GREMLIN Database
DPO1 - DNA polymerase I
UniProt: O34996 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 880 (867)
Sequences: 3500 (2359)
Seq/√Len: 80.1

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
219_S222_E6.3511.00
528_E545_K6.1061.00
760_E764_K4.3341.00
163_T166_H4.0461.00
476_E480_E3.9871.00
491_E816_A3.9861.00
770_L803_S3.7941.00
588_Q593_E3.7661.00
230_E234_E3.7511.00
677_E681_N3.6671.00
818_K822_K3.6061.00
521_K577_Y3.5341.00
29_D279_G3.5331.00
124_E144_T3.4501.00
235_F238_Q3.4341.00
501_V599_T3.3121.00
117_G248_I3.2211.00
737_G741_D3.1341.00
196_P235_F3.1261.00
510_E639_K3.0891.00
236_K240_L3.0411.00
752_A756_D2.9911.00
540_V544_E2.9611.00
671_K863_D2.8421.00
226_K230_E2.8311.00
528_E541_I2.8211.00
174_T177_Q2.8091.00
267_N270_Q2.7811.00
198_V228_L2.7701.00
652_L874_P2.7691.00
214_E243_K2.7171.00
478_F483_M2.7021.00
217_L240_L2.6791.00
195_V232_L2.6491.00
362_K366_E2.6161.00
209_Q222_E2.5941.00
95_E277_D2.5821.00
853_P857_E2.5311.00
217_L236_K2.5301.00
470_E475_L2.5261.00
523_H529_P2.5171.00
229_K233_E2.4881.00
682_D867_K2.4611.00
508_G593_E2.4561.00
828_L838_F2.4531.00
71_T244_E2.4531.00
515_L585_G2.4471.00
214_E240_L2.4421.00
696_V705_M2.4231.00
94_R106_E2.4171.00
526_A574_I2.4171.00
522_I532_I2.4141.00
98_D104_R2.3871.00
257_S260_G2.3871.00
374_V377_S2.3821.00
528_E540_V2.3791.00
28_N279_G2.3761.00
372_K393_G2.3671.00
215_K218_E2.3571.00
375_F398_T2.3521.00
481_L771_M2.3521.00
514_K517_E2.3251.00
217_L220_I2.3191.00
192_I246_A2.3191.00
825_K844_E2.3071.00
850_K854_E2.2901.00
541_I545_K2.2811.00
165_E169_E2.2661.00
165_E168_K2.2611.00
826_A844_E2.2471.00
498_K647_S2.2221.00
210_F223_V2.2131.00
818_K855_V2.2101.00
20_F85_E2.2101.00
751_K755_E2.2051.00
822_K847_I2.1971.00
810_K859_A2.1731.00
650_D842_K2.1631.00
6_K129_E2.1611.00
652_L842_K2.1531.00
759_Q763_Q2.1271.00
491_E820_K2.1251.00
525_I577_Y2.1201.00
507_M511_L2.1061.00
164_P176_E2.0661.00
468_E471_N2.0461.00
514_K580_Q2.0381.00
212_S215_K2.0211.00
396_F401_A2.0091.00
304_N307_T2.0041.00
366_E389_I2.0031.00
826_A848_L1.9981.00
272_I284_L1.9931.00
181_M207_L1.9891.00
121_K125_K1.9801.00
145_D164_P1.9751.00
816_A820_K1.9691.00
120_A147_T1.9651.00
396_F478_F1.9591.00
756_D760_E1.9561.00
215_K219_S1.9551.00
179_I247_T1.9531.00
413_D416_S1.9461.00
654_F840_A1.9361.00
697_A700_E1.9321.00
220_I229_K1.9241.00
721_S724_G1.9171.00
84_P87_S1.9021.00
546_I572_H1.8971.00
475_L479_E1.8951.00
838_F852_V1.8921.00
838_F848_L1.8871.00
687_T698_K1.8861.00
520_E529_P1.8801.00
516_K519_E1.8771.00
