YCEH - BACSU - GREMLIN Contacts

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YCEH - Uncharacterized protein YceH

UniProt:	O34833	Sequences: MTTENQNPLVLDKNEEISQQKADDIRLQLRQEPEVKRLAQQIDVKNQMELLEYGKEPAVEISKFSDRILGMMKTTSVTDSGTMLTQLGKIMDRFDKNDFDEPKGLMAKIFKRGGSMIEKIFKKYQTLGGEIEKIHVEISKYKDEMTKTNYTLDEMYENNIKYYMELEKYVVAGQMKLEEMQSILPSYEEKAASGNQLAQMQLDTLRNGIQALEERVYDLDMARMVALQTAPQIRLLQRGNAKLIGKINSAFIITIPIFKNGIIQAVTVKRQKLVADSMSELDRRTNEMLKRNAENISSQSVEIARMAGRPSIDIETIESSWNTIVSGMQETKQIEEENKRLREDGARRIAQLQDNIKKAALQQ	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	363 (337)
Sequences:	935 (578)
Seq/√Len:	31.5

BACSU - YCEH YAAN

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
294_E	319_S	5.751	1.00
293_A	323_T	5.659	1.00
297_S	326_S	5.202	1.00
318_E	348_R	4.979	1.00
178_E	182_S	4.817	1.00
302_E	305_R	4.443	1.00
333_Q	337_E	4.355	1.00
43_D	46_N	3.757	1.00
272_K	276_D	3.746	1.00
340_R	344_D	3.686	1.00
319_S	323_T	3.480	1.00
294_E	323_T	3.400	1.00
290_K	319_S	3.387	1.00
190_K	198_A	3.311	1.00
174_Q	220_D	3.226	1.00
322_N	326_S	3.095	1.00
173_G	216_V	2.998	1.00
33_P	37_R	2.862	1.00
225_V	312_I	2.852	1.00
184_L	209_I	2.661	1.00
149_N	240_N	2.594	1.00
183_I	186_S	2.520	1.00
27_L	35_V	2.511	1.00
180_M	205_L	2.415	0.99
344_D	347_R	2.400	0.99
59_V	63_K	2.377	0.99
297_S	323_T	2.270	0.99
283_R	287_E	2.267	0.99
309_R	313_D	2.245	0.99
297_S	301_V	2.168	0.99
193_S	198_A	2.127	0.98
351_Q	355_N	2.115	0.98
37_R	40_Q	2.040	0.98
239_G	254_T	2.002	0.97
87_L	250_A	1.986	0.97
202_L	206_R	1.978	0.97
186_S	190_K	1.953	0.97
37_R	41_Q	1.937	0.97
173_G	293_A	1.936	0.97
287_E	290_K	1.911	0.97
152_L	233_I	1.910	0.97
186_S	189_E	1.863	0.96
217_Y	221_M	1.778	0.95
315_E	318_E	1.753	0.95
84_L	243_L	1.752	0.95
221_M	310_P	1.752	0.95
286_N	316_T	1.737	0.94
301_V	333_Q	1.726	0.94
229_T	299_Q	1.716	0.94
355_N	358_K	1.711	0.94
187_Y	205_L	1.663	0.93
284_R	295_N	1.654	0.93
104_G	110_F	1.635	0.92
215_R	224_M	1.632	0.92
279_S	283_R	1.619	0.92
105_L	109_I	1.609	0.92
32_E	36_K	1.590	0.91
298_S	302_E	1.569	0.90
110_F	113_G	1.562	0.90
125_Q	129_G	1.546	0.90
337_E	341_L	1.540	0.90
351_Q	354_D	1.539	0.90
297_S	330_E	1.509	0.89
33_P	36_K	1.503	0.88
283_R	309_R	1.498	0.88
33_P	343_E	1.466	0.87
126_T	129_G	1.450	0.87
232_Q	255_I	1.448	0.86
188_E	206_R	1.441	0.86
177_L	213_E	1.428	0.86
181_Q	209_I	1.427	0.86
341_L	344_D	1.427	0.86
330_E	333_Q	1.426	0.86
214_E	307_A	1.405	0.85
28_Q	31_Q	1.400	0.85
175_M	305_R	1.392	0.84
87_L	244_I	1.392	0.84
152_L	240_N	1.388	0.84
340_R	343_E	1.359	0.83
290_K	323_T	1.349	0.82
80_S	247_I	1.344	0.82
