THRC - BACSU - GREMLIN Contacts

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THRC - Threonine synthase

UniProt:	P04990	Sequences: MWKGLIHQYKEFLPVTDQTPALTLHEGNTPLIHLPKLSEQLGIELHVKTEGVNPTGSFKDRGMVMAVAKAKEEGNDTIMCASTGNTSAAAAAYAARANMKCIVIIPNGKIAFGKLAQAVMYGAEIIAIDGNFDDALKIVRSICEKSPIALVNSVNPYRIEGQKTAAFEVCEQLGEAPDVLAIPVGNAGNITAYWKGFKEYHEKNGTGLPKMRGFEAEGAAAIVRNEVIENPETIATAIRIGNPASWDKAVKAAEESNGKIDEVTDDEILHAYQLIARVEGVFAEPGSCASIAGVLKQVKSGEIPKGSKVVAVLTGNGLKDPNTAVDISEIKPVTLPTDEDSILEYVKGAARV	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	352 (297)
Sequences:	23434 (12056)
Seq/√Len:	699.5

ECOLI - SDHD ILVA CYSK DPAL CYSM TDCB TRPB DCYD THRC
BACSU - THRC ILVA SDHD CYSK CYSM MCCA TRPB
HALSA - Q9HMQ7 Q9HRU4 Q9HNH6 Q9HNH0 Q9HQ70 TRPB Q9HRP3
SULSO - Q97ZL6 Q980P1 TRPB1 TRPB2 Q97ZT5 Q980F2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
94_A	101_C	4.001	1.00
44_E	308_K	3.455	1.00
138_I	141_S	3.316	1.00
33_H	44_E	3.088	1.00
267_E	296_K	2.730	1.00
274_L	278_V	2.710	1.00
169_V	310_V	2.649	1.00
179_V	212_R	2.629	1.00
112_F	116_A	2.616	1.00
77_T	102_I	2.520	1.00
107_N	129_D	2.511	1.00
69_K	73_E	2.474	1.00
100_K	124_E	2.457	1.00
28_N	171_E	2.395	1.00
141_S	145_K	2.391	1.00
217_E	264_T	2.356	1.00
69_K	157_Y	2.344	1.00
102_I	124_E	2.282	1.00
264_T	267_E	2.254	1.00
210_K	259_K	2.224	1.00
46_H	308_K	2.208	1.00
71_K	99_M	2.204	1.00
104_I	142_I	2.191	1.00
201_H	208_L	2.137	1.00
218_G	265_D	2.048	1.00
194_W	256_S	2.047	1.00
102_I	126_I	2.045	1.00
290_S	311_A	2.025	1.00
31_L	310_V	2.005	1.00
28_N	172_Q	2.003	1.00
167_F	196_G	1.947	1.00
304_P	307_S	1.946	1.00
275_I	283_A	1.944	1.00
220_A	224_R	1.940	1.00
68_A	97_A	1.932	1.00
194_W	211_M	1.916	1.00
214_F	293_G	1.847	1.00
162_Q	199_E	1.842	1.00
271_A	292_A	1.822	1.00
274_L	295_L	1.822	1.00
201_H	209_P	1.794	1.00
292_A	296_K	1.789	1.00
46_H	173_L	1.769	1.00
180_L	197_F	1.740	1.00
55_T	92_A	1.724	1.00
212_R	259_K	1.707	1.00
140_R	144_E	1.699	1.00
162_Q	195_K	1.697	1.00
33_H	46_H	1.693	1.00
251_K	255_E	1.685	1.00
184_V	213_G	1.679	1.00
180_L	193_Y	1.673	1.00
178_D	308_K	1.650	1.00
201_H	207_G	1.623	1.00
275_I	291_I	1.622	1.00
115_L	127_A	1.614	1.00
71_K	74_G	1.605	1.00
178_D	307_S	1.590	1.00
175_E	308_K	1.589	1.00
33_H	38_S	1.568	1.00
179_V	307_S	1.539	1.00
261_D	293_G	1.525	1.00
71_K	97_A	1.517	1.00
