CTPB - BACSU - GREMLIN Contacts

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CTPB - Carboxy-terminal processing protease CtpB

UniProt:	O35002	Sequences: MNQKIMAVIAAGSMLFGGAGVYAGINLLEMDKPQTAAVPATAQADSERDKAMDKIEKAYELISNEYVEKVDREKLLEGAIQGMLSTLNDPYSVYMDKQTAKQFSDSLDSSFEGIGAEVGMEDGKIIIVSPFKKSPAEKAGLKPNDEIISINGESMAGKDLNHAVLKIRGKKGSSVSMKIQRPGTKKQLSFRIKRAEIPLETVFASEKKVQGHSVGYIAISTFSEHTAEDFAKALRELEKKEIEGLVIDVRGNPGGYLQSVEEILKHFVTKDQPYIQIAERNGDKKRYFSTLTHKKAYPVNVITDKGSASASEILAGALKEAGHYDVVGDTSFGKGTVQQAVPMGDGSNIKLTLYKWLTPNGNWIHKKGIEPTIAIKQPDYFSAGPLQLKEPLKVDMNNEDVKHAQVLLKGLSFDPGREDGYFSKDMKKAVMAFQDQNKLNKTGVIDTRTAETLNQQIEKKKSDEKNDLQLQTALKSLFVN	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	480 (389)
Sequences:	3056 (2226)
Seq/√Len:	112.9

ECOLI - PRC
BACSU - CTPB CTPA

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
303_T	331_S	10.064	1.00
318_L	324_Y	8.547	1.00
251_G	304_D	7.693	1.00
174_S	191_R	4.857	1.00
174_S	193_K	4.275	1.00
149_S	178_K	4.222	1.00
242_I	245_L	3.882	1.00
219_I	226_T	3.815	1.00
319_K	362_N	3.372	1.00
219_I	263_I	3.234	1.00
236_E	240_K	3.132	1.00
247_I	314_L	3.127	1.00
263_I	314_L	2.998	1.00
305_K	329_D	2.991	1.00
153_E	166_K	2.945	1.00
204_A	233_A	2.942	1.00
171_K	195_A	2.788	1.00
214_V	244_G	2.750	1.00
213_S	243_E	2.713	1.00
233_A	236_E	2.698	1.00
307_S	311_S	2.691	1.00
127_I	141_L	2.644	1.00
227_A	262_E	2.506	1.00
124_K	146_E	2.468	1.00
300_N	327_V	2.462	1.00
176_S	189_S	2.426	1.00
112_E	171_K	2.414	1.00
100_A	348_N	2.390	1.00
215_G	237_L	2.370	1.00
141_L	179_I	2.352	1.00
234_L	245_L	2.344	1.00
138_K	195_A	2.298	1.00
176_S	191_R	2.290	1.00
330_T	370_E	2.270	1.00
303_T	326_V	2.229	1.00
316_G	369_I	2.228	1.00
179_I	190_F	2.219	1.00
268_V	321_A	2.188	1.00
315_A	326_V	2.178	1.00
181_R	188_L	2.127	1.00
230_F	267_F	2.124	1.00
244_G	298_P	2.097	1.00
327_V	373_I	2.073	1.00
71_D	74_K	1.961	1.00
126_I	146_E	1.948	1.00
209_V	242_I	1.928	1.00
125_I	163_A	1.924	1.00
273_P	276_Q	1.921	1.00
178_K	189_S	1.889	1.00
121_E	126_I	1.820	1.00
264_L	314_L	1.792	1.00
232_K	236_E	1.781	1.00
229_D	232_K	1.763	1.00
225_H	228_E	1.750	1.00
63_S	72_R	1.750	1.00
370_E	374_A	1.739	1.00
149_S	152_G	1.736	1.00
264_L	274_Y	1.721	1.00
265_K	274_Y	1.710	1.00
385_P	391_P	1.629	1.00
219_I	247_I	1.616	1.00
93_V	350_K	1.608	1.00
150_I	155_M	1.563	1.00
385_P	395_D	1.538	1.00
96_D	99_T	1.516	1.00
247_I	299_V	1.511	1.00
78_G	86_T	1.508	1.00
234_L	294_K	1.501	1.00
432_A	435_D	1.486	1.00
238_E	297_Y	1.479	1.00
