PKSC - BACSU - GREMLIN Contacts

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PKSC - Polyketide biosynthesis malonyl CoA-acyl carrier protein transacylase PksC

UniProt:	O34825	Sequences: MITYVFPGQGSQKQGMGSGLFDEFKELTDQADEILGYSIKRLCLENPYSNLNKTQFTQPALYVVNALSYLKKIRDEEVKPDFVAGHSLGEYNALFAAEAFDFETGLQLVRKRGELMSLISNGGMAAVMGLNEEQVAKALKEYHLHDVDIANVNAPYQIVISGKKDEIEKAASLFETMTEVTMVLPLNVSGAFHSRYMNKAKEEFEEFLHAFYFSPPSIPVISNVYAKPYTYEFMKQTLADQINHSVKWTDSISYLMKKGHMEFEEVGPGNVLTGLIHRIKKDAEAMPR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	288 (273)
Sequences:	15423 (11451)
Seq/√Len:	693.1

ECOLI - FABD
BACSU - PKSC PKSE PKSD FABD

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
148_D	195_R	4.022	1.00
247_K	250_D	3.385	1.00
125_A	171_A	3.171	1.00
168_E	185_P	2.600	1.00
6_F	70_L	2.551	1.00
71_K	74_R	2.541	1.00
32_D	38_S	2.541	1.00
101_D	104_T	2.475	1.00
118_L	203_E	2.467	1.00
240_D	244_H	2.441	1.00
131_N	134_Q	2.373	1.00
249_T	253_S	2.332	1.00
111_K	114_E	2.307	1.00
138_A	177_M	2.201	1.00
132_E	136_A	2.194	1.00
198_N	243_N	2.180	1.00
205_E	236_Q	2.152	1.00
70_L	96_A	2.114	1.00
62_Y	105_G	2.054	1.00
3_T	260_H	2.023	1.00
74_R	79_K	1.951	1.00
161_S	194_S	1.931	1.00
160_I	170_A	1.922	1.00
41_R	45_E	1.904	1.00
163_K	196_Y	1.875	1.00
21_F	29_D	1.837	1.00
223_N	251_S	1.830	1.00
171_A	185_P	1.814	1.00
55_Q	117_S	1.804	1.00
31_A	102_F	1.787	1.00
146_D	163_K	1.776	1.00
28_T	63_V	1.775	1.00
5_V	276_I	1.772	1.00
123_G	167_I	1.767	1.00
99_A	216_P	1.755	1.00
25_K	29_D	1.721	1.00
256_M	280_K	1.716	1.00
205_E	239_A	1.710	1.00
236_Q	240_D	1.708	1.00
164_K	185_P	1.705	1.00
27_L	30_Q	1.698	1.00
82_F	260_H	1.687	1.00
53_K	117_S	1.686	1.00
30_Q	103_E	1.677	1.00
147_V	170_A	1.674	1.00
173_L	177_M	1.666	1.00
163_K	166_E	1.643	1.00
227_K	254_Y	1.639	1.00
95_F	105_G	1.636	1.00
27_L	71_K	1.616	1.00
111_K	207_F	1.611	1.00
171_A	175_E	1.594	1.00
164_K	168_E	1.591	1.00
84_A	251_S	1.588	1.00
65_N	92_N	1.582	1.00
3_T	255_L	1.568	1.00
123_G	164_K	1.561	1.00
221_I	228_P	1.554	1.00
138_A	174_F	1.554	1.00
221_I	254_Y	1.551	1.00
171_A	183_V	1.548	1.00
28_T	43_C	1.543	1.00
108_L	208_L	1.527	1.00
134_Q	137_K	1.520	1.00
12_Q	16_M	1.475	1.00
67_L	95_F	1.460	1.00
150_A	161_S	1.458	1.00
254_Y	258_K	1.454	1.00
132_E	247_K	1.450	1.00
34_I	106_L	1.441	1.00
252_I	276_I	1.438	1.00
125_A	167_I	1.433	1.00
4_Y	80_P	1.425	1.00
17_G	64_V	1.421	1.00
208_L	213_F	1.407	1.00
146_D	166_E	1.406	1.00
40_K	44_L	1.403	1.00
221_I	258_K	1.392	1.00
141_E	173_L	1.389	1.00
38_S	41_R	1.384	1.00
83_V	218_I	1.376	1.00
18_S	22_D	1.369	1.00
110_R	114_E	1.359	1.00
205_E	209_H	1.347	1.00
203_E	206_E	1.347	1.00