359_E362_K1.8761.00
651_W841_P1.8611.00
65_T70_G1.8581.00
95_E98_D1.8481.00
223_V232_L1.8461.00
523_H532_I1.8451.00
210_F219_S1.8381.00
771_M860_L1.8351.00
368_D392_K1.8171.00
168_K174_T1.8061.00
845_I849_E1.8021.00
220_I233_E1.7911.00
533_N581_Y1.7581.00
854_E858_H1.7521.00
818_K821_E1.7481.00
780_L791_A1.7441.00
819_L848_L1.7441.00
818_K854_E1.7341.00
327_I335_P1.7331.00
814_D855_V1.7251.00
274_I278_L1.7201.00
814_D817_A1.7171.00
874_P878_D1.7081.00
195_V239_A1.7061.00
30_K277_D1.7061.00
497_V829_L1.7001.00
611_N623_T1.6981.00
845_I872_S1.6951.00
464_K468_E1.6941.00
691_M697_A1.6931.00
82_T87_S1.6851.00
569_A576_D1.6781.00
400_L613_A1.6751.00
124_E147_T1.6721.00
810_K814_D1.6721.00
540_V545_K1.6641.00
17_Y21_F1.6541.00
671_K676_I1.6541.00
785_F788_R1.6541.00
205_K209_Q1.6461.00
576_D580_Q1.6451.00
514_K636_E1.6441.00
817_A821_E1.6411.00
243_K247_T1.6261.00
385_R494_S1.6201.00
64_K108_E1.6191.00
826_A841_P1.6061.00
521_K524_E1.5971.00
504_L643_A1.5881.00
517_E521_K1.5871.00
46_K50_D1.5841.00
382_V490_G1.5831.00
309_T360_V1.5811.00
755_E758_V1.5791.00
197_G231_K1.5771.00
231_K234_E1.5691.00
71_T241_M1.5601.00
121_K250_T1.5561.00
749_G752_A1.5530.99
173_L204_I1.5500.99
841_P844_E1.5430.99
376_D379_R1.5350.99
134_S139_L1.5250.99
164_P168_K1.5220.99
116_I132_V1.5200.99
503_R642_Q1.5190.99
779_E791_A1.5130.99
181_M185_M1.5120.99
311_V348_Y1.5080.99
225_G229_K1.5070.99
768_T774_R1.5030.99
481_L810_K1.5010.99
429_D433_Y1.4990.99
367_N370_Q1.4920.99
488_I813_I1.4920.99
181_M200_E1.4880.99
341_I350_I1.4870.99
231_K235_F1.4870.99
305_V356_V1.4850.99
654_F845_I1.4830.99
825_K843_E1.4820.99
665_V800_I1.4800.99
477_L481_L1.4790.99
419_K425_I1.4780.99
610_F830_L1.4760.99
512_G588_Q1.4690.99
848_L852_V1.4580.99
37_V278_L1.4580.99
96_L275_F1.4500.99
520_E524_E1.4480.99
124_E146_K1.4310.99
414_V458_I1.4280.99
244_E249_M1.4200.99
185_M200_E1.4180.99
117_G250_T1.4170.99
57_L261_L1.4150.99
8_V133_F1.4150.99
495_T827_R1.4090.99
689_T713_N1.4000.99
129_E146_K1.3950.99
59_A115_I1.3940.99
184_L202_T1.3820.99
32_V92_F1.3810.99
205_K225_G1.3790.99
352_K357_E1.3780.99
815_M838_F1.3770.99
711_A728_N1.3760.99
762_K788_R1.3760.99
418_A457_A1.3720.99
676_I680_T1.3720.99
118_T252_A1.3680.99
824_L844_E1.3620.99
41_A96_L1.3620.99
499_V599_T1.3600.99
840_A848_L1.3580.99
272_I276_K1.3540.99
492_M495_T1.3530.99
70_G109_Q1.3520.99
403_Y614_L1.3470.99
785_F789_S1.3470.99
166_H169_E1.3400.98
605_K647_S1.3390.98
23_L35_N1.3380.98
436_G440_A1.3350.98
519_E529_P1.3330.98
323_V454_K1.3310.98
673_E749_G1.3250.98