110_S	196_E	1.466	1.00
68_E	355_K	1.463	1.00
329_D	376_K	1.448	1.00
177_M	192_I	1.437	1.00
107_L	256_Y	1.437	1.00
112_E	196_E	1.426	1.00
264_L	268_V	1.407	1.00
120_M	125_I	1.401	1.00
402_K	405_Q	1.400	1.00
231_A	235_R	1.381	1.00
178_K	187_Q	1.378	1.00
430_V	433_F	1.377	1.00
146_E	180_Q	1.363	1.00
180_Q	187_Q	1.358	1.00
387_Q	391_P	1.355	1.00
260_V	264_L	1.348	1.00
316_G	358_T	1.341	1.00
228_E	232_K	1.326	1.00
221_T	253_P	1.319	1.00
415_P	419_D	1.302	0.99
401_V	404_A	1.294	0.99
141_L	190_F	1.292	0.99
431_M	434_Q	1.291	0.99
261_E	274_Y	1.285	0.99
57_K	344_G	1.284	0.99
269_T	293_H	1.276	0.99
226_T	263_I	1.276	0.99
314_L	318_L	1.273	0.99
132_K	137_E	1.269	0.99
139_A	190_F	1.267	0.99
319_K	372_T	1.265	0.99
217_I	230_F	1.246	0.99
118_V	160_L	1.235	0.99
95_M	103_F	1.235	0.99
429_A	432_A	1.228	0.99
265_K	290_T	1.227	0.99
413_F	416_G	1.226	0.99
278_A	357_L	1.225	0.99
428_K	431_M	1.215	0.99
385_P	388_L	1.213	0.99
102_Q	105_D	1.208	0.99
258_Q	262_E	1.208	0.99
385_P	392_L	1.201	0.99
158_K	166_K	1.199	0.99
230_F	263_I	1.191	0.99
92_S	351_L	1.187	0.99
259_S	262_E	1.186	0.99
169_G	194_R	1.181	0.99
278_A	284_K	1.160	0.99
279_E	282_G	1.157	0.99
177_M	190_F	1.155	0.99
231_A	266_H	1.150	0.99
200_E	229_D	1.145	0.99
269_T	272_Q	1.142	0.99
201_T	226_T	1.139	0.99
77_E	94_Y	1.136	0.99
241_E	244_G	1.134	0.99
430_V	434_Q	1.133	0.99
385_P	394_V	1.130	0.99
184_T	188_L	1.124	0.98
101_K	105_D	1.123	0.98
227_A	259_S	1.121	0.98
91_Y	365_H	1.120	0.98
237_L	245_L	1.115	0.98
162_H	165_L	1.105	0.98
424_K	428_K	1.102	0.98
119_G	128_V	1.090	0.98
114_I	175_V	1.089	0.98
62_I	351_L	1.089	0.98
420_G	423_S	1.087	0.98
320_E	362_N	1.073	0.98
385_P	390_E	1.071	0.98
279_E	283_D	1.071	0.98
94_Y	347_S	1.070	0.98
215_G	242_I	1.069	0.98
211_G	214_V	1.066	0.98
179_I	188_L	1.061	0.98
145_D	181_R	1.059	0.98
78_G	82_G	1.056	0.98
227_A	263_I	1.053	0.98
256_Y	259_S	1.052	0.98
404_A	408_L	1.051	0.98
316_G	362_N	1.047	0.98
416_G	420_G	1.045	0.98
171_K	196_E	1.043	0.98
428_K	432_A	1.040	0.97
70_V	75_L	1.039	0.97
84_L	349_I	1.036	0.97
59_Y	63_S	1.034	0.97
117_E	128_V	1.031	0.97
261_E	275_I	1.026	0.97
384_G	387_Q	1.010	0.97
337_V	354_Y	1.006	0.97
391_P	394_V	0.995	0.97
219_I	230_F	0.994	0.97
253_P	307_S	0.994	0.97
358_T	369_I	0.994	0.97
260_V	314_L	0.992	0.97
120_M	123_G	0.989	0.97
148_I	187_Q	0.983	0.96
417_R	420_G	0.983	0.96
411_L	415_P	0.983	0.96
215_G	245_L	0.979	0.96
59_Y	72_R	0.977	0.96
192_I	195_A	0.975	0.96
409_K	412_S	0.969	0.96
91_Y	336_T	0.967	0.96
129_S	253_P	0.967	0.96
