GREMLIN Database
DPO3X - DNA polymerase III subunit gamma/tau
UniProt: P09122 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 563 (511)
Sequences: 3707 (2809)
Seq/√Len: 124.2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
260_N263_D5.8611.00
188_N200_E5.6901.00
197_Q231_I5.1551.00
189_K193_A4.8881.00
99_N132_S4.1661.00
178_I214_M4.1011.00
75_E80_K3.8221.00
99_N134_G3.6881.00
62_V151_I3.5791.00
264_A354_V3.4621.00
33_L70_D3.3771.00
191_V198_V3.3451.00
188_N192_D3.2591.00
74_N83_T3.2531.00
66_H75_E3.0941.00
183_I214_M3.0721.00
199_E233_K2.9531.00
60_K83_T2.9521.00
377_K382_E2.9251.00
502_E508_R2.8871.00
65_E77_A2.8521.00
335_K339_E2.8441.00
336_S353_A2.7871.00
101_V134_G2.7791.00
255_S263_D2.7071.00
253_A289_F2.6841.00
18_V25_T2.6661.00
81_G117_A2.6481.00
186_R214_M2.6481.00
296_K323_A2.6271.00
16_E71_E2.6041.00
187_M217_A2.5451.00
257_H321_I2.5191.00
268_L354_V2.4831.00
13_Q83_T2.4801.00
22_E182_A2.4661.00
87_I118_V2.4101.00
18_V54_A2.4021.00
101_V132_S2.3081.00
377_K381_L2.2961.00
14_R17_D2.2641.00
16_E29_Q2.2551.00
233_K236_D2.2311.00
186_R189_K2.2231.00
271_L281_L2.2021.00
100_G103_E2.1961.00
82_I90_V2.1611.00
312_E316_E2.1381.00
329_M357_I2.1161.00
73_C76_C2.0891.00
251_K270_E2.0681.00
210_A217_A2.0581.00
316_E320_Q2.0151.00
268_L350_F1.9991.00
234_V238_L1.9961.00
72_P76_C1.9941.00
371_V374_L1.9921.00
307_K311_D1.9841.00
78_A118_V1.9821.00
120_Y151_I1.9641.00
201_G234_V1.9611.00
188_N203_L1.9491.00
192_D198_V1.9461.00
199_E202_S1.9441.00
374_L381_L1.9211.00
254_K320_Q1.9201.00
64_C76_C1.9141.00
199_E231_I1.8881.00
256_L357_I1.8711.00
64_C73_C1.8701.00
370_E375_M1.8651.00
196_L225_I1.8591.00
255_S267_T1.8371.00
472_A512_I1.8201.00
254_K313_T1.8071.00
269_N273_Q1.8021.00
370_E374_L1.7811.00
9_V194_E1.7741.00
190_I218_L1.7561.00
466_V476_K1.7511.00
179_T182_A1.7481.00
494_R498_E1.7371.00
456_H460_L1.7311.00
252_L281_L1.7281.00
19_V214_M1.7191.00
474_V514_V1.7181.00
254_K316_E1.6961.00
80_K84_N1.6721.00
498_E510_D1.6681.00
440_S443_K1.6521.00
65_E78_A1.6521.00
250_G288_Y1.6511.00
252_L264_A1.6391.00
99_N103_E1.6391.00
254_K317_L1.5971.00
378_I381_L1.5861.00
374_L377_K1.5841.00
288_Y317_L1.5761.00
93_I108_R1.5721.00
184_V204_E1.5671.00
198_V203_L1.5661.00
308_V311_D1.5561.00
18_V57_I1.5511.00
181_Q185_G1.5491.00
81_G87_I1.5471.00
381_L384_E1.5311.00
177_R211_D1.5281.00
44_S174_D1.5201.00
484_K487_A1.5091.00
498_E508_R1.4961.00
259_K325_A1.4961.00
101_V138_A1.4901.00
374_L378_I1.4901.00
66_H69_V1.4901.00
484_K488_E1.4811.00
93_I103_E1.4801.00
467_A474_V1.4731.00
289_F326_L1.4661.00
289_F333_L1.4611.00
267_T270_E1.4411.00
261_V358_C1.4271.00
312_E315_R1.4261.00
469_G472_A1.4251.00