158_N	161_K	1.334	0.82
268_V	271_Q	1.331	0.81
34_E	37_R	1.329	0.81
279_S	306_M	1.328	0.81
290_K	316_T	1.325	0.81
333_Q	336_E	1.324	0.81
211_A	245_G	1.321	0.81
111_K	114_G	1.314	0.81
29_L	38_L	1.312	0.80
60_E	79_D	1.304	0.80
184_L	202_L	1.301	0.80
268_V	284_R	1.298	0.80
157_E	161_K	1.294	0.79
159_N	230_A	1.278	0.79
203_D	229_T	1.275	0.78
31_Q	34_E	1.275	0.78
94_F	252_I	1.273	0.78
312_I	315_E	1.267	0.78
122_K	125_Q	1.254	0.77
104_G	107_A	1.252	0.77
294_E	298_S	1.231	0.76
329_Q	359_A	1.227	0.76
132_E	268_V	1.224	0.76
29_L	32_E	1.222	0.75
247_I	274_V	1.216	0.75
179_E	183_I	1.215	0.75
317_I	327_G	1.200	0.74
38_L	42_I	1.183	0.73
336_E	340_R	1.181	0.73
226_A	229_T	1.178	0.73
268_V	299_Q	1.171	0.72
300_S	304_A	1.156	0.71
267_T	321_W	1.153	0.71
84_L	254_T	1.150	0.71
34_E	38_L	1.148	0.71
195_N	198_A	1.138	0.70
271_Q	284_R	1.131	0.70
113_G	131_I	1.129	0.69
198_A	201_Q	1.119	0.69
291_R	294_E	1.118	0.69
42_I	172_A	1.115	0.68
218_D	334_I	1.114	0.68
228_Q	285_T	1.112	0.68
301_V	330_E	1.112	0.68
36_K	175_M	1.109	0.68
127_L	222_A	1.109	0.68
87_L	243_L	1.107	0.68
177_L	209_I	1.105	0.68
333_Q	351_Q	1.103	0.68
171_V	175_M	1.101	0.67
21_K	24_D	1.100	0.67
276_D	280_E	1.099	0.67
275_A	299_Q	1.087	0.66
72_M	81_G	1.080	0.66
347_R	351_Q	1.061	0.64
55_K	59_V	1.059	0.64
204_T	234_R	1.057	0.64
31_Q	42_I	1.050	0.64
22_A	25_I	1.049	0.64
236_L	280_E	1.034	0.62
294_E	355_N	1.031	0.62
180_M	343_E	1.025	0.62
264_Q	295_N	1.019	0.61
275_A	293_A	1.015	0.61
91_M	243_L	1.014	0.61
148_T	270_R	1.013	0.61
84_L	328_M	1.007	0.60
47_Q	153_D	1.000	0.60
84_L	88_G	0.995	0.59
225_V	254_T	0.985	0.59
286_N	313_D	0.982	0.58
296_I	327_G	0.980	0.58
54_G	69_L	0.975	0.58
154_E	173_G	0.974	0.58
50_L	133_K	0.974	0.58
29_L	42_I	0.973	0.58
355_N	359_A	0.963	0.57
250_A	299_Q	0.955	0.56
354_D	358_K	0.955	0.56
215_R	228_Q	0.955	0.56
118_E	122_K	0.952	0.56
239_G	303_I	0.949	0.56
156_Y	234_R	0.949	0.56
71_M	239_G	0.948	0.56
53_Y	286_N	0.946	0.56
234_R	237_Q	0.943	0.55
272_K	275_A	0.933	0.54
109_I	160_I	0.930	0.54
34_E	42_I	0.921	0.54
218_D	246_K	0.921	0.54
338_N	345_G	0.920	0.53
91_M	250_A	0.920	0.53
124_Y	134_I	0.918	0.53
301_V	350_A	0.914	0.53
253_I	271_Q	0.912	0.53
156_Y	160_I	0.910	0.53
225_V	289_L	0.909	0.53
235_L	300_S	0.909	0.53
24_D	216_V	0.908	0.52
142_K	145_M	0.897	0.52
250_A	274_V	0.897	0.52
131_I	318_E	0.895	0.51
349_I	354_D	0.895	0.51
337_E	340_R	0.894	0.51
101_E	287_E	0.891	0.51
222_A	271_Q	0.891	0.51
25_I	28_Q	0.890	0.51
167_E	223_R	0.888	0.51
35_V	39_A	0.888	0.51
271_Q	299_Q	0.881	0.50
103_K	350_A	0.872	0.50
160_I	227_L	0.872	0.50