170_C	200_Y	1.516	1.00
271_A	295_L	1.514	1.00
166_A	193_Y	1.510	1.00
238_I	289_A	1.506	1.00
47_V	313_L	1.505	1.00
112_F	115_L	1.495	1.00
77_T	100_K	1.490	1.00
142_I	146_S	1.471	1.00
64_V	68_A	1.464	1.00
115_L	119_V	1.455	1.00
82_S	87_S	1.452	1.00
198_K	258_G	1.443	1.00
267_E	292_A	1.430	1.00
116_A	119_V	1.417	1.00
40_Q	274_L	1.408	1.00
273_Q	277_R	1.402	1.00
136_L	140_R	1.361	1.00
166_A	197_F	1.358	1.00
181_A	297_Q	1.356	1.00
235_A	268_I	1.347	1.00
66_A	155_N	1.347	1.00
133_D	137_K	1.333	1.00
283_A	313_L	1.332	1.00
181_A	214_F	1.323	1.00
287_S	313_L	1.302	1.00
166_A	196_G	1.294	1.00
143_C	150_L	1.288	1.00
190_I	257_N	1.287	1.00
271_A	291_I	1.285	1.00
196_G	200_Y	1.284	1.00
179_V	210_K	1.283	1.00
217_E	262_E	1.274	1.00
40_Q	278_V	1.271	1.00
270_H	274_L	1.259	1.00
65_M	163_K	1.258	1.00
191_T	249_A	1.255	1.00
220_A	262_E	1.249	1.00
190_I	213_G	1.233	1.00
132_F	135_A	1.231	1.00
155_N	158_R	1.227	1.00
261_D	296_K	1.225	1.00
250_V	254_E	1.225	1.00
126_I	138_I	1.223	1.00
67_V	78_I	1.222	1.00
223_V	260_I	1.220	1.00
263_V	292_A	1.217	1.00
193_Y	312_V	1.214	1.00
118_A	123_A	1.209	1.00
223_V	262_E	1.205	1.00
276_A	282_F	1.199	1.00
36_K	279_E	1.197	1.00
32_I	49_T	1.185	1.00
34_L	47_V	1.181	1.00
179_V	309_V	1.176	1.00
140_R	143_C	1.170	1.00
267_E	270_H	1.164	1.00
105_I	118_A	1.162	1.00
197_F	209_P	1.157	1.00
31_L	173_L	1.146	1.00
30_P	52_V	1.145	1.00
115_L	125_I	1.141	1.00
21_A	24_L	1.138	1.00
20_P	24_L	1.130	1.00
104_I	138_I	1.126	1.00
138_I	142_I	1.123	1.00
167_F	171_E	1.119	1.00
170_C	196_G	1.105	1.00
137_K	141_S	1.105	1.00
31_L	169_V	1.105	1.00
87_S	118_A	1.103	1.00
213_G	260_I	1.098	1.00
177_P	310_V	1.097	1.00
137_K	140_R	1.094	1.00
131_N	134_D	1.086	1.00
234_I	269_L	1.083	1.00
156_P	159_I	1.080	1.00
195_K	251_K	1.076	1.00
45_L	294_V	1.073	1.00
68_A	72_E	1.072	1.00
69_K	72_E	1.065	1.00
173_L	177_P	1.059	1.00
179_V	303_I	1.057	1.00
212_R	261_D	1.052	1.00
42_G	305_K	1.051	1.00
65_M	69_K	1.051	1.00
266_D	270_H	1.050	1.00
65_M	160_E	1.044	1.00
190_I	211_M	1.044	1.00
294_V	311_A	1.043	1.00
35_P	39_E	1.039	1.00
173_L	310_V	1.037	1.00
296_K	299_K	1.034	1.00
303_I	307_S	1.029	1.00
73_E	157_Y	1.028	1.00
78_I	94_A	1.027	1.00
139_V	143_C	1.026	1.00
134_D	137_K	1.025	1.00
107_N	130_G	1.020	1.00
80_C	103_V	1.014	1.00
220_A	223_V	1.013	1.00
105_I	127_A	1.013	1.00