676_I863_D1.3200.98
673_E677_E1.3200.98
33_H88_E1.3180.98
502_D506_R1.3120.98
209_Q224_S1.3100.98
818_K851_L1.3090.98
204_I208_K1.3060.98
99_A274_I1.3040.98
508_G592_I1.3030.98
704_A708_Q1.3020.98
316_L367_N1.3020.98
270_Q273_A1.3010.98
849_E853_P1.3000.98
143_A149_V1.2920.98
521_K525_I1.2880.98
553_K557_G1.2860.98
766_Y774_R1.2860.98
110_Y253_P1.2860.98
16_A93_I1.2840.98
693_V711_A1.2770.98
65_T69_H1.2770.98
824_L847_I1.2760.98
570_D576_D1.2740.98
55_H128_F1.2740.98
121_K144_T1.2660.98
28_N32_V1.2640.98
846_E850_K1.2560.98
214_E218_E1.2550.98
462_R466_V1.2540.98
62_A108_E1.2540.98
207_L212_S1.2540.98
554_T557_G1.2530.98
12_G58_V1.2520.98
196_P238_Q1.2370.97
249_M252_A1.2340.97
456_L460_S1.2310.97
651_W827_R1.2300.97
217_L232_L1.2290.97
722_D737_G1.2230.97
345_T463_E1.2220.97
330_N333_E1.2200.97
152_T155_G1.2190.97
642_Q877_Y1.2190.97
759_Q762_K1.2180.97
815_M855_V1.2170.97
400_L486_A1.2110.97
683_M688_K1.2110.97
647_S651_W1.2090.97
376_D399_L1.2080.97
5_K128_F1.2070.97
503_R506_R1.2070.97
639_K642_Q1.2050.97
37_V92_F1.1970.97
130_V147_T1.1950.97
467_Q471_N1.1920.97
401_A478_F1.1910.97
122_S126_D1.1910.97
512_G516_K1.1900.97
236_K239_A1.1870.97
819_L826_A1.1860.97
210_F222_E1.1820.97
466_V470_E1.1810.97
143_A167_V1.1810.97
183_G246_A1.1790.97
21_F80_Q1.1780.97
555_K558_Y1.1780.97
807_I860_L1.1770.97
654_F852_V1.1760.97
875_S878_D1.1760.97
140_T149_V1.1740.97
825_K841_P1.1740.97
335_P387_Q1.1730.96
418_A426_V1.1720.96
324_V336_I1.1720.96
322_F384_L1.1710.96
790_F794_T1.1680.96
47_M133_F1.1650.96
652_L872_S1.1630.96
762_K792_E1.1620.96
573_D576_D1.1620.96
10_V15_L1.1610.96
738_A742_R1.1590.96
385_R491_E1.1560.96
282_T285_E1.1540.96
220_I232_L1.1520.96
322_F365_V1.1500.96
726_S733_R1.1480.96
275_F283_L1.1480.96
303_I307_T1.1470.96
692_D746_S1.1460.96
123_A130_V1.1440.96
269_E273_A1.1410.96
5_K54_T1.1410.96
36_A93_I1.1410.96
849_E872_S1.1370.96
192_I242_S1.1330.96
233_E236_K1.1310.96
570_D575_V1.1290.96
491_E495_T1.1280.96
498_K645_V1.1270.96
120_A250_T1.1250.96
362_K389_I1.1250.96
822_K855_V1.1240.96
668_H862_L1.1200.95
846_E849_E1.1190.95
508_G588_Q1.1160.95
857_E867_K1.1140.95
723_Y733_R1.1130.95
319_P373_W1.1120.95
45_M275_F1.1120.95
561_S564_V1.1070.95
325_E454_K1.1060.95
66_T69_H1.1040.95
217_L239_A1.1040.95
518_Y523_H1.1020.95
777_I791_A1.1020.95
541_I574_I1.1020.95
842_K874_P1.1020.95
37_V93_I1.1000.95
768_T772_H1.0980.95
572_H575_V1.0970.95
200_E204_I1.0930.95
177_Q211_D1.0930.95
708_Q735_E1.0920.95
374_V380_A1.0920.95
367_N372_K1.0890.95
742_R745_E1.0860.95