127_V	135_V	1.317	1.00
28_T	68_S	1.313	1.00
168_E	172_S	1.302	1.00
6_F	96_A	1.296	1.00
84_A	255_L	1.291	1.00
132_E	152_V	1.282	1.00
136_A	140_K	1.280	1.00
152_V	249_T	1.254	1.00
32_D	40_K	1.252	1.00
130_L	135_V	1.247	1.00
34_I	103_E	1.245	1.00
219_P	228_P	1.230	1.00
201_K	205_E	1.222	1.00
134_Q	177_M	1.217	1.00
168_E	171_A	1.216	1.00
142_Y	173_L	1.212	1.00
252_I	279_I	1.201	1.00
123_G	185_P	1.189	1.00
152_V	158_I	1.185	1.00
221_I	251_S	1.184	1.00
82_F	255_L	1.183	1.00
154_A	275_L	1.153	1.00
35_L	110_R	1.148	1.00
206_E	209_H	1.148	1.00
50_N	53_K	1.144	1.00
229_Y	233_F	1.143	1.00
263_F	276_I	1.135	1.00
201_K	243_N	1.133	1.00
111_K	115_L	1.129	1.00
30_Q	71_K	1.125	1.00
5_V	84_A	1.109	1.00
203_E	207_F	1.109	1.00
48_Y	52_N	1.109	1.00
4_Y	266_V	1.100	1.00
215_P	231_Y	1.098	1.00
172_S	175_E	1.094	1.00
198_N	201_K	1.093	1.00
115_L	203_E	1.080	1.00
173_L	176_T	1.072	1.00
172_S	176_T	1.069	1.00
115_L	200_A	1.063	1.00
114_E	118_L	1.062	1.00
207_F	210_A	1.061	1.00
174_F	181_T	1.058	1.00
201_K	239_A	1.058	1.00
125_A	183_V	1.056	1.00
86_H	153_N	1.055	1.00
149_I	152_V	1.054	1.00
55_Q	113_G	1.053	1.00
50_N	56_F	1.052	1.00
18_S	44_L	1.049	1.00
127_V	174_F	1.044	1.00
31_A	63_V	1.043	1.00
200_A	242_I	1.041	1.00
42_L	45_E	1.041	1.00
26_E	30_Q	1.033	1.00
138_A	173_L	1.033	1.00
129_G	182_M	1.033	1.00
135_V	158_I	1.033	1.00
127_V	160_I	1.032	1.00
204_F	242_I	1.029	1.00
21_F	44_L	1.028	1.00
152_V	245_S	1.020	1.00
26_E	29_D	1.020	1.00
148_D	194_S	1.005	1.00
72_K	76_E	1.002	1.00
115_L	207_F	1.001	1.00
29_D	40_K	0.997	1.00
83_V	220_V	0.997	1.00
27_L	68_S	0.996	1.00
5_V	263_F	0.991	1.00
223_N	241_Q	0.990	1.00
149_I	158_I	0.988	1.00
228_P	254_Y	0.984	1.00
67_L	92_N	0.983	1.00
152_V	250_D	0.978	1.00
121_N	164_K	0.975	1.00
152_V	247_K	0.974	1.00
7_P	65_N	0.969	1.00
15_G	18_S	0.967	1.00
137_K	141_E	0.967	1.00
91_Y	109_V	0.967	1.00
29_D	32_D	0.967	1.00
4_Y	78_V	0.964	1.00
169_K	173_L	0.963	1.00
137_K	140_K	0.959	1.00
73_I	266_V	0.955	1.00
94_L	238_L	0.954	1.00
4_Y	70_L	0.948	1.00
169_K	172_S	0.946	1.00
70_L	74_R	0.945	1.00
3_T	263_F	0.945	1.00
31_A	106_L	0.943	1.00
156_Y	278_R	0.939	1.00
167_I	185_P	0.935	1.00
83_V	96_A	0.934	1.00
27_L	31_A	0.930	1.00
107_Q	210_A	0.930	1.00
88_L	109_V	0.926	1.00
142_Y	169_K	0.926	1.00
138_A	170_A	0.925	1.00
82_F	221_I	0.913	1.00
202_E	205_E	0.905	1.00
254_Y	257_K	0.902	1.00
72_K	75_D	0.896	1.00
19_G	23_E	0.893	1.00
224_V	244_H	0.892	1.00
256_M	263_F	0.888	1.00
220_V	234_M	0.882	1.00
104_T	107_Q	0.882	1.00
35_L	106_L	0.876	1.00
130_L	181_T	0.872	1.00
202_E	206_E	0.872	1.00
154_A	278_R	0.871	1.00
55_Q	114_E	0.868	1.00
147_V	166_E	0.867	1.00