141_S	144_E	0.998	1.00
90_A	101_C	0.995	1.00
170_C	201_H	0.994	1.00
67_V	97_A	0.987	1.00
248_K	251_K	0.984	1.00
95_A	101_C	0.981	1.00
272_Y	288_C	0.979	1.00
92_A	121_Y	0.975	1.00
79_M	148_I	0.972	1.00
21_A	65_M	0.972	1.00
36_K	39_E	0.971	1.00
63_M	89_A	0.968	1.00
67_V	93_Y	0.958	1.00
65_M	68_A	0.956	1.00
259_K	302_E	0.955	1.00
36_K	278_V	0.953	1.00
119_V	124_E	0.937	1.00
79_M	142_I	0.926	1.00
271_A	274_L	0.925	1.00
234_I	265_D	0.923	1.00
163_K	167_F	0.920	1.00
210_K	258_G	0.910	1.00
283_A	287_S	0.896	1.00
196_G	199_E	0.889	1.00
229_E	242_N	0.886	1.00
135_A	139_V	0.883	1.00
181_A	294_V	0.881	1.00
233_T	239_R	0.881	1.00
66_A	151_V	0.878	1.00
210_K	307_S	0.878	1.00
167_F	200_Y	0.865	1.00
181_A	212_R	0.861	1.00
49_T	313_L	0.859	1.00
116_A	120_M	0.859	1.00
221_A	224_R	0.856	1.00
287_S	314_T	0.856	1.00
89_A	93_Y	0.849	1.00
25_H	64_V	0.844	1.00
130_G	134_D	0.843	1.00
184_V	190_I	0.838	1.00
181_A	293_G	0.837	1.00
162_Q	196_G	0.835	1.00
160_E	163_K	0.834	1.00
132_F	136_L	0.831	1.00
182_I	193_Y	0.828	1.00
161_G	165_A	0.826	1.00
222_I	243_P	0.825	1.00
91_A	123_A	0.818	1.00
268_I	289_A	0.814	1.00
29_T	53_N	0.811	1.00
79_M	139_V	0.810	1.00
77_T	148_I	0.809	1.00
95_A	121_Y	0.809	1.00
165_A	312_V	0.805	1.00
179_V	297_Q	0.803	1.00
38_S	41_L	0.803	1.00
136_L	139_V	0.799	1.00
290_S	314_T	0.794	1.00
165_A	193_Y	0.792	1.00
92_A	96_R	0.791	1.00
47_V	311_A	0.787	1.00
291_I	313_L	0.787	1.00
238_I	286_G	0.786	1.00
49_T	52_V	0.785	1.00
65_M	157_Y	0.783	1.00
177_P	209_P	0.781	1.00
20_P	33_H	0.779	1.00
291_I	311_A	0.776	1.00
41_L	274_L	0.771	1.00
254_E	257_N	0.771	1.00
20_P	23_T	0.770	1.00
190_I	253_A	0.769	1.00
159_I	249_A	0.766	1.00
34_L	279_E	0.765	1.00
102_I	146_S	0.764	1.00
165_A	189_N	0.758	1.00
155_N	159_I	0.752	1.00
104_I	126_I	0.750	1.00
170_C	197_F	0.745	1.00
103_V	118_A	0.745	1.00
71_K	75_N	0.745	1.00
173_L	308_K	0.741	1.00
177_P	308_K	0.741	1.00
253_A	257_N	0.736	1.00
183_P	314_T	0.734	1.00
282_F	317_G	0.733	1.00
221_A	241_G	0.732	1.00
252_A	256_S	0.731	1.00
195_K	199_E	0.730	1.00
44_E	306_G	0.728	1.00
251_K	254_E	0.728	1.00
76_D	100_K	0.726	1.00
102_I	142_I	0.722	1.00
81_A	132_F	0.720	1.00
79_M	143_C	0.720	1.00
34_L	291_I	0.720	1.00
235_A	238_I	0.719	1.00
37_L	295_L	0.718	1.00
297_Q	302_E	0.718	1.00
143_C	148_I	0.718	1.00
181_A	309_V	0.713	1.00
119_V	127_A	0.712	1.00