159_D	162_H	0.958	0.96
418_E	421_Y	0.958	0.96
130_P	306_G	0.957	0.96
129_S	143_P	0.956	0.96
339_Q	353_L	0.956	0.96
249_V	311_S	0.952	0.96
150_I	175_V	0.950	0.96
326_V	331_S	0.950	0.96
390_E	393_K	0.949	0.96
420_G	426_M	0.947	0.96
384_G	391_P	0.946	0.96
265_K	291_L	0.946	0.96
245_L	299_V	0.944	0.96
264_L	318_L	0.942	0.96
320_E	360_N	0.940	0.95
237_L	242_I	0.939	0.95
173_S	194_R	0.935	0.95
400_D	404_A	0.934	0.95
391_P	402_K	0.930	0.95
429_A	435_D	0.929	0.95
301_V	318_L	0.927	0.95
133_K	138_K	0.926	0.95
265_K	272_Q	0.922	0.95
246_V	300_N	0.921	0.95
247_I	301_V	0.921	0.95
135_P	139_A	0.916	0.95
408_L	411_L	0.915	0.95
127_I	190_F	0.913	0.95
103_F	340_A	0.912	0.95
299_V	324_Y	0.912	0.95
77_E	81_Q	0.906	0.94
148_I	180_Q	0.906	0.94
408_L	412_S	0.898	0.94
105_D	111_F	0.898	0.94
390_E	394_V	0.898	0.94
387_Q	395_D	0.897	0.94
339_Q	354_Y	0.897	0.94
400_D	403_H	0.894	0.94
151_N	176_S	0.886	0.94
117_E	129_S	0.885	0.94
111_F	168_R	0.870	0.93
429_A	434_Q	0.869	0.93
325_D	373_I	0.866	0.93
414_D	418_E	0.860	0.93
315_A	319_K	0.859	0.93
118_V	163_A	0.850	0.92
47_E	50_K	0.849	0.92
338_Q	352_T	0.843	0.92
415_P	423_S	0.843	0.92
163_A	167_I	0.842	0.92
301_V	324_Y	0.842	0.92
427_K	431_M	0.836	0.92
387_Q	390_E	0.836	0.92
100_A	104_S	0.836	0.92
426_M	429_A	0.833	0.92
287_Y	290_T	0.832	0.92
56_E	60_E	0.831	0.91
213_S	244_G	0.831	0.91
308_A	334_K	0.831	0.91
194_R	197_I	0.830	0.91
141_L	188_L	0.830	0.91
113_G	335_G	0.829	0.91
417_R	421_Y	0.829	0.91
112_E	134_S	0.829	0.91
81_Q	99_T	0.829	0.91
175_V	194_R	0.828	0.91
393_K	396_M	0.827	0.91
230_F	266_H	0.825	0.91
62_I	70_V	0.824	0.91
414_D	420_G	0.823	0.91
112_E	167_I	0.823	0.91
273_P	287_Y	0.822	0.91
316_G	359_P	0.821	0.91
336_T	365_H	0.820	0.91
273_P	278_A	0.820	0.91
61_L	65_E	0.819	0.91
416_G	419_D	0.817	0.91
160_L	164_V	0.813	0.91
136_A	139_A	0.813	0.91
423_S	426_M	0.812	0.91
172_G	195_A	0.811	0.90
393_K	398_N	0.808	0.90
54_K	77_E	0.806	0.90
308_A	332_F	0.806	0.90
277_I	354_Y	0.804	0.90
265_K	295_K	0.804	0.90
431_M	435_D	0.802	0.90
320_E	323_H	0.796	0.90
269_T	289_S	0.794	0.90
268_V	274_Y	0.793	0.89
111_F	131_F	0.793	0.89
413_F	417_R	0.791	0.89
367_K	370_E	0.790	0.89
419_D	423_S	0.786	0.89
90_P	332_F	0.784	0.89
257_L	275_I	0.783	0.89
394_V	427_K	0.783	0.89
393_K	397_N	0.778	0.89
412_S	419_D	0.776	0.88
411_L	420_G	0.774	0.88
150_I	166_K	0.774	0.88
249_V	314_L	0.773	0.88
158_K	162_H	0.771	0.88
414_D	421_Y	0.771	0.88
390_E	398_N	0.771	0.88
357_L	363_W	0.770	0.88
