GREMLIN Database
YWJG - Uncharacterized protein YwjG
UniProt: P06629 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 173 (170)
Sequences: 143 (108)
Seq/√Len: 8.3

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
85_F111_V6.3321.00
4_I138_V3.5650.95
51_G151_L3.1200.90
5_F147_G3.0420.89
34_A81_R2.9800.88
10_T152_M2.5080.77
34_A37_S2.4870.76
4_I153_T2.4300.75
62_P66_V2.2920.70
37_S81_R2.2850.70
6_T156_Y2.1050.63
20_E37_S2.0850.62
136_P142_D2.0610.61
49_L111_V1.9880.59
29_R145_R1.9430.57
45_G128_H1.8400.52
42_Y76_V1.7800.50
162_S166_K1.7620.49
29_R139_P1.7360.48
113_P131_S1.7020.47
49_L85_F1.6890.46
52_V154_A1.6730.45
40_S67_K1.6280.44
5_F14_S1.6190.43
1_M42_Y1.6140.43
69_F138_V1.5770.42
19_K142_D1.5050.39
24_I85_F1.5010.39
14_S18_D1.4940.38
140_D144_T1.4840.38
9_L13_F1.4690.37
138_V163_F1.4600.37
162_S165_L1.4550.37
107_G148_F1.4540.37
36_I67_K1.4510.37
112_S128_H1.4390.36
29_R137_L1.4220.35
4_I136_P1.4210.35
108_V125_C1.4160.35
136_P144_T1.4130.35
86_C99_K1.4100.35
24_I76_V1.3910.34
46_A97_L1.3870.34
47_N93_E1.3740.34
50_Q157_V1.3730.34
62_P162_S1.3630.33
37_S121_I1.3600.33
90_G120_G1.3410.32
49_L59_S1.3220.32
108_V124_Y1.3140.31
56_A98_A1.3110.31
139_P145_R1.3090.31
112_S121_I1.3090.31
121_I154_A1.2980.31
25_E139_P1.2780.30
141_E161_L1.2520.29
43_L89_T1.2500.29
58_E74_E1.2470.29
47_N103_E1.2210.28
29_R143_G1.2200.28
4_I10_T1.2160.28
5_F164_T1.2150.28
49_L154_A1.2110.28
91_T94_E1.2000.27
24_I114_A1.1980.27
74_E123_Q1.1970.27
12_I138_V1.1600.26
49_L141_E1.1560.26
2_L6_T1.1540.26
2_L160_A1.1480.26
13_F167_E1.1290.25
13_F152_M1.1190.25
59_S87_S1.1160.25
24_I111_V1.1060.24
26_D147_G1.1050.24
25_E29_R1.1010.24
10_T61_E1.1010.24
5_F163_F1.1010.24
94_E97_L1.0880.24
37_S167_E1.0870.24
110_C124_Y1.0870.24
6_T51_G1.0800.24
62_P138_V1.0790.24
109_V163_F1.0770.24
16_I131_S1.0740.24
3_K167_E1.0640.23
59_S159_H1.0540.23
121_I129_I1.0400.22
127_V134_K1.0340.22
110_C125_C1.0340.22
52_V101_L1.0310.22
16_I96_E1.0180.22
6_T36_I1.0090.22
57_T68_A0.9800.21
40_S76_V0.9770.21
111_V119_A0.9580.20
45_G91_T0.9580.20
83_L111_V0.9510.20
54_Y151_L0.9410.20
57_T100_E0.9330.20
36_I148_F0.9280.19
12_I169_L0.9240.19
18_D67_K0.9220.19
58_E123_Q0.9190.19
43_L166_K0.9120.19
42_Y85_F0.9060.19
26_D145_R0.9050.19
26_D55_E0.9040.19
110_C121_I0.8910.18
27_G159_H0.8890.18
51_G107_G0.8740.18
92_A170_Q0.8740.18
16_I100_E0.8740.18
82_V168_I0.8650.18
13_F61_E0.8640.18
152_M159_H0.8510.17
83_L161_L0.8480.17
49_L52_V0.8440.17
3_K17_Q0.8430.17
151_L159_H0.8430.17
94_E110_C0.8410.17
73_A108_V0.8330.17
146_Y163_F0.8320.17
11_G48_E0.8270.17
23_A90_G0.8240.17
150_S171_E0.8190.17
5_F26_D0.8180.17
143_G155_L0.8070.16
35_V65_S0.8020.16
55_E130_D0.7980.16
98_A101_L0.7960.16
93_E96_E0.7960.16
77_T131_S0.7930.16
146_Y167_E0.7910.16
55_E147_G0.7900.16
5_F55_E0.7870.16