371_K395_E1.0850.95
99_A270_Q1.0840.95
687_T703_S1.0840.95
95_E270_Q1.0830.95
653_I837_I1.0780.94
42_M286_R1.0780.94
33_H85_E1.0770.94
807_I866_L1.0740.94
180_D243_K1.0710.94
656_A870_F1.0700.94
320_S364_W1.0690.94
216_L223_V1.0680.94
520_E523_H1.0670.94
651_W839_E1.0660.94
305_V309_T1.0650.94
858_H861_A1.0640.94
110_Y252_A1.0640.94
688_K692_D1.0630.94
668_H863_D1.0620.94
91_P95_E1.0610.94
327_I379_R1.0610.94
437_A440_A1.0600.94
328_G334_E1.0590.94
808_I828_L1.0590.94
501_V505_K1.0580.94
139_L248_I1.0580.94
409_N420_D1.0580.94
230_E233_E1.0560.94
754_M796_M1.0540.94
38_Y282_T1.0540.94
14_S152_T1.0500.94
110_Y249_M1.0490.94
206_L228_L1.0470.93
101_Q267_N1.0460.93
497_V830_L1.0460.93
19_A43_I1.0430.93
826_A852_V1.0420.93
724_G728_N1.0420.93
220_I225_G1.0390.93
430_E435_K1.0390.93
533_N585_G1.0380.93
569_A575_V1.0360.93
373_W462_R1.0340.93
468_E472_N1.0320.93
64_K69_H1.0320.93
107_L115_I1.0300.93
652_L845_I1.0300.93
654_F849_E1.0290.93
532_I578_I1.0260.93
62_A65_T1.0250.93
536_K540_V1.0240.93
377_S486_A1.0210.93
757_S767_V1.0200.93
148_T161_F1.0170.92
732_T735_E1.0140.92
851_L855_V1.0110.92
62_A106_E1.0080.92
172_G208_K1.0080.92
764_K768_T1.0050.92
259_S262_E1.0020.92
853_P870_F1.0000.92
530_F541_I0.9990.92
406_N420_D0.9990.92
78_G81_K0.9980.92
665_V669_I0.9980.92
656_A868_V0.9970.92
757_S760_E0.9960.92
220_I236_K0.9950.92
309_T313_S0.9950.92
364_W370_Q0.9930.92
49_E286_R0.9930.92
124_E130_V0.9930.92
137_K182_K0.9920.91
692_D739_F0.9920.91
123_A127_G0.9890.91
328_G379_R0.9890.91
442_P447_L0.9890.91
381_V490_G0.9880.91
677_E680_T0.9880.91
789_S792_E0.9870.91
513_A517_E0.9830.91
24_P39_G0.9830.91
741_D745_E0.9820.91
32_V277_D0.9820.91
302_D348_Y0.9780.91
213_V240_L0.9780.91
483_M486_A0.9750.91
498_K646_P0.9730.91
771_M810_K0.9710.91
512_G593_E0.9690.90
105_Y261_L0.9680.90
96_L274_I0.9660.90
223_V226_K0.9650.90
315_I341_I0.9640.90
38_Y42_M0.9600.90
414_V426_V0.9600.90
96_L278_L0.9580.90
134_S246_A0.9580.90
712_V720_I0.9570.90
788_R792_E0.9540.90
691_M698_K0.9520.90
495_T816_A0.9510.90
32_V88_E0.9500.90
514_K584_I0.9490.90
65_T109_Q0.9470.89
814_D859_A0.9460.89
567_K727_Q0.9450.89
738_A741_D0.9440.89
844_E848_L0.9420.89
375_F414_V0.9410.89
649_K842_K0.9400.89
386_W602_D0.9370.89
223_V228_L0.9370.89
511_L592_I0.9370.89
17_Y82_T0.9350.89
503_R643_A0.9330.89
24_P35_N0.9330.89
733_R737_G0.9330.89
334_E379_R0.9330.89
276_K284_L0.9320.89
216_L220_I0.9310.89
212_S218_E0.9310.89
405_I472_N0.9300.89
871_A879_A0.9290.89
502_D505_K0.9280.89
519_E523_H0.9280.89
544_E558_Y0.9280.89