141_E	177_M	0.863	1.00
82_F	258_K	0.862	1.00
71_K	95_F	0.860	1.00
125_A	185_P	0.858	1.00
253_S	257_K	0.857	1.00
198_N	239_A	0.857	1.00
133_E	136_A	0.852	1.00
52_N	187_N	0.846	1.00
132_E	158_I	0.835	1.00
62_Y	109_V	0.834	1.00
29_D	33_E	0.834	1.00
62_Y	95_F	0.832	1.00
62_Y	67_L	0.825	1.00
24_F	27_L	0.821	1.00
166_E	169_K	0.818	1.00
230_T	233_F	0.815	1.00
135_V	160_I	0.810	1.00
155_P	279_I	0.807	1.00
256_M	261_M	0.807	1.00
3_T	82_F	0.801	1.00
209_H	235_K	0.800	1.00
24_F	68_S	0.800	1.00
49_S	52_N	0.796	1.00
226_A	251_S	0.793	1.00
37_Y	56_F	0.793	1.00
129_G	156_Y	0.790	1.00
130_L	134_Q	0.789	1.00
198_N	202_E	0.783	1.00
30_Q	34_I	0.776	1.00
24_F	64_V	0.773	1.00
250_D	253_S	0.772	1.00
248_W	276_I	0.770	1.00
3_T	261_M	0.767	1.00
229_Y	234_M	0.766	1.00
90_E	223_N	0.766	1.00
22_D	44_L	0.764	1.00
109_V	113_G	0.763	1.00
54_T	192_F	0.761	1.00
145_H	163_K	0.752	1.00
226_A	250_D	0.750	1.00
178_T	181_T	0.748	1.00
21_F	25_K	0.747	1.00
125_A	160_I	0.744	1.00
188_V	192_F	0.737	1.00
100_F	213_F	0.731	1.00
108_L	211_F	0.730	1.00
99_A	213_F	0.729	1.00
17_G	24_F	0.726	1.00
175_E	183_V	0.720	1.00
170_A	174_F	0.720	1.00
252_I	263_F	0.719	1.00
253_S	279_I	0.717	1.00
84_A	248_W	0.713	1.00
100_F	108_L	0.711	1.00
61_L	65_N	0.711	1.00
11_S	61_L	0.709	1.00
43_C	64_V	0.708	1.00
256_M	281_K	0.708	1.00
249_T	279_I	0.707	1.00
46_N	50_N	0.704	1.00
107_Q	111_K	0.704	1.00
79_K	217_S	0.703	1.00
135_V	139_L	0.703	1.00
98_E	217_S	0.700	1.00
28_T	32_D	0.700	1.00
71_K	102_F	0.697	1.00
55_Q	59_P	0.693	1.00
104_T	211_F	0.692	1.00
134_Q	181_T	0.692	1.00
39_I	63_V	0.690	1.00
134_Q	156_Y	0.690	1.00
32_D	39_I	0.688	1.00
132_E	250_D	0.686	1.00
270_N	274_G	0.685	1.00
221_I	255_L	0.684	1.00
67_L	71_K	0.683	1.00
9_Q	188_V	0.682	1.00
220_V	229_Y	0.681	1.00
107_Q	207_F	0.680	1.00
28_T	40_K	0.679	1.00
225_Y	240_D	0.678	1.00
104_T	214_S	0.678	1.00
25_K	28_T	0.675	1.00
138_A	142_Y	0.672	1.00
197_M	242_I	0.672	1.00
118_L	200_A	0.670	1.00
274_G	277_H	0.670	1.00
222_S	237_T	0.666	1.00
129_G	181_T	0.663	1.00
69_Y	266_V	0.661	1.00
62_Y	106_L	0.658	1.00
206_E	210_A	0.656	1.00
225_Y	237_T	0.655	1.00
101_D	214_S	0.652	1.00
127_V	130_L	0.649	1.00
127_V	183_V	0.649	1.00
253_S	256_M	0.644	1.00
57_T	61_L	0.644	1.00
45_E	49_S	0.641	1.00
95_F	102_F	0.639	1.00
192_F	242_I	0.636	1.00
131_N	135_V	0.635	1.00
116_M	197_M	0.635	1.00
42_L	56_F	0.633	1.00
91_Y	208_L	0.629	1.00
133_E	137_K	0.628	1.00
63_V	106_L	0.627	1.00
52_N	57_T	0.624	1.00
147_V	160_I	0.616	1.00
35_L	59_P	0.615	1.00
91_Y	211_F	0.615	1.00
41_R	50_N	0.614	1.00
68_S	72_K	0.614	1.00
131_N	156_Y	0.610	1.00
102_F	106_L	0.607	1.00
88_L	192_F	0.603	1.00