74_E167_E0.7840.16
87_S125_C0.7800.16
32_A127_V0.7790.16
51_G54_Y0.7740.16
27_G161_L0.7740.16
14_S160_A0.7700.16
67_K168_I0.7670.16
63_F86_C0.7640.15
52_V59_S0.7620.15
71_E120_G0.7610.15
2_L61_E0.7610.15
35_V116_K0.7560.15
59_S150_S0.7550.15
117_D171_E0.7550.15
39_H144_T0.7540.15
94_E112_S0.7500.15
16_I161_L0.7410.15
45_G141_E0.7370.15
13_F140_D0.7350.15
45_G69_F0.7340.15
85_F151_L0.7330.15
54_Y93_E0.7290.15
4_I13_F0.7270.15
91_T110_C0.7260.15
55_E168_I0.7200.15
29_R32_A0.7180.15
126_D155_L0.6970.14
27_G127_V0.6960.14
43_L63_F0.6950.14
139_P143_G0.6950.14
161_L168_I0.6950.14
23_A169_L0.6920.14
4_I157_V0.6910.14
140_D146_Y0.6890.14
12_I136_P0.6890.14
71_E92_A0.6850.14
23_A27_G0.6850.14
71_E82_V0.6810.14
1_M9_L0.6660.13
49_L90_G0.6630.13
123_Q153_T0.6560.13
38_G93_E0.6530.13
78_E110_C0.6460.13
52_V68_A0.6460.13
76_V89_T0.6420.13
131_S148_F0.6390.13
12_I113_P0.6380.13
98_A108_V0.6370.13
78_E115_A0.6360.13
28_A166_K0.6350.13
22_D108_V0.6340.13
72_N96_E0.6310.13
63_F159_H0.6290.13
108_V153_T0.6270.13
14_S144_T0.6230.13
4_I19_K0.6210.13
128_H147_G0.6200.13
49_L87_S0.6190.13
16_I41_I0.6180.13
125_C138_V0.6180.13
56_A154_A0.6170.13
50_Q131_S0.6160.13
60_K116_K0.6140.12
31_L81_R0.6060.12
26_D126_D0.6060.12
23_A102_Y0.6030.12
63_F92_A0.6020.12
52_V170_Q0.6010.12
42_Y120_G0.5960.12
71_E117_D0.5900.12
130_D133_L0.5890.12
2_L48_E0.5870.12
50_Q61_E0.5850.12
10_T15_R0.5840.12
138_V157_V0.5830.12
20_E51_G0.5820.12
87_S148_F0.5810.12
73_A96_E0.5790.12
45_G169_L0.5790.12
65_S118_S0.5780.12
132_K138_V0.5740.12
128_H146_Y0.5740.12
18_D76_V0.5730.12
41_I129_I0.5680.12
137_L145_R0.5650.12
55_E128_H0.5610.12
47_N151_L0.5570.11
60_K106_A0.5570.11
147_G171_E0.5550.11
130_D171_E0.5480.11
55_E126_D0.5470.11
36_I124_Y0.5440.11
7_T29_R0.5410.11
127_V159_H0.5400.11
27_G164_T0.5380.11
75_E82_V0.5380.11
52_V121_I0.5370.11
54_Y71_E0.5370.11
3_K15_R0.5350.11
76_V92_A0.5320.11
121_I125_C0.5310.11
67_K169_L0.5300.11
47_N104_K0.5290.11
2_L168_I0.5270.11
56_A157_V0.5270.11
132_K163_F0.5220.11
61_E162_S0.5200.11
157_V171_E0.5200.11
42_Y93_E0.5180.11
60_K111_V0.5150.11
95_Q112_S0.5110.11
136_P162_S0.5100.11
147_G157_V0.5080.11
136_P156_Y0.5070.11
50_Q78_E0.5040.11
45_G112_S0.5030.11
99_K116_K0.5020.11
20_E118_S0.5010.11
30_L139_P0.5000.11
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3jx9A 2 0.9653 99.9 0.677 Contact Map
3cvjA 2 1 99.5 0.784 Contact Map
2i2wA 4 0.9191 98.9 0.832 Contact Map
2yvaA 4 0.8902 98.9 0.833 Contact Map
3trjA 4 0.8902 98.8 0.838 Contact Map
1m3sA 4 0.9538 98.8 0.841 Contact Map
2xblA 4 0.9249 98.8 0.842 Contact Map
2xhzA 4 0.9306 98.7 0.844 Contact Map
1x92A 4 0.9075 98.7 0.844 Contact Map
1tk9A 4 0.8902 98.7 0.845 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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