5_K55_H0.9280.89
188_S200_E0.9270.88
376_D380_A0.9270.88
173_L177_Q0.9240.88
366_E392_K0.9230.88
436_G439_R0.9220.88
446_V449_E0.9220.88
428_S431_S0.9190.88
466_V479_E0.9170.88
840_A845_I0.9160.88
181_M204_I0.9160.88
683_M698_K0.9140.88
342_V347_A0.9140.88
382_V494_S0.9130.88
702_T705_M0.9120.88
173_L178_I0.9110.88
210_F220_I0.9110.88
441_V444_E0.9100.88
206_L216_L0.9100.88
147_T250_T0.9090.87
107_L253_P0.9050.87
355_A359_E0.9020.87
44_L102_I0.9020.87
62_A115_I0.9000.87
539_G558_Y0.8990.87
424_H460_S0.8990.87
525_I573_D0.8980.87
219_S223_V0.8980.87
595_L606_V0.8970.87
323_V329_D0.8960.87
105_Y115_I0.8960.87
481_L813_I0.8940.87
516_K520_E0.8930.87
523_H530_F0.8900.86
185_M207_L0.8850.86
454_K458_I0.8830.86
224_S228_L0.8820.86
429_D432_V0.8800.86
764_K767_V0.8800.86
310_D313_S0.8790.86
323_V380_A0.8780.86
716_I720_I0.8770.86
21_F25_L0.8770.86
518_Y577_Y0.8750.85
273_A277_D0.8750.85
473_D768_T0.8720.85
505_K509_E0.8710.85
166_H170_K0.8700.85
177_Q212_S0.8690.85
271_V275_F0.8680.85
195_V231_K0.8680.85
205_K228_L0.8670.85
669_I753_Y0.8660.85
500_D645_V0.8640.85
685_I713_N0.8630.85
436_G442_P0.8620.85
647_S839_E0.8600.84
247_T250_T0.8590.84
704_A707_R0.8590.84
414_V457_A0.8550.84
794_T798_T0.8550.84
23_L39_G0.8540.84
505_K596_L0.8530.84
84_P88_E0.8530.84
827_R839_E0.8510.84
701_V705_M0.8510.84
763_Q781_T0.8500.84
122_S125_K0.8490.84
92_F278_L0.8490.84
779_E787_I0.8470.83
503_R507_M0.8450.83
826_A838_F0.8450.83
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669_I754_M0.5440.51
240_L244_E0.5430.51
323_V375_F0.5430.51
318_S367_N0.5420.51
674_N677_E0.5420.51
414_V461_L0.5420.51
711_A739_F0.5420.51
615_T747_F0.5410.51
654_F872_S0.5400.51
739_F746_S0.5400.51
173_L200_E0.5400.51
5_K126_D0.5400.51
373_W458_I0.5400.51
616_Q798_T0.5390.51
777_I789_S0.5390.51
344_E348_Y0.5390.51
217_L225_G0.5380.50
325_E379_R0.5380.50
377_S606_V0.5380.50
229_K236_K0.5380.50
634_L668_H0.5380.50
55_H259_S0.5370.50
666_L750_V0.5370.50
182_K246_A0.5370.50
826_A840_A0.5370.50
518_Y522_I0.5360.50
429_D442_P0.5360.50
185_M248_I0.5360.50
112_A245_L0.5350.50
429_D441_V0.5350.50
525_I574_I0.5350.50
424_H457_A0.5350.50
332_H600_R0.5350.50
723_Y788_R0.5350.50
293_E296_Q0.5340.50
103_S400_L0.5340.50
364_W372_K0.5340.50
429_D454_K0.5330.50
125_K147_T0.5330.50
435_K439_R0.5320.50
316_L370_Q0.5310.49
323_V413_D0.5310.49
690_A713_N0.5310.49
346_G456_L0.5310.49
775_R800_I0.5300.49
651_W842_K0.5300.49
680_T861_A0.5300.49
434_G442_P0.5300.49
564_V747_F0.5290.49
173_L208_K0.5290.49
57_L105_Y0.5290.49