169_Y	219_L	0.871	0.49
23_D	29_L	0.869	0.49
154_E	157_E	0.864	0.49
258_F	261_G	0.861	0.49
32_E	179_E	0.859	0.48
326_S	330_E	0.858	0.48
31_Q	38_L	0.854	0.48
231_P	256_P	0.853	0.48
65_S	285_T	0.852	0.48
185_P	188_E	0.848	0.48
184_L	188_E	0.843	0.47
216_V	220_D	0.839	0.47
233_I	236_L	0.833	0.46
175_M	179_E	0.832	0.46
221_M	288_M	0.832	0.46
231_P	246_K	0.826	0.46
317_I	359_A	0.824	0.46
137_E	328_M	0.818	0.45
213_E	343_E	0.817	0.45
102_P	333_Q	0.814	0.45
105_L	108_K	0.810	0.45
222_A	299_Q	0.808	0.44
305_R	337_E	0.807	0.44
245_G	281_L	0.805	0.44
308_G	338_N	0.801	0.44
65_S	169_Y	0.801	0.44
61_I	229_T	0.798	0.44
60_E	201_Q	0.798	0.44
178_E	188_E	0.797	0.43
45_K	201_Q	0.795	0.43
33_P	52_E	0.783	0.42
240_N	268_V	0.781	0.42
235_L	239_G	0.777	0.42
258_F	342_R	0.776	0.42
109_I	358_K	0.776	0.42
87_L	275_A	0.774	0.42
98_D	123_K	0.772	0.41
175_M	215_R	0.771	0.41
52_E	56_E	0.771	0.41
232_Q	278_M	0.770	0.41
60_E	63_K	0.770	0.41
243_L	271_Q	0.768	0.41
133_K	318_E	0.766	0.41
307_A	338_N	0.765	0.41
204_T	261_G	0.763	0.41
82_T	86_Q	0.762	0.41
66_D	259_K	0.761	0.41
84_L	303_I	0.758	0.40
236_L	340_R	0.756	0.40
42_I	157_E	0.750	0.40
272_K	302_E	0.748	0.40
43_D	48_M	0.747	0.40
348_R	351_Q	0.746	0.39
61_I	230_A	0.746	0.39
24_D	175_M	0.744	0.39
116_M	215_R	0.742	0.39
213_E	246_K	0.741	0.39
214_E	345_G	0.741	0.39
25_I	29_L	0.735	0.39
58_A	251_F	0.733	0.38
193_S	216_V	0.733	0.38
246_K	334_I	0.733	0.38
223_R	353_Q	0.728	0.38
83_M	137_E	0.726	0.38
176_K	179_E	0.725	0.38
177_L	216_V	0.724	0.38
143_D	147_K	0.722	0.38
165_E	168_K	0.721	0.38
252_I	359_A	0.721	0.38
59_V	305_R	0.721	0.38
91_M	215_R	0.719	0.37
239_G	242_K	0.718	0.37
39_A	180_M	0.717	0.37
29_L	73_K	0.716	0.37
195_N	243_L	0.714	0.37
43_D	70_G	0.714	0.37
298_S	305_R	0.712	0.37
125_Q	165_E	0.711	0.37
177_L	249_S	0.708	0.37
130_E	329_Q	0.706	0.36
239_G	296_I	0.706	0.36
29_L	190_K	0.705	0.36
71_M	206_R	0.704	0.36
38_L	128_G	0.703	0.36
219_L	233_I	0.696	0.36
50_L	94_F	0.692	0.35
32_E	41_Q	0.692	0.35
54_G	170_V	0.692	0.35
94_F	222_A	0.691	0.35
86_Q	182_S	0.691	0.35
81_G	153_D	0.691	0.35
250_A	281_L	0.690	0.35
175_M	178_E	0.689	0.35
106_M	193_S	0.689	0.35
29_L	198_A	0.689	0.35
334_I	342_R	0.688	0.35
56_E	343_E	0.688	0.35
104_G	108_K	0.687	0.35
200_M	204_T	0.687	0.35
132_E	154_E	0.686	0.35
55_K	91_M	0.685	0.35
44_V	50_L	0.685	0.35
240_N	299_Q	0.684	0.35
68_I	154_E	0.684	0.35
156_Y	230_A	0.684	0.35
335_E	338_N	0.683	0.35
30_R	36_K	0.683	0.35
73_K	295_N	0.678	0.34
43_D	190_K	0.677	0.34
215_R	254_T	0.677	0.34
182_S	185_P	0.676	0.34
101_E	110_F	0.676	0.34
