GREMLIN Database
YOBT - Uncharacterized protein YobT
UniProt: O34910 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 233 (185)
Sequences: 16270 (12312)
Seq/√Len: 905.2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
140_T149_S4.3781.00
31_E58_Q4.0001.00
62_L73_L3.3411.00
136_L153_T3.1661.00
59_H86_M3.1121.00
61_L150_F2.5011.00
152_D155_N2.3971.00
84_K124_Q2.2901.00
89_E127_T2.2851.00
131_T134_S2.2711.00
47_I79_T2.2701.00
137_A148_M2.2501.00
33_T59_H2.1611.00
24_Y209_A2.1541.00
135_L152_D2.1241.00
131_T136_L2.1041.00
86_M124_Q2.1001.00
27_E32_V2.0561.00
156_G206_S2.0201.00
35_I63_T2.0061.00
80_F83_A2.0051.00
189_N192_E1.9841.00
59_H84_K1.9061.00
88_S139_P1.8761.00
157_T209_A1.8651.00
137_A150_F1.8651.00
91_D146_G1.8051.00
31_E56_P1.7631.00
128_G199_L1.7581.00
24_Y159_I1.7571.00
88_S148_M1.7341.00
127_T130_E1.6671.00
49_A53_L1.6411.00
49_A52_Q1.6361.00
35_I159_I1.6291.00
136_L151_L1.6081.00
92_S96_Q1.5401.00
147_S161_G1.4941.00
149_S158_L1.4741.00
31_E59_H1.4681.00
74_D78_Q1.4671.00
32_V55_K1.4661.00
47_I51_N1.4451.00
32_V57_L1.4111.00
51_N79_T1.4031.00
199_L202_D1.3861.00
57_L83_A1.3831.00
126_L148_M1.3811.00
77_A123_H1.3801.00
192_E195_K1.3741.00
87_I91_D1.3671.00
151_L156_G1.3641.00
138_I151_L1.3621.00
151_L158_L1.3611.00
92_S125_L1.3591.00
86_M126_L1.3461.00
75_T79_T1.3361.00
27_E55_K1.3201.00
133_G152_D1.3071.00
33_T61_L1.2871.00
43_Y75_T1.2791.00
34_L57_L1.2601.00
89_E125_L1.2521.00
124_Q130_E1.2421.00
194_I198_Q1.2321.00
133_G155_N1.2321.00
63_T150_F1.2191.00
57_L80_F1.2011.00
43_Y47_I1.2001.00
73_L85_V1.1911.00
43_Y72_S1.1681.00
191_E195_K1.1531.00
140_T196_S1.1291.00
35_I150_F1.1271.00
44_K48_Q1.1211.00
77_A85_V1.1181.00
32_V58_Q1.1181.00
63_T161_G1.1131.00
48_Q51_N1.1121.00
160_A208_L1.1051.00
218_S221_E1.0811.00
60_I83_A1.0641.00
129_G136_L1.0611.00
48_Q52_Q1.0591.00
26_V35_I1.0501.00
37_A60_I1.0451.00
128_G139_P1.0441.00
140_T147_S1.0281.00
138_I199_L1.0211.00
91_D144_T1.0201.00
45_G49_A0.9951.00
75_T78_Q0.9951.00
23_C46_I0.9931.00
156_G204_A0.9911.00
151_L205_P0.9871.00
190_K194_I0.9871.00
144_T147_S0.9851.00
163_A200_L0.9791.00
136_L203_K0.9751.00
134_S154_R0.9731.00
198_Q201_A0.9721.00
120_T123_H0.9691.00
25_L32_V0.9671.00
60_I73_L0.9641.00
149_S163_A0.9631.00
90_R93_F0.9521.00
198_Q202_D0.9511.00
149_S200_L0.9481.00
32_V56_P0.9351.00
135_L150_F0.9341.00
207_C217_R0.9311.00
90_R139_P0.9311.00
47_I80_F0.9301.00
142_G196_S0.9271.00
74_D77_A0.9231.00
33_T135_L0.9191.00
131_T153_T0.9101.00
151_L203_K0.9061.00
89_E92_S0.8941.00
37_A73_L0.8911.00
35_I61_L0.8891.00
28_E133_G0.8811.00
62_L85_V0.8671.00
151_L207_C0.8651.00
158_L203_K0.8541.00
166_L214_K0.8521.00
89_E93_F0.8501.00
126_L130_E0.8411.00
65_A87_I0.8391.00
97_G100_S0.8391.00
34_L37_A0.8251.00
25_L34_L0.8231.00
87_I92_S0.8211.00
60_I85_V0.8151.00
87_I95_L0.8131.00
88_S91_D0.8071.00
27_E49_A0.8041.00
76_L80_F0.8001.00
45_G48_Q0.7951.00
50_V57_L0.7951.00
157_T207_C0.7941.00
140_T163_A0.7901.00
208_L216_L0.7861.00
65_A91_D0.7851.00
61_L148_M0.7791.00
153_T156_G0.7781.00
93_F97_G0.7691.00
