YTCA - BACSU - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

YTCA - Putative UDP-glucose 6-dehydrogenase YtcA

UniProt:	O34862	Sequences: MKICVVGAGYVGLTLSAALASIGHDMICTDKDVKKIGQLKKGVIPFYEPGLSDAILRCGNLSFSSEVKSSMEECPVIFIAVGTPPRSDGSADTKALQSVIGDLSEAIRSYKTIITKSTVPPGTNENIAKQLIASGVSKNLFNIVSNPEFLREGNALYDMLHPDKTVIGVQEEDHVSAAIVKSIYKHIDTPFIVTSLAGAELIKYANNFFLAAKISFINEMARICEAYQSDISDISRAIGLDPRIGKHFLQAGIGYGGSCFPKDLQALQFAAQEKNTETFLLRAVQHINDTQLGLYIKKIQSFFETLQGKKAAVLGISFKPNTDDIRNSQAVRLMERLAELGCDVHAYDPEAVLPEHLRQHVTQHSQAFDAIEESDFLFLATEWSEFLAFDWKKAADIMKGRLVIDGRNVLKKELIEACGLICTGVGRP	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	428 (400)
Sequences:	8449 (5087)
Seq/√Len:	254.4

ECOLI - WECC UDG
BACSU - YTCA YWQF TUAD
HALSA - Q9HQQ9 Q9HSW5
SULSO - Q7LXG4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
125_E	197_A	4.953	1.00
33_V	37_G	4.728	1.00
347_Y	386_F	4.236	1.00
299_I	378_F	3.376	1.00
2_K	25_D	3.358	1.00
310_K	343_D	3.346	1.00
321_N	384_S	3.296	1.00
310_K	345_H	3.200	1.00
38_Q	43_V	3.072	1.00
300_Q	340_L	3.056	1.00
66_E	69_S	3.035	1.00
144_V	180_V	2.862	1.00
194_T	233_D	2.680	1.00
299_I	376_F	2.614	1.00
312_A	374_S	2.605	1.00
21_S	57_R	2.504	1.00
293_G	336_R	2.491	1.00
313_V	334_M	2.475	1.00
4_C	74_C	2.472	1.00
170_Q	176_S	2.459	1.00
225_E	298_K	2.413	1.00
195_S	198_G	2.336	1.00
279_F	286_H	2.323	1.00
40_K	63_F	2.310	1.00
37_G	41_K	2.294	1.00
129_K	143_I	2.235	1.00
317_S	351_A	2.229	1.00
157_Y	161_H	2.204	1.00
108_R	111_K	2.187	1.00
333_L	380_A	2.185	1.00
230_D	233_D	2.126	1.00
24_H	186_H	2.122	1.00
25_D	62_S	2.107	1.00
395_A	401_R	2.085	1.00
76_V	183_I	2.078	1.00
33_V	65_S	2.064	1.00
101_G	130_Q	1.997	1.00
8_A	28_C	1.995	1.00
25_D	60_N	1.973	1.00
311_A	342_C	1.972	1.00
67_V	102_D	1.970	1.00
366_Q	369_D	1.939	1.00
345_H	374_S	1.927	1.00
206_N	238_I	1.918	1.00
44_I	55_I	1.897	1.00
208_F	216_F	1.884	1.00
34_K	37_G	1.882	1.00
194_T	202_I	1.868	1.00
371_I	394_A	1.868	1.00
177_A	193_V	1.867	1.00
227_Y	274_K	1.855	1.00
142_N	171_E	1.852	1.00
77_I	111_K	1.830	1.00
379_L	409_V	1.818	1.00
86_R	90_S	1.807	1.00
98_S	101_G	1.790	1.00
390_D	393_K	1.775	1.00
368_F	393_K	1.767	1.00
178_A	182_S	1.739	1.00
201_L	224_C	1.736	1.00
272_Q	282_R	1.722	1.00
212_A	284_V	1.718	1.00
32_D	35_K	1.701	1.00
277_E	282_R	1.699	1.00
110_Y	142_N	1.697	1.00
177_A	181_K	1.696	1.00
312_A	370_A	1.696	1.00
97_Q	101_G	1.632	1.00
17_A	55_I	1.612	1.00
37_G	40_K	1.610	1.00
2_K	73_E	1.603	1.00
97_Q	126_N	1.591	1.00
3_I	183_I	1.583	1.00
181_K	193_V	1.580	1.00