99_N125_I1.4231.00
67_A70_D1.4141.00
184_V203_L1.3931.00
258_D320_Q1.3931.00
381_L388_L1.3791.00
494_R511_L1.3691.00
77_A81_G1.3691.00
33_L69_V1.3641.00
183_I207_A1.3631.00
495_T499_Q1.3511.00
333_L357_I1.3471.00
95_A154_L1.3411.00
100_G134_G1.3401.00
292_M326_L1.3361.00
191_V221_L1.3361.00
322_P325_A1.3301.00
483_C487_A1.3301.00
381_L385_V1.3101.00
10_F193_A1.3081.00
77_A80_K1.3041.00
104_I135_A1.2981.00
384_E389_K1.2961.00
225_I232_L1.2961.00
210_A213_G1.2941.00
253_A288_Y1.2871.00
286_I333_L1.2841.00
472_A510_D1.2821.00
434_L465_P1.2801.00
184_V188_N1.2771.00
368_L372_D1.2681.00
501_L509_M1.2671.00
103_E134_G1.2651.00
37_F151_I1.2601.00
451_Q503_S1.2561.00
19_V186_R1.2511.00
254_K258_D1.2481.00
372_D377_K1.2441.00
474_V512_I1.2370.99
306_E311_D1.2130.99
7_Y49_T1.2120.99
347_R351_E1.2050.99
447_H504_M1.2040.99
78_A87_I1.2030.99
370_E373_M1.1930.99
101_V104_I1.1890.99
98_N104_I1.1890.99
463_S477_F1.1880.99
315_R319_E1.1850.99
103_E132_S1.1830.99
100_G111_V1.1810.99
372_D375_M1.1740.99
235_E239_L1.1730.99
379_Q383_Q1.1700.99
269_N347_R1.1680.99
384_E388_L1.1640.99
321_I326_L1.1610.99
98_N135_A1.1590.99
272_L278_P1.1520.99
111_V142_T1.1460.99
111_V123_Y1.1440.99
98_N103_E1.1400.99
192_D197_Q1.1340.99
99_N108_R1.1330.99
46_P213_G1.1320.99
463_S475_L1.1290.99
436_L440_S1.1190.99
106_D139_L1.1150.99
91_I121_K1.1130.99
477_F486_V1.1130.99
456_H459_L1.1120.99
189_K192_D1.1110.99
420_G426_L1.1110.99
499_Q503_S1.1090.99
202_S237_A1.1050.99
64_C72_P1.0920.99
258_D263_D1.0910.99
90_V124_I1.0900.99
325_A329_M1.0860.99
371_V375_M1.0770.99
185_G188_N1.0770.99
439_N442_G1.0750.99
316_E319_E1.0740.99
64_C79_C1.0720.99
249_I288_Y1.0700.98
444_L504_M1.0660.98
44_S172_R1.0620.98
22_E185_G1.0590.98
388_L391_T1.0540.98
498_E502_E1.0530.98
81_G84_N1.0500.98
332_I356_K1.0470.98
372_D376_K1.0430.98
278_P350_F1.0420.98
376_K379_Q1.0390.98
438_R464_E1.0390.98
368_L371_V1.0360.98
455_S460_L1.0340.98
106_D110_K1.0340.98
368_L373_M1.0320.98
382_E385_V1.0290.98
104_I108_R1.0270.98
500_I504_M1.0230.98
388_L394_K1.0210.98
412_K416_K1.0180.98
417_A421_R1.0160.98
6_L218_L1.0160.98
99_N105_R1.0130.98
191_V203_L1.0080.98
186_R218_L1.0080.98
367_D375_M1.0070.98
251_K313_T1.0060.98
447_H503_S1.0060.98
76_C79_C1.0020.98
411_G415_Y0.9990.98
290_R351_E0.9880.97
251_K267_T0.9840.97
77_A117_A0.9790.97
287_F291_D0.9790.97
416_K422_I0.9780.97
369_P375_M0.9780.97
460_L497_L0.9760.97
10_F194_E0.9710.97
109_D113_F0.9700.97
378_I382_E0.9670.97
49_T56_K0.9660.97
263_D267_T0.9640.97
128_V160_H0.9640.97
214_M217_A0.9620.97
454_V460_L0.9560.97
505_L509_M0.9540.97
17_D189_K0.9530.97
444_L501_L0.9530.97
328_E360_T0.9510.97
375_M379_Q0.9500.97