138_I149_S0.7681.00
22_N213_G0.7641.00
27_E53_L0.7621.00
197_A201_A0.7621.00
69_H162_D0.7611.00
126_L150_F0.7581.00
42_S45_G0.7561.00
193_A196_S0.7511.00
134_S153_T0.7441.00
28_E31_E0.7321.00
24_Y211_G0.7311.00
186_A189_N0.7311.00
190_K193_A0.7281.00
205_P219_P0.7271.00
44_K47_I0.7241.00
145_P192_E0.7211.00
91_D94_L0.7161.00
126_L137_A0.7161.00
160_A210_V0.7161.00
21_V38_A0.7151.00
72_S75_T0.7121.00
126_L132_I0.7051.00
133_G154_R0.7041.00
113_G116_K0.7031.00
34_L50_V0.7011.00
195_K198_Q0.7011.00
158_L208_L0.6961.00
25_L50_V0.6871.00
163_A193_A0.6861.00
61_L135_L0.6831.00
145_P187_T0.6751.00
152_D159_I0.6711.00
192_E196_S0.6711.00
209_A215_F0.6691.00
210_V213_G0.6691.00
100_S103_Q0.6651.00
99_T102_R0.6641.00
44_K75_T0.6601.00
139_P148_M0.6511.00
64_H162_D0.6501.00
58_Q84_K0.6491.00
94_L145_P0.6481.00
34_L76_L0.6481.00
34_L46_I0.6471.00
93_F96_Q0.6441.00
147_S163_A0.6431.00
161_G211_G0.6411.00
205_P208_L0.6381.00
66_H69_H0.6331.00
127_T139_P0.6321.00
78_Q118_I0.6281.00
23_C38_A0.6271.00
84_K123_H0.6271.00
117_H121_K0.6271.00
141_P196_S0.6251.00
23_C37_A0.6241.00
32_V50_V0.6201.00
28_E32_V0.6181.00
142_G147_S0.6161.00
201_A220_S0.6111.00
59_H124_Q0.6111.00
98_D101_L0.6101.00
26_V152_D0.6091.00
149_S196_S0.6081.00
187_T193_A0.6081.00
152_D157_T0.6071.00
27_E30_N0.6001.00
208_L218_S0.5971.00
46_I54_G0.5961.00
183_P186_A0.5951.00
191_E194_I0.5931.00
163_A196_S0.5931.00
97_G101_L0.5861.00
200_L218_S0.5861.00
159_I209_A0.5861.00
204_A220_S0.5831.00
167_R220_S0.5801.00
76_L79_T0.5801.00
138_I203_K0.5781.00
204_A207_C0.5771.00
62_L70_V0.5761.00
122_P126_L0.5761.00
30_N55_K0.5731.00
96_Q121_K0.5701.00
50_V54_G0.5701.00
129_G132_I0.5671.00
138_I158_L0.5671.00
92_S95_L0.5661.00
65_A146_G0.5621.00
25_L49_A0.5621.00
128_G132_I0.5571.00
193_A197_A0.5571.00
60_I76_L0.5521.00
86_M130_E0.5521.00
28_E33_T0.5491.00
165_Q168_G0.5481.00
129_G199_L0.5481.00
70_V95_L0.5471.00
130_E137_A0.5451.00
65_A70_V0.5441.00
68_D212_H0.5431.00
90_R145_P0.5401.00
30_N54_G0.5371.00
160_A164_F0.5341.00
128_G131_T0.5331.00
65_A94_L0.5321.00
195_K199_L0.5321.00
70_V73_L0.5301.00
175_Q184_A0.5291.00
33_T58_Q0.5281.00
166_L216_L0.5241.00
185_F188_W0.5241.00
26_V33_T0.5241.00
26_V135_L0.5211.00
36_D64_H0.5201.00
51_N54_G0.5201.00
200_L203_K0.5191.00
91_D95_L0.5161.00
73_L77_A0.5161.00
152_D156_G0.5151.00
199_L203_K0.5151.00
66_H142_G0.5151.00
63_T66_H0.5141.00
19_F67_G0.5131.00
139_P199_L0.5131.00
64_H69_H0.5111.00
151_L204_A0.5061.00
16_P21_V0.5041.00
201_A205_P0.5041.00
119_Q122_P0.5011.00
67_G71_G0.5001.00
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2zo4A 1 0.9571 100 0.315 Contact Map
2yheA 3 0.9399 100 0.366 Contact Map
2cfuA 2 0.927 100 0.368 Contact Map
4ad9A 4 0.8584 100 0.372 Contact Map
4nurA 2 0.9399 100 0.376 Contact Map
4pdxA 2 0.9227 100 0.38 Contact Map
2fhxA 2 0.9056 100 0.389 Contact Map
3q6vA 1 0.9099 100 0.395 Contact Map
2vw8A 2 0.9399 100 0.396 Contact Map
3iogA 1 0.9099 100 0.397 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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