119_I	197_M	0.601	1.00
225_Y	229_Y	0.601	1.00
200_A	204_F	0.597	1.00
196_Y	199_K	0.594	1.00
137_K	177_M	0.594	1.00
21_F	28_T	0.593	1.00
165_D	168_E	0.593	1.00
7_P	267_G	0.593	1.00
34_I	107_Q	0.593	1.00
124_M	188_V	0.593	1.00
255_L	260_H	0.592	1.00
67_L	96_A	0.589	1.00
215_P	232_E	0.588	1.00
95_F	100_F	0.588	1.00
65_N	266_V	0.586	1.00
9_Q	116_M	0.583	1.00
70_L	73_I	0.582	1.00
27_L	102_F	0.580	1.00
142_Y	146_D	0.580	1.00
146_D	195_R	0.579	1.00
139_L	149_I	0.578	1.00
136_A	152_V	0.575	1.00
213_F	235_K	0.572	1.00
58_Q	112_R	0.571	1.00
155_P	249_T	0.570	1.00
90_E	222_S	0.566	1.00
184_L	187_N	0.565	1.00
30_Q	33_E	0.562	1.00
195_R	198_N	0.561	1.00
82_F	228_P	0.561	1.00
30_Q	102_F	0.561	1.00
121_N	163_K	0.559	1.00
86_H	246_V	0.558	1.00
199_K	202_E	0.558	1.00
146_D	169_K	0.556	1.00
115_L	118_L	0.555	1.00
74_R	217_S	0.554	1.00
56_F	59_P	0.552	1.00
239_A	243_N	0.552	1.00
67_L	102_F	0.550	1.00
108_L	204_F	0.549	1.00
135_V	174_F	0.547	1.00
9_Q	58_Q	0.546	1.00
100_F	105_G	0.545	1.00
119_I	200_A	0.544	1.00
222_S	229_Y	0.543	1.00
222_S	225_Y	0.543	1.00
116_M	190_G	0.543	1.00
134_Q	138_A	0.540	1.00
251_S	254_Y	0.538	1.00
191_A	196_Y	0.538	1.00
62_Y	92_N	0.538	1.00
116_M	119_I	0.537	1.00
31_A	34_I	0.537	1.00
42_L	50_N	0.537	1.00
141_E	145_H	0.535	1.00
265_E	272_L	0.531	1.00
94_L	99_A	0.530	1.00
80_P	83_V	0.529	1.00
92_N	95_F	0.529	1.00
7_P	269_G	0.529	1.00
124_M	161_S	0.526	1.00
142_Y	145_H	0.526	1.00
224_V	240_D	0.526	1.00
160_I	167_I	0.525	1.00
59_P	113_G	0.525	1.00
4_Y	264_E	0.524	1.00
100_F	104_T	0.523	1.00
215_P	230_T	0.523	1.00
191_A	197_M	0.523	1.00
21_F	40_K	0.520	1.00
27_L	67_L	0.518	1.00
132_E	149_I	0.517	0.99
54_T	58_Q	0.516	0.99
228_P	258_K	0.516	0.99
227_K	250_D	0.514	0.99
39_I	60_A	0.512	0.99
151_N	159_V	0.511	0.99
24_F	72_K	0.510	0.99
97_A	220_V	0.509	0.99
62_Y	102_F	0.509	0.99
67_L	106_L	0.506	0.99
142_Y	170_A	0.506	0.99
192_F	197_M	0.505	0.99
200_A	203_E	0.504	0.99
126_A	157_Q	0.503	0.99
80_P	218_I	0.502	0.99
28_T	31_A	0.502	0.99
122_G	191_A	0.502	0.99
123_G	168_E	0.501	0.99
7_P	266_V	0.500	0.99
101_D	212_Y	0.500	0.99
207_F	211_F	0.500	0.99

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3g87A	1	0.9826	100	0.042	Contact Map
3sbmA	1	0.9757	100	0.061	Contact Map
3ptwA	1	0.9896	100	0.072	Contact Map
2cuyA	2	0.9792	100	0.075	Contact Map
3qatA	2	0.9896	100	0.081	Contact Map
4rr5A	1	0.9688	100	0.081	Contact Map
3im8A	1	0.9861	100	0.081	Contact Map
3k89A	1	0.9896	100	0.082	Contact Map
3tqeA	1	0.9896	100	0.086	Contact Map
3ezoA	1	0.9896	100	0.087	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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