294_L	298_K	1.577	1.00
209_F	213_K	1.558	1.00
384_S	387_L	1.557	1.00
112_T	179_I	1.543	1.00
4_C	77_I	1.541	1.00
30_D	36_I	1.529	1.00
282_R	286_H	1.525	1.00
17_A	61_L	1.496	1.00
336_R	339_E	1.489	1.00
316_I	346_A	1.475	1.00
299_I	404_I	1.475	1.00
345_H	364_H	1.472	1.00
18_A	21_S	1.471	1.00
226_A	276_T	1.465	1.00
222_R	294_L	1.462	1.00
19_L	183_I	1.462	1.00
178_A	192_I	1.457	1.00
38_Q	45_P	1.448	1.00
52_S	56_L	1.430	1.00
39_L	63_F	1.424	1.00
169_V	177_A	1.422	1.00
29_T	67_V	1.421	1.00
76_V	112_T	1.411	1.00
223_I	278_T	1.408	1.00
320_P	382_E	1.403	1.00
36_I	65_S	1.401	1.00
17_A	54_A	1.398	1.00
336_R	340_L	1.391	1.00
209_F	247_H	1.387	1.00
225_E	294_L	1.386	1.00
304_E	309_K	1.385	1.00
337_L	342_C	1.377	1.00
107_I	111_K	1.365	1.00
222_R	291_Q	1.363	1.00
34_K	38_Q	1.361	1.00
97_Q	127_I	1.347	1.00
331_V	335_E	1.344	1.00
53_D	57_R	1.339	1.00
70_S	73_E	1.335	1.00
268_Q	282_R	1.332	1.00
253_I	406_G	1.327	1.00
66_E	70_S	1.325	1.00
62_S	70_S	1.319	1.00
18_A	160_L	1.315	1.00
212_A	216_F	1.297	1.00
36_I	63_F	1.293	1.00
142_N	176_S	1.286	1.00
50_G	53_D	1.280	1.00
296_I	333_L	1.277	1.00
233_D	236_R	1.276	1.00
182_S	185_K	1.262	1.00
350_E	385_E	1.257	1.00
129_K	133_A	1.249	1.00
2_K	27_I	1.238	1.00
21_S	160_L	1.237	1.00
280_L	283_A	1.235	1.00
72_E	108_R	1.234	1.00
94_K	98_S	1.224	1.00
312_A	377_L	1.219	1.00
54_A	156_L	1.215	1.00
310_K	373_E	1.212	1.00
154_N	157_Y	1.212	1.00
298_K	404_I	1.211	1.00
76_V	179_I	1.208	1.00
302_F	404_I	1.203	1.00
217_I	235_S	1.200	1.00
169_V	176_S	1.198	1.00
126_N	130_Q	1.196	1.00
222_R	226_A	1.188	1.00
38_Q	41_K	1.184	1.00
202_I	237_A	1.183	1.00
224_C	231_I	1.178	1.00
40_K	62_S	1.177	1.00
296_I	336_R	1.174	1.00
280_L	287_I	1.163	1.00
27_I	74_C	1.160	1.00
403_V	410_L	1.159	1.00
332_R	335_E	1.154	1.00
311_A	376_F	1.153	1.00
270_A	273_E	1.151	1.00
123_T	127_I	1.150	1.00
205_A	220_M	1.149	1.00
212_A	280_L	1.146	1.00
255_Y	285_Q	1.141	1.00
128_A	132_I	1.135	1.00
146_N	184_Y	1.135	1.00
195_S	233_D	1.129	1.00
375_D	399_K	1.128	1.00
179_I	182_S	1.128	1.00
6_V	99_V	1.125	1.00
27_I	73_E	1.124	1.00
279_F	290_T	1.113	1.00
101_G	105_E	1.111	1.00
172_E	178_A	1.107	1.00
371_I	377_L	1.103	1.00
314_L	389_F	1.103	1.00
293_G	297_K	1.098	1.00
312_A	345_H	1.094	1.00
232_S	250_Q	1.091	1.00
113_I	131_L	1.082	1.00
27_I	62_S	1.080	1.00
39_L	61_L	1.078	1.00
100_I	104_S	1.077	1.00
35_K	45_P	1.075	1.00
343_D	362_T	1.072	1.00
73_E	108_R	1.066	1.00
220_M	231_I	1.066	1.00
232_S	236_R	1.065	1.00
27_I	64_S	1.063	1.00
125_E	129_K	1.061	1.00