422_F	426_M	0.769	0.88
152_G	176_S	0.768	0.88
149_S	189_S	0.766	0.88
79_A	82_G	0.764	0.88
341_V	351_L	0.763	0.88
110_S	225_H	0.763	0.88
114_I	167_I	0.762	0.88
130_P	143_P	0.760	0.87
398_N	401_V	0.760	0.87
410_G	413_F	0.759	0.87
226_T	230_F	0.758	0.87
76_L	80_I	0.757	0.87
381_F	390_E	0.757	0.87
210_Q	213_S	0.756	0.87
105_D	168_R	0.755	0.87
429_A	433_F	0.753	0.87
148_I	178_K	0.752	0.87
48_R	51_A	0.752	0.87
401_V	406_V	0.751	0.87
201_T	223_S	0.750	0.87
139_A	192_I	0.749	0.87
312_E	334_K	0.746	0.86
116_A	141_L	0.745	0.86
110_S	170_K	0.745	0.86
230_F	234_L	0.744	0.86
394_V	398_N	0.744	0.86
334_K	338_Q	0.744	0.86
167_I	177_M	0.744	0.86
155_M	158_K	0.742	0.86
212_H	243_E	0.740	0.86
124_K	156_A	0.740	0.86
54_K	345_D	0.739	0.86
273_P	289_S	0.737	0.86
276_Q	361_G	0.737	0.86
103_F	350_K	0.737	0.86
401_V	405_Q	0.736	0.86
313_I	337_V	0.735	0.86
427_K	430_V	0.734	0.86
427_K	433_F	0.733	0.85
308_A	312_E	0.731	0.85
224_E	256_Y	0.729	0.85
408_L	413_F	0.729	0.85
281_N	284_K	0.727	0.85
230_F	247_I	0.726	0.85
98_Q	165_L	0.722	0.85
149_S	154_S	0.722	0.85
272_Q	289_S	0.721	0.84
79_A	83_M	0.719	0.84
393_K	400_D	0.718	0.84
316_G	320_E	0.717	0.84
114_I	169_G	0.716	0.84
127_I	147_I	0.716	0.84
183_G	187_Q	0.716	0.84
356_W	364_I	0.715	0.84
405_Q	417_R	0.714	0.84
227_A	231_A	0.714	0.84
405_Q	420_G	0.714	0.84
412_S	415_P	0.710	0.84
294_K	297_Y	0.709	0.83
117_E	131_F	0.707	0.83
245_L	297_Y	0.707	0.83
219_I	314_L	0.704	0.83
396_M	402_K	0.704	0.83
113_G	194_R	0.703	0.83
300_N	325_D	0.702	0.83
404_A	417_R	0.696	0.82
316_G	360_N	0.695	0.82
258_Q	263_I	0.694	0.82
425_D	432_A	0.693	0.82
424_K	427_K	0.692	0.82
405_Q	408_L	0.691	0.82
54_K	347_S	0.689	0.82
416_G	423_S	0.688	0.82
169_G	173_S	0.687	0.82
416_G	435_D	0.687	0.82
342_P	348_N	0.686	0.81
90_P	365_H	0.684	0.81
152_G	189_S	0.680	0.81
408_L	415_P	0.679	0.81
289_S	293_H	0.678	0.81
97_K	347_S	0.677	0.81
217_I	233_A	0.675	0.80
118_V	164_V	0.674	0.80
331_S	368_G	0.673	0.80
58_A	62_I	0.672	0.80
320_E	358_T	0.672	0.80
423_S	429_A	0.670	0.80
413_F	419_D	0.669	0.80
418_E	425_D	0.669	0.80
420_G	430_V	0.668	0.80
418_E	423_S	0.668	0.80
100_A	107_L	0.667	0.80
388_L	391_P	0.667	0.80
112_E	170_K	0.665	0.79
247_I	318_L	0.660	0.79
116_A	127_I	0.658	0.79
142_K	181_R	0.658	0.79
400_D	409_K	0.656	0.78
233_A	237_L	0.656	0.78
286_R	289_S	0.656	0.78
148_I	165_L	0.655	0.78
194_R	313_I	0.651	0.78
421_Y	425_D	0.651	0.78
53_D	57_K	0.648	0.78
422_F	427_K	0.648	0.78
415_P	422_F	0.646	0.77
282_G	288_F	0.644	0.77
412_S	416_G	0.642	0.77