434_G438_K0.5280.49
775_R798_T0.5280.49
59_A105_Y0.5270.49
611_N614_L0.5270.49
669_I803_S0.5270.49
510_E635_E0.5270.49
665_V807_I0.5260.49
242_S246_A0.5260.49
150_A155_G0.5250.49
402_A417_V0.5240.49
110_Y250_T0.5240.49
285_E289_E0.5230.48
117_G179_I0.5230.48
415_A453_R0.5220.48
365_V375_F0.5220.48
503_R875_S0.5220.48
842_K845_I0.5220.48
690_A709_A0.5210.48
137_K185_M0.5210.48
132_V139_L0.5210.48
707_R721_S0.5200.48
17_Y80_Q0.5200.48
228_L231_K0.5190.48
580_Q584_I0.5190.48
408_G615_T0.5180.48
583_Q747_F0.5180.48
489_L612_Q0.5180.48
751_K758_V0.5180.48
445_D449_E0.5180.48
431_S815_M0.5170.48
333_E600_R0.5170.48
140_T178_I0.5170.48
179_I250_T0.5160.48
544_E547_G0.5150.47
461_L465_L0.5150.47
50_D161_F0.5150.47
137_K171_Y0.5150.47
134_S815_M0.5150.47
17_Y81_K0.5140.47
366_E393_G0.5140.47
24_P152_T0.5130.47
123_A126_D0.5130.47
501_V604_H0.5130.47
231_K754_M0.5130.47
824_L851_L0.5120.47
683_M713_N0.5110.47
13_N17_Y0.5110.47
549_P572_H0.5110.47
675_L683_M0.5110.47
105_Y119_L0.5110.47
381_V486_A0.5100.47
112_A497_V0.5100.47
323_V327_I0.5100.47
195_V235_F0.5100.47
13_N16_A0.5090.47
372_K394_A0.5090.47
696_V700_E0.5090.47
509_E680_T0.5090.47
10_V56_M0.5090.47
20_F25_L0.5090.47
276_K288_G0.5080.47
826_A849_E0.5080.47
91_P106_E0.5080.47
240_L243_K0.5080.47
27_S38_Y0.5080.47
372_K392_K0.5070.46
358_S362_K0.5070.46
187_D589_S0.5070.46
780_L796_M0.5070.46
401_A466_V0.5070.46
54_T128_F0.5060.46
134_S248_I0.5060.46
716_I744_L0.5060.46
451_L455_A0.5050.46
673_E680_T0.5050.46
646_P837_I0.5050.46
769_T802_G0.5050.46
374_V394_A0.5050.46
209_Q215_K0.5040.46
398_T414_V0.5040.46
396_F483_M0.5040.46
717_V790_F0.5040.46
517_E577_Y0.5040.46
19_A26_L0.5040.46
547_G782_S0.5030.46
181_M216_L0.5030.46
28_N278_L0.5030.46
616_Q775_R0.5020.46
764_K774_R0.5020.46
324_V458_I0.5020.46
325_E337_L0.5020.46
41_A278_L0.5020.46
353_D357_E0.5020.46
615_T871_A0.5020.46
433_Y436_G0.5010.46
13_N151_I0.5010.46
605_K839_E0.5010.46
432_V446_V0.5010.46
205_K217_L0.5000.45
490_G494_S0.5000.45
43_I153_R0.5000.45
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
1bgxT 1 0.9284 100 0.253 Contact Map
2kfnA 1 0.6636 100 0.474 Contact Map
4x0qA 1 0.6477 100 0.486 Contact Map
4yfuA 1 0.658 100 0.491 Contact Map
4bwjA 1 0.608 100 0.502 Contact Map
4xvkA 1 0.6568 100 0.504 Contact Map
1x9mA 1 0.6125 100 0.547 Contact Map
3ikmA 1 0.7307 100 0.753 Contact Map
3h7iA 1 0.3057 100 0.781 Contact Map
1exnA 1 0.2909 100 0.781 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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