37_R	178_E	0.674	0.34
331_T	335_E	0.673	0.34
42_I	122_K	0.673	0.34
97_N	140_K	0.672	0.34
71_M	152_L	0.671	0.34
163_Y	227_L	0.671	0.34
258_F	321_W	0.671	0.34
148_T	296_I	0.668	0.34
278_M	282_D	0.668	0.34
301_V	305_R	0.668	0.34
266_V	323_T	0.665	0.33
97_N	107_A	0.664	0.33
92_D	326_S	0.662	0.33
118_E	349_I	0.662	0.33
70_G	189_E	0.661	0.33
256_P	342_R	0.660	0.33
260_N	282_D	0.659	0.33
152_L	237_Q	0.658	0.33
64_F	230_A	0.658	0.33
237_Q	256_P	0.658	0.33
145_M	148_T	0.657	0.33
318_E	322_N	0.657	0.33
145_M	247_I	0.657	0.33
242_K	275_A	0.656	0.33
310_P	315_E	0.654	0.33
33_P	106_M	0.654	0.33
61_I	159_N	0.652	0.32
145_M	274_V	0.650	0.32
214_E	335_E	0.650	0.32
199_Q	356_I	0.647	0.32
268_V	285_T	0.647	0.32
94_F	249_S	0.647	0.32
287_E	291_R	0.646	0.32
29_L	161_K	0.645	0.32
159_N	226_A	0.644	0.32
81_G	237_Q	0.642	0.32
219_L	237_Q	0.641	0.32
247_I	250_A	0.640	0.32
48_M	73_K	0.639	0.32
35_V	149_N	0.638	0.31
341_L	346_A	0.636	0.31
138_I	228_Q	0.634	0.31
268_V	295_N	0.633	0.31
276_D	326_S	0.633	0.31
30_R	38_L	0.629	0.31
228_Q	243_L	0.629	0.31
90_I	94_F	0.628	0.31
87_L	299_Q	0.628	0.31
67_R	129_G	0.627	0.31
185_P	189_E	0.624	0.30
234_R	338_N	0.618	0.30
144_E	216_V	0.618	0.30
109_I	117_I	0.617	0.30
223_R	227_L	0.617	0.30
336_E	343_E	0.616	0.30
180_M	209_I	0.615	0.30
240_N	284_R	0.613	0.30
256_P	334_I	0.610	0.30
275_A	323_T	0.608	0.29
268_V	296_I	0.608	0.29
68_I	263_I	0.605	0.29
97_N	100_D	0.605	0.29
76_S	168_K	0.605	0.29
149_N	300_S	0.605	0.29
25_I	35_V	0.604	0.29
116_M	119_K	0.603	0.29
30_R	40_Q	0.603	0.29
222_A	229_T	0.603	0.29
213_E	342_R	0.602	0.29
276_D	344_D	0.600	0.29
239_G	300_S	0.600	0.29
95_D	236_L	0.600	0.29
40_Q	287_E	0.599	0.29
223_R	237_Q	0.598	0.29
250_A	295_N	0.597	0.29
282_D	306_M	0.596	0.29
243_L	250_A	0.596	0.29
259_K	346_A	0.595	0.29
240_N	271_Q	0.595	0.29
31_Q	168_K	0.594	0.28
102_P	107_A	0.593	0.28
287_E	315_E	0.593	0.28
120_I	323_T	0.592	0.28
224_M	352_L	0.592	0.28
85_T	89_K	0.592	0.28
148_T	225_V	0.591	0.28
82_T	89_K	0.589	0.28
230_A	352_L	0.589	0.28
21_K	351_Q	0.587	0.28
206_R	336_E	0.586	0.28
349_I	352_L	0.585	0.28
29_L	33_P	0.584	0.28
51_L	134_I	0.584	0.28
141_Y	320_S	0.583	0.28
149_N	268_V	0.583	0.28
137_E	173_G	0.582	0.28
135_H	251_F	0.582	0.28
218_D	228_Q	0.582	0.28
35_V	76_S	0.581	0.28
292_N	296_I	0.580	0.28
60_E	70_G	0.579	0.27
124_Y	131_I	0.576	0.27
73_K	154_E	0.575	0.27
27_L	32_E	0.574	0.27
189_E	351_Q	0.573	0.27
86_Q	140_K	0.572	0.27
26_R	102_P	0.570	0.27
37_R	355_N	0.570	0.27
246_K	289_L	0.569	0.27
83_M	131_I	0.568	0.27
29_L	35_V	0.566	0.27
139_S	142_K	0.566	0.27
