TAGO - BACSU - GREMLIN Contacts

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TAGO - Probable undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase

UniProt:	O34753	Sequences: MLDERMIRIVVAFIVSLLTVLIITPIVKRIAIKIGAVDQPSNRKVHDKIMPRMGGLAIFIGVVAGVLASGIYTETRMTAITVGAFIIIVLGILDDKYQLSAKVKFLIQLGVAIMIVSTGLKMDFFSVPFLTERFELGWMAYPLTVLWIVGITNAINLIDGLDGLAAGLSVIGLSTIAVMALSGGKVLILSLSLVVIASTLGFLFYNFHPAKIFMGDTGSLFLGYSISILSLLGLYKSVTLFSIVIPIIILGVPIFDTTFAIIRRILNKQPISAPDKSHIHHRLMAFGLSHRMSVLVIYLIGFIFSISAIVLKSATIWLSLFIIFILIIFMQIIAEVTGLVNEKFKPFTKFYKRLVKRN	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	358 (296)
Sequences:	6732 (4412)
Seq/√Len:	256.5

ECOLI - WECA MRAY
BACSU - TAGO MRAY
SULSO - GPT

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
275_D	286_F	4.157	1.00
175_T	305_S	4.085	1.00
262_I	271_I	4.059	1.00
167_G	298_Y	3.967	1.00
177_A	193_L	3.498	1.00
192_S	229_L	3.348	1.00
100_S	103_V	3.324	1.00
251_G	304_F	3.068	1.00
86_I	111_V	2.800	1.00
170_V	196_I	2.762	1.00
58_I	214_M	2.463	1.00
148_I	227_S	2.429	1.00
84_A	221_F	2.400	1.00
59_F	88_I	2.355	1.00
20_V	61_G	2.354	1.00
93_L	97_Y	2.320	1.00
276_K	285_A	2.302	1.00
174_S	196_I	2.279	1.00
20_V	201_G	2.204	1.00
289_S	292_M	2.137	1.00
38_D	41_S	2.106	1.00
59_F	85_F	2.103	1.00
166_A	199_T	1.968	1.00
90_L	107_I	1.953	1.00
61_G	65_G	1.950	1.00
83_G	224_Y	1.946	1.00
28_K	32_I	1.932	1.00
63_V	85_F	1.924	1.00
166_A	203_L	1.918	1.00
266_L	271_I	1.884	1.00
195_V	225_S	1.861	1.00
37_V	40_P	1.855	1.00
155_I	169_S	1.849	1.00
62_V	195_V	1.843	1.00
191_L	225_S	1.839	1.00
115_I	228_I	1.802	1.00
169_S	173_L	1.798	1.00
195_V	222_L	1.751	1.00
9_I	193_L	1.720	1.00
109_L	145_V	1.720	1.00
24_T	57_A	1.676	1.00
157_L	257_T	1.656	1.00
139_M	142_P	1.640	1.00
25_P	29_R	1.635	1.00
41_S	44_K	1.635	1.00
104_K	108_Q	1.623	1.00
177_A	192_S	1.613	1.00
170_V	200_L	1.598	1.00
113_I	145_V	1.580	1.00
19_T	61_G	1.580	1.00
43_R	46_H	1.577	1.00
173_L	195_V	1.568	1.00
168_L	301_G	1.568	1.00
180_A	233_G	1.562	1.00
17_L	204_F	1.553	1.00
12_A	194_V	1.546	1.00
92_I	96_K	1.539	1.00
207_F	295_L	1.521	1.00
15_V	69_S	1.490	1.00
104_K	220_L	1.487	1.00
27_V	57_A	1.485	1.00
58_I	198_S	1.478	1.00
30_I	33_K	1.470	1.00
21_L	204_F	1.469	1.00
288_L	296_V	1.466	1.00
105_F	108_Q	1.453	1.00
265_I	271_I	1.447	1.00
109_L	149_V	1.444	1.00
166_A	170_V	1.437	1.00
181_L	189_L	1.421	1.00
175_T	249_I	1.418	1.00
172_G	226_I	1.409	1.00
144_T	231_L	1.401	1.00
150_G	261_I	1.381	1.00
260_A	263_R	1.378	1.00
138_W	142_P	1.373	1.00
162_D	209_P	1.371	1.00
171_I	298_Y	1.348	1.00
37_V	41_S	1.345	1.00
173_L	196_I	1.325	1.00
89_V	93_L	1.311	1.00
169_S	222_L	1.306	1.00
172_G	301_G	1.295	1.00
59_F	221_F	1.284	1.00
36_A	41_S	1.271	1.00
173_L	226_I	1.268	1.00
292_M	296_V	1.257	1.00
29_R	33_K	1.256	1.00