437_L473_F0.9480.97
436_L439_N0.9470.97
100_G104_I0.9470.97
31_A46_P0.9450.97
22_E26_K0.9450.97
377_K380_Q0.9440.97
200_E204_E0.9440.97
7_Y56_K0.9440.97
91_I123_Y0.9400.97
183_I187_M0.9390.97
296_K319_E0.9390.97
46_P113_F0.9370.97
375_M382_E0.9360.96
495_T498_E0.9320.96
266_E270_E0.9300.96
188_N198_V0.9220.96
456_H486_V0.9220.96
178_I182_A0.9150.96
313_T316_E0.9150.96
262_S300_G0.9140.96
385_V389_K0.9130.96
93_I100_G0.9120.96
368_L376_K0.9090.96
369_P372_D0.9060.96
489_D495_T0.9050.96
13_Q17_D0.9040.96
33_L71_E0.8990.96
58_F153_I0.8970.96
338_Q342_W0.8950.95
114_A149_H0.8940.95
29_Q70_D0.8940.95
17_D186_R0.8920.95
205_I234_V0.8910.95
250_G313_T0.8910.95
187_M203_L0.8870.95
499_Q502_E0.8850.95
439_N443_K0.8830.95
422_I430_T0.8810.95
108_R134_G0.8770.95
97_S130_M0.8750.95
471_A507_K0.8740.95
422_I425_I0.8740.95
468_A473_F0.8730.95
252_L354_V0.8700.95
131_L135_A0.8700.95
412_K415_Y0.8690.95
412_K418_P0.8670.95
286_I330_I0.8640.95
102_D134_G0.8630.94
190_I193_A0.8610.94
305_L311_D0.8600.94
331_D335_K0.8570.94
43_F175_F0.8570.94
44_S159_P0.8550.94
397_A402_K0.8550.94
289_F329_M0.8510.94
54_A175_F0.8500.94
371_V381_L0.8490.94
29_Q71_E0.8470.94
98_N111_V0.8460.94
292_M317_L0.8450.94
122_V151_I0.8440.94
386_E389_K0.8420.94
253_A256_L0.8420.94
198_V232_L0.8420.94
111_V150_C0.8420.94
251_K263_D0.8400.94
185_G189_K0.8390.94
440_S444_L0.8360.93
68_P120_Y0.8330.93
34_Q37_F0.8320.93
263_D266_E0.8290.93
399_S403_E0.8290.93
378_I384_E0.8280.93
292_M314_F0.8260.93
457_A460_L0.8230.93
471_A510_D0.8220.93
335_K338_Q0.8200.93
67_A119_T0.8200.93
464_E476_K0.8180.93
380_Q383_Q0.8160.93
264_A355_V0.8140.93
416_K421_R0.8140.93
411_G416_K0.8140.93
43_F58_F0.8110.92
426_L429_A0.8100.92
38_S171_Q0.8090.92
398_E404_A0.8080.92
373_M386_E0.8070.92
497_L513_G0.8070.92
454_V457_A0.8060.92
380_Q395_A0.8060.92
102_D133_I0.8010.92
370_E390_T0.8010.92
57_I83_T0.8010.92
399_S404_A0.8000.92
487_A494_R0.8000.92
411_G417_A0.7990.92
159_P162_I0.7980.92
379_Q382_E0.7970.92
249_I285_M0.7940.92
417_A423_H0.7940.92
25_T54_A0.7910.91
478_K516_E0.7910.91
385_V388_L0.7890.91
183_I217_A0.7880.91
434_L437_L0.7880.91
388_L392_G0.7870.91
93_I104_I0.7860.91
26_K236_D0.7850.91
124_I135_A0.7850.91
142_T150_C0.7830.91
415_Y419_V0.7830.91
413_S417_A0.7830.91
410_G414_N0.7820.91
500_I503_S0.7800.91
305_L308_V0.7790.91
423_H426_L0.7760.91
167_I172_R0.7740.91
108_R112_K0.7700.90
295_Y314_F0.7680.90
159_P174_D0.7660.90
443_K446_A0.7660.90
99_N133_I0.7650.90
93_I110_K0.7640.90
128_V136_F0.7620.90
421_R424_E0.7620.90
181_Q204_E0.7600.90
42_L159_P0.7580.90
270_E273_Q0.7580.90
373_M380_Q0.7580.90
224_A240_I0.7560.90
376_K380_Q0.7560.90