110_Y	140_L	1.061	1.00
198_G	229_S	1.059	1.00
6_V	77_I	1.058	1.00
242_P	247_H	1.055	1.00
384_S	388_A	1.053	1.00
335_E	338_A	1.052	1.00
69_S	72_E	1.052	1.00
316_I	356_H	1.049	1.00
21_S	53_D	1.048	1.00
142_N	170_Q	1.045	1.00
334_M	338_A	1.045	1.00
181_K	185_K	1.038	1.00
112_T	144_V	1.038	1.00
84_P	92_D	1.034	1.00
101_G	131_L	1.034	1.00
67_V	106_A	1.031	1.00
8_A	16_S	1.029	1.00
185_K	190_P	1.028	1.00
229_S	234_I	1.023	1.00
158_D	161_H	1.019	1.00
36_I	40_K	1.015	1.00
236_R	246_K	1.013	1.00
115_T	124_N	1.012	1.00
379_L	403_V	1.007	1.00
128_A	170_Q	1.004	1.00
98_S	102_D	1.000	1.00
332_R	336_R	0.994	1.00
354_P	357_L	0.993	1.00
300_Q	342_C	0.991	1.00
299_I	406_G	0.989	1.00
167_I	180_V	0.985	1.00
300_Q	306_L	0.977	1.00
325_I	356_H	0.972	1.00
222_R	290_T	0.969	1.00
16_S	28_C	0.965	1.00
181_K	192_I	0.963	1.00
124_N	196_L	0.958	1.00
379_L	410_L	0.957	1.00
224_C	234_I	0.957	1.00
269_F	273_E	0.956	1.00
198_G	234_I	0.955	1.00
75_P	111_K	0.953	1.00
306_L	342_C	0.952	1.00
3_I	19_L	0.950	1.00
393_K	396_D	0.949	1.00
269_F	272_Q	0.944	1.00
309_K	375_D	0.944	1.00
290_T	293_G	0.943	1.00
253_I	380_A	0.942	1.00
176_S	180_V	0.942	1.00
4_C	29_T	0.940	1.00
112_T	176_S	0.937	1.00
297_K	301_S	0.935	1.00
314_L	377_L	0.933	1.00
292_L	332_R	0.932	1.00
125_E	196_L	0.932	1.00
79_I	103_L	0.931	1.00
302_F	402_L	0.931	1.00
107_I	141_F	0.929	1.00
69_S	73_E	0.929	1.00
110_Y	141_F	0.928	1.00
311_A	378_F	0.927	1.00
102_D	105_E	0.924	1.00
29_T	70_S	0.923	1.00
310_K	374_S	0.922	1.00
335_E	339_E	0.919	1.00
16_S	61_L	0.914	1.00
91_A	120_P	0.912	1.00
223_I	276_T	0.910	1.00
211_A	285_Q	0.900	1.00
43_V	51_L	0.899	1.00
171_E	176_S	0.898	1.00
114_I	180_V	0.894	1.00
316_I	328_S	0.892	1.00
376_F	402_L	0.891	1.00
103_L	113_I	0.890	1.00
8_A	61_L	0.886	1.00
364_H	370_A	0.885	1.00
392_K	396_D	0.881	1.00
278_T	281_L	0.879	1.00
97_Q	130_Q	0.875	1.00
62_S	69_S	0.874	1.00
127_I	131_L	0.871	1.00
64_S	70_S	0.868	1.00
298_K	301_S	0.867	1.00
303_F	309_K	0.866	1.00
330_A	380_A	0.865	1.00
54_A	57_R	0.861	0.99
23_G	186_H	0.861	0.99
18_A	159_M	0.861	0.99
126_N	129_K	0.860	0.99
178_A	193_V	0.859	0.99
100_I	115_T	0.849	0.99
75_P	179_I	0.848	0.99
15_L	159_M	0.847	0.99
109_S	140_L	0.845	0.99
4_C	27_I	0.844	0.99
181_K	190_P	0.841	0.99
314_L	386_F	0.837	0.99
79_I	96_L	0.837	0.99
51_L	55_I	0.835	0.99
107_I	132_I	0.834	0.99
76_V	114_I	0.831	0.99
128_A	196_L	0.831	0.99
364_H	369_D	0.828	0.99
29_T	64_S	0.827	0.99
265_Q	285_Q	0.826	0.99
391_W	410_L	0.824	0.99
55_I	61_L	0.823	0.99
3_I	24_H	0.822	0.99