24_T	212_I	1.253	1.00
46_H	213_F	1.252	1.00
156_N	216_D	1.236	1.00
112_A	145_V	1.233	1.00
171_I	305_S	1.233	1.00
199_T	222_L	1.228	1.00
208_H	291_R	1.209	1.00
109_L	113_I	1.203	1.00
295_L	299_L	1.198	1.00
279_I	283_L	1.196	1.00
113_I	117_S	1.188	1.00
65_G	194_V	1.186	1.00
58_I	199_T	1.182	1.00
88_I	217_T	1.180	1.00
115_I	119_G	1.177	1.00
90_L	111_V	1.171	1.00
16_S	197_A	1.162	1.00
112_A	148_I	1.162	1.00
127_V	130_L	1.152	1.00
168_L	253_P	1.151	1.00
147_W	151_I	1.151	1.00
30_I	34_I	1.149	1.00
154_A	257_T	1.148	1.00
80_I	188_I	1.145	1.00
148_I	228_I	1.138	1.00
160_G	280_H	1.137	1.00
17_L	201_G	1.136	1.00
35_G	38_D	1.132	1.00
21_L	201_G	1.128	1.00
147_W	230_S	1.128	1.00
258_T	262_I	1.124	1.00
63_V	81_T	1.123	1.00
144_T	148_I	1.122	1.00
36_A	39_Q	1.121	1.00
105_F	149_V	1.115	1.00
173_L	192_S	1.110	1.00
153_N	156_N	1.109	1.00
140_A	144_T	1.106	1.00
87_I	112_A	1.094	1.00
36_A	40_P	1.094	1.00
155_I	165_A	1.091	1.00
180_A	188_I	1.091	1.00
152_T	220_L	1.091	1.00
19_T	65_G	1.090	1.00
256_D	280_H	1.085	1.00
121_K	140_A	1.077	1.00
301_G	305_S	1.076	1.00
150_G	257_T	1.076	1.00
201_G	205_Y	1.071	1.00
172_G	249_I	1.068	1.00
151_I	254_I	1.055	1.00
86_I	107_I	1.055	1.00
177_A	196_I	1.040	1.00
29_R	32_I	1.039	1.00
194_V	197_A	1.035	1.00
116_V	145_V	1.035	1.00
87_I	224_Y	1.032	1.00
275_D	285_A	1.028	1.00
62_V	198_S	1.025	1.00
172_G	250_L	1.022	1.00
255_F	279_I	1.019	1.00
221_F	225_S	1.017	1.00
112_A	149_V	1.015	1.00
108_Q	220_L	1.013	1.00
165_A	253_P	1.012	1.00
26_I	29_R	1.011	1.00
84_A	225_S	1.009	1.00
171_I	301_G	1.003	1.00
50_M	210_A	1.003	1.00
13_F	197_A	0.998	1.00
50_M	213_F	0.995	1.00
61_G	64_A	0.993	1.00
82_V	86_I	0.985	1.00
166_A	214_M	0.984	1.00
20_V	24_T	0.983	1.00
260_A	277_S	0.977	1.00
91_G	220_L	0.970	1.00
161_L	294_V	0.958	1.00
197_A	201_G	0.957	1.00
79_A	118_T	0.956	1.00
248_I	308_A	0.955	1.00
158_I	168_L	0.955	1.00
168_L	252_V	0.954	1.00
22_I	26_I	0.953	1.00
115_I	148_I	0.952	1.00
87_I	111_V	0.950	1.00
150_G	254_I	0.948	1.00
177_A	180_A	0.947	1.00
83_G	111_V	0.944	1.00
257_T	261_I	0.942	1.00
13_F	193_L	0.942	1.00
108_Q	152_T	0.940	1.00
108_Q	149_V	0.939	1.00
105_F	109_L	0.938	1.00
169_S	226_I	0.938	1.00
175_T	309_I	0.937	1.00
254_I	257_T	0.936	1.00
52_R	217_T	0.935	1.00
108_Q	153_N	0.935	1.00
24_T	201_G	0.933	1.00
104_K	152_T	0.929	1.00
37_V	49_I	0.928	1.00
204_F	296_V	0.923	1.00
260_A	264_R	0.922	1.00
28_K	211_K	0.917	1.00
203_L	207_F	0.914	1.00
97_Y	100_S	0.911	1.00
25_P	205_Y	0.910	1.00
83_G	228_I	0.910	1.00
83_G	115_I	0.904	1.00
288_L	292_M	0.893	1.00
174_S	178_V	0.890	1.00
177_A	181_L	0.890	1.00
169_S	199_T	0.889	1.00
180_A	189_L	0.885	1.00
173_L	199_T	0.884	1.00
177_A	189_L	0.880	1.00
104_K	157_L	0.878	1.00
170_V	199_T	0.877	1.00
252_V	297_I	0.874	1.00
23_I	57_A	0.870	1.00