191_V225_I0.7550.89
470_S507_K0.7540.89
49_T172_R0.7540.89
377_K388_L0.7530.89
332_I357_I0.7510.89
375_M380_Q0.7510.89
400_P403_E0.7510.89
414_N420_G0.7500.89
118_V210_A0.7500.89
433_D436_L0.7450.89
283_E337_H0.7450.89
399_S410_G0.7450.89
383_Q386_E0.7450.89
8_R39_H0.7420.89
419_V423_H0.7400.89
448_L460_L0.7400.89
426_L430_T0.7390.88
396_A405_P0.7390.88
99_N112_K0.7380.88
399_S402_K0.7380.88
37_F120_Y0.7350.88
480_E484_K0.7340.88
374_L380_Q0.7320.88
445_L477_F0.7300.88
118_V128_V0.7270.88
368_L381_L0.7270.88
30_N33_L0.7240.87
411_G421_R0.7230.87
306_E309_K0.7230.87
368_L388_L0.7190.87
422_I428_E0.7190.87
261_V355_V0.7180.87
256_L329_M0.7180.87
114_A148_E0.7180.87
368_L382_E0.7170.87
410_G416_K0.7170.87
468_A509_M0.7150.87
392_G395_A0.7150.87
268_L347_R0.7150.87
49_T276_K0.7140.87
485_M488_E0.7130.87
104_I131_L0.7120.87
64_C74_N0.7060.86
290_R293_L0.7060.86
108_R163_P0.7050.86
465_P475_L0.7040.86
434_L438_R0.7040.86
501_L505_L0.7030.86
405_P413_S0.7010.86
369_P373_M0.7010.86
387_R405_P0.7000.86
370_E380_Q0.7000.86
435_D438_R0.6990.86
28_L58_F0.6980.85
396_A402_K0.6960.85
376_K382_E0.6960.85
213_G223_Q0.6940.85
367_D377_K0.6940.85
424_E427_K0.6940.85
521_K524_E0.6920.85
37_F62_V0.6910.85
465_P473_F0.6910.85
447_H451_Q0.6900.85
328_E332_I0.6890.85
373_M378_I0.6850.84
217_A221_L0.6840.84
219_S222_D0.6830.84
27_T171_Q0.6830.84
199_E234_V0.6820.84
370_E376_K0.6820.84
373_M377_K0.6810.84
389_K392_G0.6810.84
425_I430_T0.6810.84
372_D378_I0.6790.84
441_W448_L0.6790.84
159_P172_R0.6770.84
385_V391_T0.6770.84
437_L465_P0.6750.84
416_K420_G0.6750.84
259_K361_S0.6750.84
128_V162_I0.6740.83
61_A69_V0.6730.83
199_E235_E0.6730.83
367_D372_D0.6730.83
409_K412_K0.6720.83
394_K402_K0.6720.83
396_A404_A0.6710.83
466_V474_V0.6690.83
19_V185_G0.6680.83
175_F290_R0.6680.83
483_C488_E0.6680.83
256_L354_V0.6680.83
389_K401_K0.6660.83
54_A232_L0.6660.83
27_T174_D0.6650.83
415_Y421_R0.6650.83
421_R425_I0.6620.82
409_K413_S0.6620.82
192_D195_Q0.6610.82
384_E396_A0.6610.82
299_P302_E0.6610.82
367_D370_E0.6600.82
369_P382_E0.6590.82
103_E158_E0.6590.82
393_I397_A0.6570.82
368_L374_L0.6570.82
56_K186_R0.6560.82
122_V154_L0.6550.82
410_G415_Y0.6550.82
285_M333_L0.6530.81
375_M390_T0.6520.81
319_E376_K0.6510.81
444_L448_L0.6510.81
14_R71_E0.6510.81
381_L387_R0.6500.81
375_M381_L0.6500.81
373_M391_T0.6500.81
448_L496_N0.6500.81
4_Q41_Y0.6490.81
367_D371_V0.6480.81
100_G132_S0.6470.81
5_A8_R0.6470.81
7_Y95_A0.6470.81
104_I134_G0.6450.81
367_D380_Q0.6450.81
424_E428_E0.6430.80
69_V119_T0.6420.80
5_A38_S0.6400.80
280_K284_D0.6390.80
416_K419_V0.6380.80
293_L297_T0.6380.80
27_T38_S0.6360.80
187_M218_L0.6360.80
443_K504_M0.6360.80
