GREMLIN Database
YTFJ - Uncharacterized spore protein YtfJ
UniProt: O34806 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 151 (132)
Sequences: 429 (295)
Seq/√Len: 25.6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
13_A51_A4.3871.00
54_S78_G3.3011.00
9_L81_S2.8241.00
41_T122_T2.5930.99
56_F78_G2.5140.99
50_A82_G2.3600.98
17_L41_T2.3050.98
26_I47_F2.2670.98
47_F91_A2.2030.97
126_I131_K2.1890.97
112_I121_Q2.0700.96
17_L20_M2.0230.96
27_I94_I2.0010.95
10_M13_A1.9640.95
91_A105_L1.9560.95
69_E72_E1.7690.91
5_P10_M1.6930.89
44_K101_R1.6870.89
6_I26_I1.6230.87
41_T104_H1.5760.85
87_I114_K1.5620.85
6_I9_L1.5150.83
83_G105_L1.5050.82
78_G93_L1.4990.82
44_K91_A1.4860.82
7_Q26_I1.4640.81
50_A56_F1.4450.80
14_M81_S1.4430.80
104_H122_T1.4130.78
40_L105_L1.4110.78
44_K87_I1.4110.78
41_T103_L1.3980.77
115_I130_F1.3860.77
14_M31_V1.3730.76
136_N139_Q1.3590.75
42_V95_V1.3580.75
55_E121_Q1.3280.74
104_H114_K1.3190.73
50_A76_P1.3140.73
31_V36_G1.3100.73
87_I125_R1.2970.72
119_A124_E1.2930.72
56_F76_P1.2690.70
21_I107_E1.2690.70
9_L78_G1.2560.69
60_P100_I1.2460.69
21_I98_T1.2450.69
33_T114_K1.2400.68
42_V94_I1.1990.66
44_K60_P1.1960.65
30_P56_F1.1940.65
6_I95_V1.1890.65
88_T98_T1.1860.65
39_I50_A1.1810.64
14_M20_M1.1600.63
6_I12_T1.1600.63
3_D7_Q1.1550.63
32_E55_E1.1540.63
42_V105_L1.1450.62
13_A125_R1.1350.61
10_M14_M1.1340.61
12_T16_N1.1280.61
40_L132_K1.1250.61
38_V96_G1.1160.60
73_Q123_L1.0850.58
26_I43_S1.0630.56
114_K117_D1.0540.56
83_G90_I1.0480.55
111_L116_L1.0470.55
134_N139_Q1.0020.52
60_P71_R0.9870.51
115_I133_N0.9860.51
122_T130_F0.9810.50
31_V40_L0.9620.49
16_N83_G0.9610.49
42_V104_H0.9600.49
4_H10_M0.9420.47
21_I115_I0.9410.47
115_I129_M0.9210.46
39_I82_G0.9210.46
38_V136_N0.9090.45
61_A134_N0.9070.45
101_R112_I0.9060.45
55_E101_R0.9040.45
13_A90_I0.9030.44
12_T38_V0.9020.44
69_E118_A0.9000.44
111_L119_A0.8820.43
104_H110_H0.8700.42
14_M25_T0.8660.42
135_K139_Q0.8650.42
11_K15_E0.8590.41
55_E76_P0.8500.41
123_L139_Q0.8470.40
16_N47_F0.8460.40
21_I122_T0.8320.39
72_E135_K0.8240.39
91_A102_M0.8110.38
105_L110_H0.8040.37
50_A54_S0.7940.37
9_L86_S0.7890.36
15_E18_K0.7830.36
46_G87_I0.7830.36
17_L104_H0.7830.36
20_M31_V0.7830.36
135_K138_S0.7790.36
39_I90_I0.7750.35
20_M45_V0.7700.35
136_N140_G0.7650.35
133_N138_S0.7650.35
26_I55_E0.7600.34
126_I129_M0.7590.34
30_P38_V0.7490.34
2_A7_Q0.7490.34
96_G99_G0.7460.34
34_P117_D0.7380.33
13_A111_L0.7370.33
61_A124_E0.7350.33
24_N35_D0.7320.33
91_A110_H0.7300.33
23_V76_P0.7290.32
101_R125_R0.7290.32
96_G101_R0.7230.32
73_Q135_K0.7230.32
36_G80_G0.7170.32
12_T18_K0.7070.31
101_R113_E0.7050.31
42_V102_M0.7030.31
116_L126_I0.6970.30
15_E115_I0.6930.30
119_A127_Q0.6850.30
57_G75_L0.6820.30
30_P94_I0.6790.29
34_P127_Q0.6780.29
93_L111_L0.6770.29
133_N136_N0.6770.29
40_L87_I0.6760.29
98_T118_A0.6730.29
61_A71_R0.6700.29
41_T94_I0.6680.29
72_E94_I0.6680.29
3_D59_K0.6650.28
69_E73_Q0.6620.28
24_N29_D0.6590.28
42_V93_L0.6570.28
74_K101_R0.6570.28
2_A18_K0.6550.28
58_G99_G0.6500.28
9_L77_F0.6360.27
104_H123_L0.6310.26
21_I41_T0.6300.26
11_K31_V0.6300.26
75_L95_V0.6240.26
50_A74_K0.6170.26
33_T36_G0.6160.26
26_I91_A0.6160.26
31_V96_G0.6120.25
59_K135_K0.6080.25
126_I135_K0.6040.25
61_A113_E0.6030.25
19_E85_V0.5980.25
74_K140_G0.5940.24
16_N109_T0.5940.24
98_T109_T0.5920.24
110_H113_E0.5900.24
5_P23_V0.5890.24
103_L113_E0.5820.24
126_I138_S0.5770.24
73_Q116_L0.5760.23
17_L85_V0.5650.23
44_K109_T0.5640.23
13_A119_A0.5610.23
55_E59_K0.5590.23
33_T104_H0.5580.23
30_P47_F0.5510.22
8_G75_L0.5510.22
59_K128_Q0.5510.22
83_G87_I0.5490.22
11_K90_I0.5490.22
42_V121_Q0.5480.22
7_Q102_M0.5440.22
32_E87_I0.5400.22
70_T138_S0.5370.21
112_I129_M0.5360.21
70_T134_N0.5320.21
2_A127_Q0.5320.21
43_S49_F0.5290.21
111_L126_I0.5270.21
73_Q131_K0.5250.21
44_K72_E0.5210.21
46_G111_L0.5140.20
74_K123_L0.5130.20
70_T122_T0.5130.20
73_Q134_N0.5090.20
128_Q138_S0.5070.20
13_A18_K0.5060.20
2_A72_E0.5030.20
109_T117_D0.5000.20
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2pihA 2 0.2781 14.7 0.952 Contact Map
2jmkA 1 0.6424 6 0.959 Contact Map
1t72A 5 0.3841 4.7 0.961 Contact Map
2oeqA 4 0.2715 4.2 0.962 Contact Map
3c3dA 2 0.5033 4.1 0.963 Contact Map
2jvdA 1 0.2318 3.4 0.964 Contact Map
3bhpA 3 0.2318 3.3 0.964 Contact Map
2hepA 1 0.2318 3.1 0.965 Contact Map
4r3oM 1 0.3377 2.7 0.966 Contact Map
2jzvA 1 0.2583 2.6 0.966 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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