289_L	292_N	0.566	0.27
33_P	40_Q	0.564	0.26
120_I	262_I	0.562	0.26
123_K	240_N	0.561	0.26
84_L	228_Q	0.560	0.26
236_L	330_E	0.558	0.26
112_R	119_K	0.558	0.26
58_A	148_T	0.557	0.26
45_K	105_L	0.556	0.26
334_I	353_Q	0.556	0.26
178_E	186_S	0.555	0.26
107_A	110_F	0.554	0.26
342_R	345_G	0.551	0.26
182_S	186_S	0.551	0.26
73_K	337_E	0.550	0.26
138_I	243_L	0.549	0.26
161_K	165_E	0.549	0.26
90_I	281_L	0.548	0.25
38_L	271_Q	0.547	0.25
275_A	283_R	0.547	0.25
220_D	232_Q	0.547	0.25
344_D	348_R	0.546	0.25
128_G	271_Q	0.542	0.25
250_A	280_E	0.542	0.25
21_K	25_I	0.542	0.25
92_D	283_R	0.541	0.25
167_E	171_V	0.540	0.25
85_T	88_G	0.539	0.25
57_P	174_Q	0.539	0.25
78_T	211_A	0.539	0.25
26_R	40_Q	0.536	0.25
278_M	281_L	0.536	0.25
261_G	292_N	0.535	0.25
78_T	81_G	0.535	0.25
222_A	247_I	0.534	0.25
293_A	298_S	0.534	0.25
261_G	296_I	0.533	0.25
110_F	114_G	0.533	0.25
145_M	240_N	0.532	0.25
237_Q	334_I	0.531	0.24
33_P	354_D	0.531	0.24
50_L	210_Q	0.530	0.24
109_I	357_K	0.530	0.24
224_M	227_L	0.529	0.24
159_N	219_L	0.529	0.24
26_R	140_K	0.529	0.24
215_R	240_N	0.528	0.24
106_M	205_L	0.527	0.24
24_D	37_R	0.526	0.24
97_N	318_E	0.526	0.24
217_Y	247_I	0.526	0.24
296_I	308_G	0.524	0.24
253_I	321_W	0.523	0.24
35_V	300_S	0.522	0.24
246_K	256_P	0.521	0.24
150_Y	194_G	0.520	0.24
40_Q	82_T	0.519	0.24
213_E	258_F	0.518	0.24
169_Y	172_A	0.517	0.24
42_I	110_F	0.517	0.24
21_K	354_D	0.515	0.24
218_D	285_T	0.515	0.24
300_S	316_T	0.515	0.24
96_K	224_M	0.514	0.23
129_G	133_K	0.513	0.23
35_V	41_Q	0.513	0.23
326_S	333_Q	0.511	0.23
239_G	271_Q	0.511	0.23
33_P	178_E	0.511	0.23
258_F	338_N	0.510	0.23
40_Q	326_S	0.509	0.23
154_E	303_I	0.509	0.23
57_P	203_D	0.509	0.23
205_L	322_N	0.508	0.23
33_P	161_K	0.508	0.23
78_T	134_I	0.508	0.23
37_R	201_Q	0.507	0.23
32_E	39_A	0.507	0.23
45_K	350_A	0.507	0.23
228_Q	296_I	0.505	0.23
87_L	284_R	0.505	0.23
94_F	262_I	0.505	0.23
254_T	262_I	0.504	0.23
234_R	353_Q	0.504	0.23
50_L	106_M	0.502	0.23
44_V	343_E	0.502	0.23
264_Q	268_V	0.501	0.23
205_L	239_G	0.501	0.23
322_N	355_N	0.500	0.23

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3tulA	4	0.3719	59.1	0.955	Contact Map
2a01A	1	0.6253	40.9	0.96	Contact Map
4uxvA	1	0.8871	39.8	0.96	Contact Map
3vkgA	2	0.7631	38	0.961	Contact Map
4uy3A	1	0.5262	34.2	0.962	Contact Map
1ykhB	1	0.281	28.9	0.963	Contact Map
1c1gA	2	0.7218	28.8	0.963	Contact Map
3wuqA	1	0.4821	22	0.965	Contact Map
4cqiA	1	0.2837	18.4	0.966	Contact Map
1uixA	2	0.1901	17.3	0.967	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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