396_M	399_E	0.640	0.77
313_I	364_I	0.639	0.77
237_L	240_K	0.639	0.77
74_K	78_G	0.639	0.77
385_P	389_K	0.634	0.76
416_G	421_Y	0.634	0.76
249_V	301_V	0.633	0.76
91_Y	363_W	0.632	0.76
295_K	299_V	0.632	0.76
269_T	294_K	0.632	0.76
50_K	53_D	0.628	0.75
334_K	352_T	0.628	0.75
209_V	240_K	0.628	0.75
275_I	337_V	0.627	0.75
126_I	163_A	0.627	0.75
355_K	363_W	0.623	0.75
52_M	56_E	0.623	0.75
201_T	221_T	0.622	0.75
424_K	431_M	0.621	0.75
257_L	337_V	0.621	0.75
180_Q	183_G	0.617	0.74
95_M	347_S	0.617	0.74
238_E	296_A	0.617	0.74
155_M	166_K	0.616	0.74
142_K	189_S	0.616	0.74
95_M	99_T	0.615	0.74
428_K	433_F	0.614	0.74
111_F	164_V	0.613	0.74
391_P	397_N	0.611	0.73
46_S	50_K	0.611	0.73
398_N	403_H	0.611	0.73
90_P	308_A	0.610	0.73
257_L	313_I	0.610	0.73
244_G	300_N	0.609	0.73
379_D	383_A	0.608	0.73
153_E	158_K	0.608	0.73
392_L	396_M	0.607	0.73
408_L	416_G	0.607	0.73
278_A	285_K	0.606	0.73
412_S	420_G	0.604	0.73
242_I	297_Y	0.603	0.72
80_I	83_M	0.603	0.72
281_N	379_D	0.602	0.72
242_I	299_V	0.601	0.72
55_I	59_Y	0.601	0.72
118_V	130_P	0.600	0.72
270_K	292_T	0.598	0.72
400_D	408_L	0.597	0.72
340_A	343_M	0.597	0.72
391_P	400_D	0.597	0.72
307_S	337_V	0.595	0.71
413_F	422_F	0.595	0.71
407_L	410_G	0.595	0.71
172_G	194_R	0.594	0.71
422_F	430_V	0.594	0.71
127_I	360_N	0.592	0.71
327_V	375_I	0.590	0.71
299_V	318_L	0.587	0.70
209_V	213_S	0.586	0.70
227_A	266_H	0.586	0.70
426_M	430_V	0.586	0.70
308_A	352_T	0.585	0.70
48_R	52_M	0.584	0.70
386_L	390_E	0.581	0.70
391_P	395_D	0.581	0.70
80_I	84_L	0.580	0.70
335_G	352_T	0.580	0.70
303_T	371_P	0.579	0.69
401_V	408_L	0.578	0.69
272_Q	321_A	0.578	0.69
308_A	338_Q	0.578	0.69
320_E	361_G	0.577	0.69
125_I	147_I	0.576	0.69
253_P	306_G	0.576	0.69
57_K	61_L	0.574	0.69
332_F	365_H	0.574	0.69
123_G	134_S	0.574	0.69
232_K	235_R	0.572	0.68
251_G	306_G	0.566	0.68
411_L	416_G	0.566	0.68
402_K	406_V	0.565	0.68
273_P	286_R	0.563	0.67
106_S	221_T	0.563	0.67
313_I	338_Q	0.562	0.67
120_M	160_L	0.561	0.67
400_D	405_Q	0.561	0.67
89_D	334_K	0.560	0.67
216_Y	237_L	0.560	0.67
272_Q	290_T	0.560	0.67
103_F	107_L	0.559	0.67
209_V	241_E	0.559	0.67
46_S	51_A	0.559	0.67
132_K	220_S	0.559	0.67
426_M	434_Q	0.558	0.67
238_E	295_K	0.558	0.67
416_G	424_K	0.558	0.67
89_D	352_T	0.558	0.67
422_F	433_F	0.557	0.66
252_N	255_G	0.556	0.66
316_G	356_W	0.556	0.66
407_L	412_S	0.555	0.66
335_G	338_Q	0.554	0.66
84_L	93_V	0.554	0.66
114_I	118_V	0.554	0.66
115_G	334_K	0.553	0.66
114_I	194_R	0.552	0.66
339_Q	349_I	0.551	0.66