176_I	230_S	0.869	1.00
59_F	84_A	0.865	1.00
62_V	84_A	0.863	1.00
249_I	305_S	0.861	1.00
171_I	302_F	0.857	0.99
200_L	204_F	0.850	0.99
62_V	221_F	0.848	0.99
249_I	308_A	0.847	0.99
35_G	39_Q	0.846	0.99
179_M	249_I	0.844	0.99
262_I	265_I	0.843	0.99
208_H	290_H	0.837	0.99
176_I	249_I	0.834	0.99
116_V	120_L	0.833	0.99
284_M	287_G	0.830	0.99
17_L	21_L	0.825	0.99
87_I	152_T	0.817	0.99
19_T	64_A	0.811	0.99
116_V	144_T	0.800	0.99
80_I	225_S	0.800	0.99
66_V	77_M	0.793	0.99
157_L	261_I	0.792	0.99
139_M	143_L	0.791	0.99
80_I	84_A	0.789	0.99
146_L	150_G	0.786	0.99
26_I	30_I	0.785	0.99
80_I	228_I	0.780	0.99
104_K	107_I	0.777	0.99
102_K	106_L	0.774	0.99
155_I	250_L	0.773	0.99
166_A	202_F	0.764	0.99
17_L	200_L	0.764	0.99
93_L	96_K	0.761	0.99
87_I	107_I	0.761	0.99
165_A	222_L	0.758	0.99
172_G	305_S	0.757	0.99
116_V	119_G	0.757	0.99
207_F	291_R	0.755	0.99
21_L	205_Y	0.754	0.99
191_L	229_L	0.749	0.99
123_D	135_E	0.746	0.99
143_L	147_W	0.746	0.99
281_H	284_M	0.745	0.99
172_G	253_P	0.744	0.99
283_L	297_I	0.742	0.99
213_F	216_D	0.735	0.98
42_N	46_H	0.735	0.98
39_Q	49_I	0.734	0.98
259_F	263_R	0.734	0.98
16_S	198_S	0.733	0.98
266_L	269_Q	0.732	0.98
11_V	15_V	0.731	0.98
12_A	190_S	0.730	0.98
264_R	278_H	0.730	0.98
82_V	114_M	0.729	0.98
208_H	294_V	0.728	0.98
34_I	38_D	0.728	0.98
299_L	303_I	0.727	0.98
155_I	172_G	0.724	0.98
45_V	290_H	0.723	0.98
176_I	233_G	0.723	0.98
307_S	311_L	0.723	0.98
124_F	135_E	0.720	0.98
250_L	253_P	0.714	0.98
161_L	293_S	0.713	0.98
116_V	141_Y	0.711	0.98
156_N	213_F	0.710	0.98
306_I	310_V	0.709	0.98
135_E	139_M	0.706	0.98
304_F	308_A	0.704	0.98
20_V	58_I	0.704	0.98
71_I	74_E	0.698	0.98
300_I	304_F	0.697	0.98
141_Y	145_V	0.696	0.98
24_T	28_K	0.694	0.98
86_I	90_L	0.693	0.98
158_I	280_H	0.691	0.98
31_A	37_V	0.689	0.98
62_V	173_L	0.689	0.98
38_D	44_K	0.688	0.98
283_L	288_L	0.687	0.98
19_T	23_I	0.686	0.98
171_I	175_T	0.686	0.98
151_I	227_S	0.686	0.98
253_P	275_D	0.685	0.98
303_I	307_S	0.682	0.97
13_F	196_I	0.679	0.97
288_L	293_S	0.679	0.97
18_L	22_I	0.679	0.97
10_V	14_I	0.678	0.97
35_G	40_P	0.672	0.97
103_V	106_L	0.672	0.97
150_G	154_A	0.671	0.97
151_I	230_S	0.671	0.97
275_D	280_H	0.668	0.97
153_N	216_D	0.667	0.97
88_I	221_F	0.667	0.97
309_I	312_K	0.667	0.97
190_S	194_V	0.665	0.97
265_I	277_S	0.664	0.97
87_I	108_Q	0.663	0.97
157_L	264_R	0.660	0.97
151_I	250_L	0.660	0.97
250_L	254_I	0.660	0.97
12_A	65_G	0.658	0.97
73_T	110_G	0.656	0.97
88_I	92_I	0.654	0.97
62_V	66_V	0.654	0.97
137_G	142_P	0.654	0.97
249_I	301_G	0.653	0.97
92_I	217_T	0.651	0.97
267_N	270_P	0.651	0.97
275_D	278_H	0.650	0.97
85_F	89_V	0.649	0.97
230_S	246_P	0.648	0.97
127_V	132_E	0.648	0.97
173_L	225_S	0.648	0.97
252_V	301_G	0.638	0.96
28_K	212_I	0.636	0.96
176_I	192_S	0.634	0.96
100_S	104_K	0.633	0.96
56_L	217_T	0.633	0.96