379_Q389_K0.6350.80
256_L475_L0.6350.80
73_C79_C0.6330.79
389_K395_A0.6330.79
19_V189_K0.6330.79
422_I426_L0.6320.79
423_H427_K0.6320.79
373_M376_K0.6310.79
19_V178_I0.6300.79
247_L313_T0.6290.79
202_S233_K0.6280.79
293_L326_L0.6260.79
175_F291_D0.6220.78
387_R390_T0.6190.78
333_L353_A0.6190.78
100_G108_R0.6180.78
99_N107_I0.6180.78
410_G418_P0.6150.77
309_K312_E0.6140.77
276_K281_L0.6140.77
496_N499_Q0.6140.77
65_E119_T0.6120.77
374_L382_E0.6110.77
473_F501_L0.6110.77
392_G398_E0.6110.77
60_K85_G0.6100.77
18_V23_H0.6100.77
62_V69_V0.6090.77
98_N108_R0.6090.77
412_K419_V0.6060.76
457_A461_N0.6040.76
485_M489_D0.6040.76
402_K405_P0.6040.76
209_A213_G0.6040.76
473_F511_L0.6020.76
295_Y315_R0.6020.76
197_Q258_D0.6020.76
146_P157_T0.6000.76
385_V392_G0.5990.76
381_L386_E0.5990.76
252_L267_T0.5990.76
55_A124_I0.5980.76
135_A142_T0.5980.76
373_M382_E0.5980.76
89_D165_T0.5970.75
367_D376_K0.5970.75
406_R410_G0.5970.75
49_T221_L0.5970.75
164_L213_G0.5960.75
36_K213_G0.5960.75
248_Y267_T0.5960.75
382_E389_K0.5950.75
98_N102_D0.5920.75
426_L431_R0.5920.75
368_L383_Q0.5910.75
400_P404_A0.5910.75
16_E57_I0.5900.75
367_D378_I0.5900.75
100_G135_A0.5900.75
12_P186_R0.5870.74
253_A317_L0.5870.74
327_Y331_D0.5860.74
10_F190_I0.5850.74
291_D294_L0.5850.74
477_F513_G0.5850.74
170_C191_V0.5850.74
209_A241_T0.5840.74
186_R190_I0.5840.74
177_R277_D0.5830.74
343_T350_F0.5830.74
282_I336_S0.5830.74
95_A122_V0.5820.74
123_Y207_A0.5820.74
136_F139_L0.5810.73
391_T415_Y0.5810.73
61_A163_P0.5790.73
264_A358_C0.5780.73
393_I406_R0.5780.73
389_K393_I0.5780.73
250_G254_K0.5780.73
307_K310_V0.5770.73
293_L323_A0.5770.73
83_T90_V0.5760.73
115_P149_H0.5760.73
6_L15_F0.5740.73
449_K491_N0.5740.73
163_P213_G0.5740.73
397_A404_A0.5720.72
424_E431_R0.5720.72
451_Q454_V0.5720.72
441_W445_L0.5710.72
487_A491_N0.5710.72
266_E269_N0.5710.72
180_S184_V0.5700.72
405_P414_N0.5700.72
429_A432_P0.5700.72
420_G424_E0.5700.72
418_P421_R0.5690.72
182_A189_K0.5690.72
4_Q9_V0.5680.72
184_V207_A0.5660.71
270_E274_Q0.5660.71
367_D374_L0.5650.71
397_A400_P0.5640.71
449_K454_V0.5640.71
68_P119_T0.5630.71
90_V93_I0.5620.71
395_A400_P0.5590.71
96_A165_T0.5580.70
373_M381_L0.5580.70
404_A416_K0.5580.70
93_I98_N0.5580.70
276_K347_R0.5580.70
440_S505_L0.5570.70
387_R392_G0.5570.70
417_A425_I0.5560.70
94_D165_T0.5550.70
423_H429_A0.5550.70
393_I423_H0.5540.70
224_A232_L0.5540.70
197_Q230_D0.5540.70
198_V202_S0.5540.70
480_E483_C0.5540.70
390_T424_E0.5530.70
415_Y426_L0.5530.70
413_S424_E0.5520.70
422_I431_R0.5520.70
151_I164_L0.5520.70
379_Q386_E0.5510.69
436_L443_K0.5510.69
265_L294_L0.5510.69
386_E395_A0.5500.69
202_S224_A0.5490.69
371_V401_K0.5480.69