168_R	313_I	0.551	0.66
183_G	186_K	0.551	0.66
58_A	61_L	0.550	0.65
320_E	357_L	0.547	0.65
315_A	369_I	0.547	0.65
182_P	187_Q	0.547	0.65
402_K	411_L	0.546	0.65
164_V	168_R	0.546	0.65
204_A	236_E	0.545	0.65
207_K	210_Q	0.544	0.65
423_S	431_M	0.544	0.65
43_Q	46_S	0.543	0.65
387_Q	398_N	0.542	0.64
276_Q	284_K	0.542	0.64
413_F	420_G	0.541	0.64
92_S	226_T	0.541	0.64
113_G	337_V	0.540	0.64
303_T	307_S	0.540	0.64
337_V	364_I	0.540	0.64
333_G	368_G	0.539	0.64
421_Y	426_M	0.538	0.64
132_K	203_F	0.538	0.64
317_A	358_T	0.538	0.64
396_M	401_V	0.538	0.64
401_V	413_F	0.537	0.64
409_K	413_F	0.537	0.64
410_G	419_D	0.534	0.63
84_L	92_S	0.533	0.63
409_K	415_P	0.533	0.63
76_L	83_M	0.531	0.63
329_D	374_A	0.531	0.63
357_L	365_H	0.531	0.63
396_M	400_D	0.531	0.63
319_K	323_H	0.530	0.63
390_E	414_D	0.529	0.63
409_K	424_K	0.529	0.63
96_D	347_S	0.528	0.62
412_S	421_Y	0.527	0.62
198_P	229_D	0.526	0.62
356_W	365_H	0.525	0.62
422_F	434_Q	0.524	0.62
425_D	429_A	0.523	0.62
49_D	56_E	0.523	0.62
77_E	97_K	0.522	0.61
416_G	422_F	0.521	0.61
421_Y	429_A	0.521	0.61
220_S	311_S	0.521	0.61
238_E	245_L	0.520	0.61
277_I	337_V	0.520	0.61
51_A	55_I	0.518	0.61
234_L	299_V	0.517	0.61
67_V	341_V	0.517	0.61
340_A	348_N	0.517	0.61
98_Q	161_N	0.515	0.60
323_H	365_H	0.515	0.60
263_I	266_H	0.514	0.60
262_E	327_V	0.513	0.60
124_K	180_Q	0.513	0.60
386_L	391_P	0.511	0.60
418_E	426_M	0.511	0.60
105_D	349_I	0.511	0.60
391_P	396_M	0.511	0.60
181_R	326_V	0.510	0.60
210_Q	231_A	0.510	0.60
306_G	383_A	0.509	0.60
403_H	406_V	0.509	0.60
169_G	197_I	0.508	0.59
381_F	387_Q	0.508	0.59
43_Q	47_E	0.508	0.59
54_K	94_Y	0.508	0.59
341_V	349_I	0.507	0.59
209_V	237_L	0.506	0.59
285_K	289_S	0.506	0.59
194_R	337_V	0.505	0.59
170_K	383_A	0.503	0.59
401_V	426_M	0.503	0.59
412_S	426_M	0.503	0.59
111_F	199_L	0.502	0.59
323_H	356_W	0.501	0.58
240_K	399_E	0.501	0.58
329_D	377_Q	0.501	0.58
203_F	220_S	0.501	0.58
128_V	143_P	0.501	0.58
409_K	416_G	0.500	0.58
135_P	197_I	0.500	0.58

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4c2eA	2	0.9062	100	0.252	Contact Map
4ql6A	2	0.725	100	0.343	Contact Map
1fc6A	1	0.7688	100	0.351	Contact Map
3k50A	1	0.7021	100	0.388	Contact Map
4ghnA	1	0.7417	100	0.441	Contact Map
1k32A	5	0.8	100	0.448	Contact Map
3dorA	2	0.7625	100	0.47	Contact Map
4lurA	1	0.6062	100	0.486	Contact Map
1j7xA	1	0.5958	100	0.512	Contact Map
4l8kA	3	0.6312	100	0.553	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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