213_K	249_L	0.817	0.99
31_K	102_D	0.815	0.99
255_Y	264_L	0.814	0.99
308_G	343_D	0.811	0.99
345_H	373_E	0.809	0.99
316_I	325_I	0.806	0.99
75_P	109_S	0.806	0.99
177_A	192_I	0.805	0.99
289_D	332_R	0.803	0.99
299_I	311_A	0.803	0.99
299_I	337_L	0.802	0.99
76_V	180_V	0.801	0.99
295_Y	406_G	0.797	0.99
296_I	340_L	0.794	0.99
369_D	372_E	0.792	0.99
4_C	71_M	0.792	0.99
67_V	105_E	0.787	0.99
338_A	361_V	0.784	0.99
382_E	407_R	0.782	0.99
312_A	371_I	0.779	0.99
239_G	248_F	0.779	0.99
223_I	267_L	0.779	0.99
178_A	181_K	0.776	0.99
268_Q	285_Q	0.775	0.99
328_S	331_V	0.772	0.99
345_H	362_T	0.771	0.99
150_L	159_M	0.769	0.99
320_P	384_S	0.767	0.99
91_A	266_A	0.766	0.99
114_I	183_I	0.766	0.99
27_I	70_S	0.764	0.99
100_I	128_A	0.763	0.99
268_Q	281_L	0.762	0.99
163_D	242_P	0.761	0.99
290_T	297_K	0.761	0.99
338_A	344_V	0.757	0.99
346_A	363_Q	0.755	0.99
116_K	184_Y	0.755	0.99
59_G	62_S	0.753	0.99
136_V	139_N	0.753	0.99
100_I	130_Q	0.750	0.99
325_I	331_V	0.749	0.99
295_Y	404_I	0.749	0.99
352_V	363_Q	0.747	0.99
129_K	132_I	0.743	0.99
79_I	113_I	0.742	0.98
192_I	240_L	0.741	0.98
316_I	334_M	0.740	0.98
100_I	131_L	0.739	0.98
325_I	351_A	0.739	0.98
334_M	346_A	0.737	0.98
5_V	16_S	0.729	0.98
190_P	240_L	0.727	0.98
325_I	355_E	0.721	0.98
314_L	371_I	0.721	0.98
151_R	154_N	0.720	0.98
209_F	249_L	0.716	0.98
109_S	139_N	0.716	0.98
104_S	131_L	0.715	0.98
15_L	19_L	0.714	0.98
367_A	385_E	0.714	0.98
103_L	106_A	0.712	0.98
367_A	371_I	0.711	0.98
104_S	141_F	0.711	0.98
144_V	169_V	0.710	0.98
77_I	103_L	0.707	0.98
382_E	387_L	0.701	0.98
231_I	235_S	0.695	0.98
166_V	181_K	0.693	0.98
226_A	277_E	0.693	0.98
71_M	77_I	0.693	0.98
47_Y	350_E	0.693	0.98
377_L	386_F	0.693	0.98
78_F	183_I	0.692	0.98
213_K	217_I	0.691	0.98
25_D	73_E	0.690	0.98
352_V	356_H	0.688	0.98
366_Q	393_K	0.687	0.98
96_L	100_I	0.686	0.98
268_Q	272_Q	0.684	0.97
208_F	281_L	0.684	0.97
29_T	65_S	0.684	0.97
293_G	332_R	0.683	0.97
362_T	373_E	0.680	0.97
29_T	102_D	0.679	0.97
96_L	123_T	0.678	0.97
35_K	38_Q	0.677	0.97
130_Q	133_A	0.676	0.97
6_V	67_V	0.676	0.97
4_C	70_S	0.674	0.97
338_A	360_H	0.673	0.97
198_G	233_D	0.670	0.97
232_S	408_N	0.669	0.97
18_A	156_L	0.669	0.97
100_I	127_I	0.669	0.97
314_L	379_L	0.668	0.97
356_H	363_Q	0.667	0.97
253_I	295_Y	0.664	0.97
168_G	177_A	0.663	0.97
270_A	274_K	0.663	0.97
15_L	164_K	0.662	0.97
104_S	113_I	0.662	0.97
124_N	145_S	0.656	0.97
5_V	15_L	0.655	0.97
10_Y	326_R	0.654	0.97
353_L	356_H	0.653	0.97
8_A	30_D	0.653	0.97
271_A	278_T	0.653	0.97
181_K	191_F	0.650	0.97