395_A401_K0.5470.69
427_K431_R0.5460.69
82_I85_G0.5460.69
502_E514_V0.5450.69
124_I153_I0.5450.69
405_P417_A0.5440.68
6_L225_I0.5430.68
511_L514_V0.5430.68
399_S411_G0.5430.68
516_E519_W0.5420.68
390_T398_E0.5410.68
42_L162_I0.5400.68
384_E387_R0.5400.68
43_F107_I0.5390.68
17_D153_I0.5390.68
378_I386_E0.5390.68
327_Y355_V0.5390.68
375_M378_I0.5390.68
208_S287_F0.5380.68
7_Y39_H0.5380.68
101_V133_I0.5380.68
405_P409_K0.5370.68
378_I383_Q0.5370.68
53_S190_I0.5360.67
378_I388_L0.5320.67
419_V428_E0.5320.67
73_C80_K0.5310.67
374_L379_Q0.5300.67
391_T395_A0.5290.66
26_K30_N0.5280.66
446_A450_Q0.5280.66
418_P424_E0.5280.66
397_A406_R0.5280.66
462_D477_F0.5280.66
93_I123_Y0.5270.66
157_T165_T0.5270.66
476_K514_V0.5270.66
377_K385_V0.5270.66
40_A130_M0.5260.66
387_R402_K0.5260.66
390_T404_A0.5260.66
387_R404_A0.5250.66
375_M388_L0.5250.66
170_C237_A0.5240.66
29_Q33_L0.5230.65
378_I399_S0.5230.65
366_A378_I0.5230.65
5_A218_L0.5230.65
413_S419_V0.5220.65
391_T406_R0.5210.65
160_H170_C0.5200.65
71_E74_N0.5200.65
373_M384_E0.5190.65
187_M221_L0.5180.65
437_L441_W0.5180.65
371_V376_K0.5180.65
184_V200_E0.5170.65
5_A222_D0.5170.65
73_C78_A0.5160.64
125_I136_F0.5160.64
238_L243_A0.5160.64
3_Y8_R0.5160.64
209_A224_A0.5160.64
109_D209_A0.5150.64
248_Y281_L0.5150.64
441_W475_L0.5150.64
187_M190_I0.5150.64
140_L156_T0.5150.64
60_K82_I0.5150.64
522_I525_E0.5140.64
390_T394_K0.5130.64
88_S116_S0.5130.64
398_E422_I0.5130.64
57_I222_D0.5130.64
260_N266_E0.5120.64
459_L462_D0.5120.64
154_L176_K0.5110.64
375_M392_G0.5110.64
38_S213_G0.5090.63
114_A220_L0.5090.63
7_Y38_S0.5090.63
136_F163_P0.5090.63
27_T173_F0.5080.63
129_H165_T0.5080.63
43_F164_L0.5070.63
139_L351_E0.5070.63
495_T502_E0.5060.63
178_I186_R0.5060.63
153_I175_F0.5050.63
30_N123_Y0.5050.63
183_I186_R0.5040.63
65_E69_V0.5040.63
211_D292_M0.5040.63
455_S458_A0.5040.63
256_L289_F0.5030.63
367_D381_L0.5030.63
371_V377_K0.5030.63
380_Q388_L0.5030.63
405_P425_I0.5030.63
105_R139_L0.5020.62
445_L500_I0.5020.62
196_L358_C0.5010.62
128_V131_L0.5010.62
483_C515_P0.5010.62
376_K398_E0.5000.62
77_A118_V0.5000.62
414_N418_P0.5000.62
370_E388_L0.5000.62
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
1jr3A 3 0.6501 100 0.6 Contact Map
1sxjC 1 0.5577 100 0.652 Contact Map
1sxjD 1 0.5524 100 0.657 Contact Map
1iqpA 5 0.5595 100 0.661 Contact Map
2chqA 3 0.5506 100 0.665 Contact Map
1sxjE 1 0.5435 100 0.669 Contact Map
1a5tA 2 0.5666 100 0.678 Contact Map
1jr3D 1 0.5702 100 0.695 Contact Map
3zh9B 1 0.5595 100 0.703 Contact Map
3u61B 3 0.54 100 0.705 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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