0.627	0.63
53_K	57_H	0.626	0.62
120_K	192_T	0.624	0.62
19_G	27_I	0.623	0.62
190_H	236_V	0.622	0.62
190_H	242_F	0.621	0.62
5_K	45_L	0.621	0.62
138_I	141_M	0.619	0.62
5_K	227_L	0.619	0.62
64_K	71_Y	0.618	0.61
165_Q	201_H	0.618	0.61
37_N	198_E	0.618	0.61
33_Q	200_I	0.618	0.61
104_A	137_E	0.617	0.61
168_A	206_V	0.617	0.61
254_P	257_H	0.604	0.60
85_D	89_E	0.603	0.60
92_P	97_Q	0.602	0.59
69_V	83_W	0.602	0.59
183_L	230_L	0.601	0.59
50_L	254_P	0.600	0.59
5_K	9_R	0.600	0.59
171_F	212_H	0.600	0.59
235_K	242_F	0.596	0.59
37_N	41_G	0.596	0.59
193_G	237_D	0.594	0.58
75_N	244_F	0.594	0.58
51_H	244_F	0.594	0.58
235_K	246_D	0.593	0.58
54_S	77_V	0.592	0.58
234_R	247_F	0.591	0.58
33_Q	162_Q	0.591	0.58
134_N	141_M	0.591	0.58
163_L	168_A	0.590	0.58
56_A	60_L	0.590	0.58
7_F	36_F	0.589	0.58
114_R	138_I	0.587	0.58
251_D	254_P	0.585	0.57
69_V	85_D	0.584	0.57
39_R	196_P	0.583	0.57
9_R	12_L	0.580	0.57
234_R	248_I	0.579	0.57
109_I	136_G	0.579	0.57
13_E	217_N	0.576	0.56
185_T	192_T	0.576	0.56
127_R	143_L	0.573	0.56
217_N	221_E	0.572	0.56
100_S	105_D	0.572	0.56
34_M	203_F	0.571	0.55
178_I	181_Y	0.571	0.55
69_V	93_V	0.571	0.55
172_L	219_Q	0.567	0.55
78_R	263_S	0.567	0.55
187_I	232_F	0.566	0.55
155_S	158_K	0.566	0.55
102_R	136_G	0.565	0.55
82_E	262_V	0.561	0.54
69_V	81_N	0.558	0.54
32_Y	36_F	0.558	0.54
112_I	239_I	0.558	0.54
191_V	234_R	0.557	0.54
42_F	179_A	0.555	0.53
41_G	186_M	0.553	0.53
190_H	235_K	0.552	0.53
158_K	198_E	0.551	0.53
79_I	176_F	0.550	0.53
108_T	136_G	0.548	0.52
36_F	178_I	0.548	0.52
132_A	141_M	0.547	0.52
18_K	160_S	0.547	0.52
125_S	128_L	0.546	0.52
234_R	246_D	0.546	0.52
51_H	75_N	0.545	0.52
73_Q	86_E	0.545	0.52
122_N	125_S	0.541	0.52
115_L	150_F	0.541	0.52
27_I	208_I	0.540	0.51
160_S	197_G	0.538	0.51
150_F	161_C	0.537	0.51
189_A	194_L	0.533	0.51
185_T	188_I	0.531	0.50
96_S	104_A	0.531	0.50
13_E	16_E	0.530	0.50
91_G	97_Q	0.529	0.50
20_D	26_T	0.525	0.49
27_I	216_V	0.523	0.49
237_D	241_N	0.523	0.49
66_D	89_E	0.522	0.49
3_Q	227_L	0.521	0.49
166_R	169_D	0.519	0.49
160_S	200_I	0.517	0.48
10_H	13_E	0.517	0.48
18_K	155_S	0.516	0.48
51_H	57_H	0.516	0.48
38_L	182_A	0.516	0.48
54_S	73_Q	0.514	0.48
22_T	26_T	0.513	0.48
122_N	144_P	0.512	0.48
109_I	114_R	0.512	0.48
231_R	243_A	0.512	0.48
52_F	186_M	0.510	0.48
92_P	140_K	0.510	0.48
4_Y	8_C	0.510	0.48
13_E	223_D	0.507	0.47
54_S	76_G	0.506	0.47
45_L	144_P	0.504	0.47
48_K	176_F	0.504	0.47
124_N	156_D	0.503	0.47
67_T	102_R	0.501	0.46
92_P	141_M	0.500	0.46
8_C	171_F	0.500	0.46

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3v8hA	2	0.9659	100	-0.032	Contact Map
3uwlA	2	1	100	-0.031	Contact Map
3nrrA	2	1	100	-0.028	Contact Map
1hw4A	2	0.9508	100	-0.025	Contact Map
4iqbA	2	0.9848	100	-0.024	Contact Map
3hj3A	2	1	100	-0.024	Contact Map
4g9uA	2	0.9886	100	-0.024	Contact Map
4eilA	3	1	100	-0.022	Contact Map
3irmA	4	1	100	-0.02	Contact Map
3ix6A	2	0.9356	100	-0.02	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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