180_L	312_V	0.712	1.00
283_A	288_C	0.710	1.00
295_L	299_K	0.710	1.00
75_N	99_M	0.709	1.00
109_K	130_G	0.709	1.00
77_T	146_S	0.707	1.00
102_I	148_I	0.705	1.00
88_A	118_A	0.705	1.00
159_I	195_K	0.704	1.00
222_I	253_A	0.702	1.00
107_N	127_A	0.702	1.00
39_E	42_G	0.701	1.00
323_T	326_D	0.699	1.00
173_L	176_A	0.694	1.00
269_L	285_P	0.693	1.00
297_Q	303_I	0.692	1.00
35_P	38_S	0.692	1.00
66_A	158_R	0.689	1.00
43_I	298_V	0.689	1.00
41_L	295_L	0.689	1.00
134_D	138_I	0.688	1.00
176_A	310_V	0.682	1.00
165_A	169_V	0.681	1.00
63_M	93_Y	0.680	1.00
184_V	260_I	0.680	1.00
226_E	229_E	0.680	1.00
142_I	145_K	0.676	1.00
275_I	279_E	0.674	1.00
139_V	150_L	0.670	1.00
193_Y	197_F	0.670	1.00
70_A	149_A	0.666	1.00
78_I	99_M	0.665	1.00
128_I	138_I	0.664	1.00
247_D	251_K	0.661	1.00
176_A	308_K	0.661	1.00
210_K	302_E	0.660	1.00
222_I	260_I	0.660	1.00
58_F	189_N	0.660	1.00
272_Y	324_A	0.656	1.00
21_A	68_A	0.656	1.00
179_V	304_P	0.656	1.00
113_G	322_N	0.651	1.00
81_A	150_L	0.651	1.00
112_F	119_V	0.650	1.00
105_I	115_L	0.649	1.00
191_T	195_K	0.648	1.00
88_A	117_Q	0.648	1.00
242_N	247_D	0.647	1.00
48_K	168_E	0.647	1.00
169_V	193_Y	0.647	1.00
168_E	172_Q	0.645	1.00
244_A	247_D	0.644	1.00
56_G	316_N	0.641	1.00
152_N	155_N	0.639	1.00
43_I	307_S	0.636	1.00
78_I	101_C	0.635	1.00
26_E	60_D	0.635	1.00
51_G	316_N	0.635	1.00
322_N	326_D	0.634	1.00
294_V	309_V	0.633	1.00
47_V	291_I	0.628	1.00
174_G	177_P	0.624	1.00
198_K	256_S	0.624	1.00
38_S	44_E	0.624	1.00
240_I	243_P	0.623	1.00
216_A	238_I	0.623	1.00
110_I	115_L	0.621	1.00
114_K	236_T	0.621	1.00
84_G	87_S	0.620	1.00
272_Y	318_L	0.619	1.00
27_G	54_P	0.618	1.00
298_V	303_I	0.618	1.00
291_I	295_L	0.615	1.00
37_L	291_I	0.614	1.00
259_K	297_Q	0.611	1.00
270_H	273_Q	0.610	1.00
49_T	281_V	0.609	1.00
142_I	148_I	0.606	1.00
183_P	290_S	0.606	1.00
182_I	190_I	0.605	1.00
143_C	146_S	0.604	1.00
180_L	209_P	0.604	1.00
70_A	74_G	0.603	1.00
31_L	46_H	0.603	1.00
170_C	173_L	0.603	1.00
214_F	261_D	0.601	1.00
87_S	103_V	0.601	1.00
104_I	128_I	0.601	1.00
133_D	136_L	0.601	1.00
101_C	123_A	0.598	1.00
43_I	306_G	0.598	1.00
40_Q	295_L	0.594	1.00
79_M	104_I	0.593	1.00
184_V	222_I	0.593	1.00
299_K	302_E	0.591	1.00
169_V	180_L	0.590	1.00
43_I	309_V	0.589	1.00
293_G	297_Q	0.589	1.00
22_L	25_H	0.589	1.00
81_A	151_V	0.589	1.00
198_K	255_E	0.588	1.00