220_M	267_L	0.648	0.96
29_T	99_V	0.648	0.96
289_D	292_L	0.648	0.96
72_E	106_A	0.647	0.96
313_V	378_F	0.645	0.96
35_K	39_L	0.644	0.96
264_L	285_Q	0.643	0.96
116_K	146_N	0.642	0.96
69_S	106_A	0.642	0.96
265_Q	289_D	0.641	0.96
115_T	127_I	0.641	0.96
101_G	133_A	0.640	0.96
359_Q	362_T	0.640	0.96
166_V	202_I	0.639	0.96
373_E	399_K	0.639	0.96
136_V	140_L	0.639	0.96
235_S	239_G	0.638	0.96
169_V	193_V	0.638	0.96
170_Q	196_L	0.637	0.96
272_Q	277_E	0.637	0.96
102_D	106_A	0.636	0.96
349_P	386_F	0.635	0.96
219_E	287_I	0.634	0.96
194_T	198_G	0.634	0.96
303_F	376_F	0.634	0.96
49_P	54_A	0.633	0.96
335_E	357_L	0.632	0.96
389_F	394_A	0.632	0.96
171_E	178_A	0.631	0.96
132_I	141_F	0.627	0.96
118_T	263_D	0.627	0.96
391_W	403_V	0.627	0.96
216_F	220_M	0.626	0.96
121_P	132_I	0.626	0.96
235_S	250_Q	0.624	0.96
166_V	190_P	0.623	0.96
361_V	364_H	0.621	0.96
377_L	394_A	0.621	0.96
23_G	60_N	0.619	0.95
211_A	255_Y	0.618	0.95
303_F	311_A	0.617	0.95
85_P	265_Q	0.616	0.95
31_K	95_A	0.615	0.95
118_T	259_C	0.615	0.95
150_L	155_A	0.614	0.95
297_K	340_L	0.613	0.95
77_I	106_A	0.609	0.95
43_V	52_S	0.608	0.95
223_I	271_A	0.606	0.95
222_R	276_T	0.606	0.95
93_T	97_Q	0.606	0.95
283_A	286_H	0.606	0.95
296_I	300_Q	0.606	0.95
152_E	318_F	0.603	0.95
236_R	239_G	0.603	0.95
314_L	367_A	0.602	0.95
6_V	71_M	0.601	0.95
79_I	115_T	0.600	0.95
235_S	251_A	0.598	0.95
165_T	202_I	0.598	0.95
142_N	179_I	0.597	0.94
367_A	389_F	0.597	0.94
312_A	366_Q	0.596	0.94
303_F	400_G	0.596	0.94
392_K	395_A	0.596	0.94
241_D	244_I	0.595	0.94
351_A	355_E	0.593	0.94
133_A	141_F	0.592	0.94
43_V	56_L	0.591	0.94
201_L	220_M	0.591	0.94
180_V	184_Y	0.590	0.94
298_K	302_F	0.588	0.94
338_A	343_D	0.588	0.94
148_E	259_C	0.588	0.94
135_G	140_L	0.587	0.94
30_D	65_S	0.585	0.94
258_S	262_K	0.585	0.94
86_R	97_Q	0.585	0.94
144_V	167_I	0.585	0.94
303_F	402_L	0.584	0.94
8_A	39_L	0.584	0.94
368_F	371_I	0.583	0.94
217_I	220_M	0.583	0.94
291_Q	294_L	0.581	0.94
357_L	364_H	0.580	0.94
239_G	244_I	0.578	0.93
279_F	283_A	0.578	0.93
207_N	263_D	0.577	0.93
83_T	117_S	0.576	0.93
20_A	60_N	0.576	0.93
292_L	333_L	0.575	0.93
44_I	52_S	0.575	0.93
164_K	206_N	0.575	0.93
205_A	208_F	0.573	0.93
292_L	329_Q	0.573	0.93
71_M	111_K	0.572	0.93
96_L	115_T	0.569	0.93
253_I	333_L	0.569	0.93
50_G	54_A	0.569	0.93
164_K	184_Y	0.565	0.93
253_I	320_P	0.564	0.93
264_L	281_L	0.563	0.93
346_A	352_V	0.562	0.93
74_C	77_I	0.561	0.92
296_I	306_L	0.561	0.92
198_G	202_I	0.561	0.92
51_L	54_A	0.559	0.92
366_Q	370_A	0.557	0.92
390_D	394_A	0.557	0.92
169_V	196_L	0.556	0.92
78_F	184_Y	0.556	0.92
278_T	282_R	0.555	0.92
246_K	250_Q	0.555	0.92
325_I	330_A	0.555	0.92
299_I	306_L	0.553	0.92
24_H	76_V	0.551	0.92
222_R	225_E	0.550	0.92
369_D	373_E	0.550	0.92
303_F	306_L	0.549	0.92
113_I	141_F	0.548	0.92
126_N	270_A	0.548	0.92
81_V	95_A	0.547	0.92
67_V	71_M	0.546	0.91
259_C	262_K	0.546	0.91
116_K	262_K	0.545	0.91
391_W	394_A	0.543	0.91
376_F	404_I	0.543	0.91
36_I	39_L	0.542	0.91
226_A	274_K	0.542	0.91
316_I	330_A	0.542	0.91
223_I	227_Y	0.541	0.91
166_V	177_A	0.541	0.91
232_S	251_A	0.539	0.91
114_I	144_V	0.538	0.91
371_I	374_S	0.537	0.91
21_S	54_A	0.537	0.91
337_L	344_V	0.536	0.91
95_A	99_V	0.536	0.91
367_A	370_A	0.534	0.91
272_Q	279_F	0.533	0.90
116_K	164_K	0.533	0.90
221_A	291_Q	0.531	0.90
209_F	217_I	0.529	0.90
280_L	284_V	0.528	0.90
40_K	43_V	0.527	0.90
279_F	282_R	0.527	0.90
215_S	280_L	0.526	0.90
149_F	206_N	0.526	0.90
316_I	363_Q	0.526	0.90
365_S	369_D	0.526	0.90
139_N	142_N	0.526	0.90
220_M	224_C	0.525	0.90
225_E	291_Q	0.524	0.90
62_S	73_E	0.523	0.90
53_D	56_L	0.523	0.90
285_Q	289_D	0.522	0.90
39_L	45_P	0.522	0.90
152_E	262_K	0.521	0.89
159_M	187_I	0.520	0.89
106_A	111_K	0.520	0.89
97_Q	131_L	0.520	0.89
307_Q	341_G	0.518	0.89
387_L	409_V	0.518	0.89
207_N	259_C	0.518	0.89
90_S	273_E	0.517	0.89
138_K	169_V	0.517	0.89
84_P	327_N	0.517	0.89
281_L	284_V	0.516	0.89
50_G	156_L	0.516	0.89
17_A	21_S	0.515	0.89
302_F	376_F	0.515	0.89
334_M	380_A	0.514	0.89
172_E	177_A	0.513	0.89
395_A	403_V	0.513	0.89
263_D	326_R	0.513	0.89
47_Y	323_D	0.511	0.89
20_A	59_G	0.509	0.88
276_T	287_I	0.509	0.88
132_I	143_I	0.508	0.88
193_V	237_A	0.508	0.88
116_K	152_E	0.508	0.88
167_I	177_A	0.508	0.88
215_S	287_I	0.508	0.88
107_I	136_V	0.507	0.88
255_Y	284_V	0.507	0.88
295_Y	378_F	0.506	0.88
207_N	319_K	0.506	0.88
347_Y	385_E	0.506	0.88
239_G	247_H	0.506	0.88
5_V	19_L	0.505	0.88
265_Q	327_N	0.504	0.88
306_L	309_K	0.504	0.88
105_E	109_S	0.504	0.88
313_V	380_A	0.503	0.88
158_D	162_P	0.501	0.88
208_F	212_A	0.500	0.87
368_F	372_E	0.500	0.87

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2y0cA	4	0.9953	100	0.232	Contact Map
2o3jA	4	0.9883	100	0.25	Contact Map
3gg2A	3	0.979	100	0.251	Contact Map
2q3eA	5	1	100	0.251	Contact Map
3g79A	2	0.9813	100	0.264	Contact Map
3ojoA	2	0.9463	100	0.27	Contact Map
4a7pA	2	0.986	100	0.274	Contact Map
3vtfA	2	0.9696	100	0.291	Contact Map
4xr9A	2	0.9883	100	0.296	Contact Map
1mv8A	2	0.9626	100	0.313	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0119 seconds.