51_G	281_V	0.586	1.00
171_E	200_Y	0.585	1.00
275_I	313_L	0.585	1.00
62_G	66_A	0.584	1.00
105_I	110_I	0.583	1.00
38_S	43_I	0.583	1.00
27_G	53_N	0.582	1.00
76_D	147_P	0.581	1.00
263_V	293_G	0.580	1.00
78_I	151_V	0.580	1.00
303_I	306_G	0.580	1.00
272_Y	285_P	0.580	1.00
218_G	231_P	0.574	1.00
100_K	148_I	0.572	1.00
37_L	274_L	0.569	1.00
212_R	297_Q	0.568	1.00
92_A	95_A	0.568	1.00
193_Y	211_M	0.566	1.00
37_L	271_A	0.566	1.00
225_N	254_E	0.566	1.00
31_L	172_Q	0.559	1.00
237_A	286_G	0.559	1.00
69_K	75_N	0.559	1.00
275_I	281_V	0.559	1.00
222_I	249_A	0.558	1.00
148_I	152_N	0.558	1.00
159_I	248_K	0.557	1.00
180_L	211_M	0.556	1.00
215_E	221_A	0.555	1.00
124_E	146_S	0.555	1.00
299_K	303_I	0.554	1.00
180_L	310_V	0.554	1.00
63_M	90_A	0.552	1.00
110_I	236_T	0.549	1.00
160_E	195_K	0.549	1.00
265_D	269_L	0.546	1.00
220_A	225_N	0.544	1.00
163_K	195_K	0.543	1.00
80_C	90_A	0.543	1.00
34_L	37_L	0.541	1.00
47_V	283_A	0.541	1.00
81_A	136_L	0.540	1.00
86_T	151_V	0.540	1.00
47_V	281_V	0.536	1.00
54_P	60_D	0.536	1.00
269_L	324_A	0.536	1.00
34_L	38_S	0.536	1.00
214_F	289_A	0.536	1.00
156_P	248_K	0.535	1.00
37_L	41_L	0.534	1.00
303_I	309_V	0.533	1.00
169_V	177_P	0.532	1.00
169_V	312_V	0.532	1.00
26_E	64_V	0.532	1.00
66_A	149_A	0.530	1.00
117_Q	120_M	0.529	1.00
91_A	118_A	0.529	1.00
66_A	157_Y	0.529	1.00
90_A	103_V	0.527	1.00
60_D	92_A	0.526	1.00
266_D	269_L	0.523	1.00
251_K	256_S	0.523	1.00
75_N	149_A	0.522	1.00
170_C	174_G	0.521	1.00
43_I	305_K	0.519	1.00
138_I	145_K	0.515	1.00
322_N	325_V	0.514	0.99
215_E	223_V	0.514	0.99
167_F	199_E	0.512	0.99
61_R	168_E	0.512	0.99
47_V	287_S	0.510	0.99
224_R	228_I	0.510	0.99
213_G	257_N	0.508	0.99
76_D	149_A	0.507	0.99
77_T	124_E	0.506	0.99
25_H	52_V	0.503	0.99
37_L	278_V	0.501	0.99
178_D	310_V	0.500	0.99
91_A	101_C	0.500	0.99

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3aeyA	2	0.9858	100	0.153	Contact Map
2zsjA	2	0.9858	100	0.154	Contact Map
2d1fA	2	0.983	100	0.154	Contact Map
1e5xA	2	0.9489	100	0.196	Contact Map
1tdjA	2	0.9489	100	0.23	Contact Map
2gn0A	2	0.9034	100	0.242	Contact Map
1v71A	2	0.8807	100	0.246	Contact Map
2pqmA	2	0.9148	100	0.253	Contact Map
1ve5A	3	0.8438	100	0.254	Contact Map
2q3bA	2	0.8267	100	0.255	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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