128_P	131_T	0.633	0.96
267_N	277_S	0.631	0.96
84_A	191_L	0.625	0.96
115_I	118_T	0.625	0.96
179_M	312_K	0.625	0.96
260_A	281_H	0.625	0.96
31_A	51_P	0.624	0.96
62_V	191_L	0.624	0.96
152_T	219_S	0.623	0.96
136_L	140_A	0.622	0.96
13_F	17_L	0.622	0.96
65_G	68_A	0.621	0.96
157_L	260_A	0.619	0.96
15_V	65_G	0.619	0.96
56_L	88_I	0.618	0.96
124_F	133_R	0.615	0.95
293_S	297_I	0.614	0.95
126_S	129_F	0.612	0.95
53_M	92_I	0.607	0.95
219_S	264_R	0.605	0.95
256_D	264_R	0.603	0.95
294_V	298_Y	0.602	0.95
224_Y	228_I	0.602	0.95
35_G	41_S	0.602	0.95
167_G	294_V	0.600	0.95
158_I	253_P	0.600	0.95
178_V	309_I	0.597	0.95
38_D	52_R	0.596	0.95
170_V	174_S	0.596	0.95
289_S	293_S	0.595	0.95
54_G	202_F	0.595	0.95
159_D	218_G	0.594	0.94
104_K	216_D	0.594	0.94
263_R	275_D	0.591	0.94
42_N	45_V	0.586	0.94
161_L	298_Y	0.585	0.94
9_I	12_A	0.585	0.94
189_L	193_L	0.585	0.94
165_A	214_M	0.584	0.94
262_I	266_L	0.584	0.94
142_P	145_V	0.581	0.94
90_L	220_L	0.581	0.94
23_I	61_G	0.580	0.94
159_D	214_M	0.579	0.94
61_G	198_S	0.578	0.94
268_K	271_I	0.578	0.94
188_I	232_L	0.577	0.94
101_A	105_F	0.576	0.94
14_I	18_L	0.575	0.93
296_V	299_L	0.574	0.93
66_V	191_L	0.572	0.93
16_S	65_G	0.571	0.93
164_L	297_I	0.570	0.93
261_I	264_R	0.570	0.93
65_G	69_S	0.567	0.93
183_G	186_V	0.567	0.93
214_M	222_L	0.566	0.93
275_D	281_H	0.565	0.93
16_S	61_G	0.562	0.93
167_G	171_I	0.561	0.93
58_I	62_V	0.560	0.93
117_S	121_K	0.559	0.92
87_I	220_L	0.559	0.92
53_M	96_K	0.557	0.92
255_F	300_I	0.555	0.92
152_T	224_Y	0.554	0.92
178_V	182_S	0.552	0.92
115_I	224_Y	0.550	0.92
124_F	128_P	0.549	0.92
45_V	284_M	0.548	0.92
202_F	214_M	0.546	0.92
118_T	122_M	0.546	0.92
39_Q	48_K	0.546	0.92
165_A	202_F	0.545	0.92
27_V	30_I	0.544	0.91
284_M	293_S	0.543	0.91
118_T	121_K	0.538	0.91
59_F	62_V	0.537	0.91
108_Q	219_S	0.535	0.91
152_T	227_S	0.534	0.91
291_R	295_L	0.531	0.90
150_G	258_T	0.531	0.90
112_A	227_S	0.529	0.90
279_I	297_I	0.529	0.90
45_V	161_L	0.528	0.90
263_R	277_S	0.528	0.90
101_A	264_R	0.526	0.90
207_F	292_M	0.524	0.90
162_D	214_M	0.524	0.90
204_F	211_K	0.523	0.90
246_P	257_T	0.523	0.90
217_T	220_L	0.523	0.90
31_A	53_M	0.521	0.90
261_I	265_I	0.521	0.90
231_L	235_Y	0.521	0.90
52_R	290_H	0.519	0.89
179_M	233_G	0.517	0.89
113_I	141_Y	0.517	0.89
204_F	299_L	0.515	0.89
308_A	312_K	0.515	0.89
253_P	280_H	0.515	0.89
179_M	235_Y	0.514	0.89
290_H	294_V	0.514	0.89
40_P	48_K	0.510	0.89
256_D	283_L	0.507	0.88
83_G	86_I	0.507	0.88
192_S	225_S	0.506	0.88
158_I	260_A	0.505	0.88
148_I	152_T	0.504	0.88
180_A	192_S	0.504	0.88
159_D	165_A	0.503	0.88
24_T	31_A	0.503	0.88
135_E	138_W	0.500	0.88

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
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HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4j72A	2	0.8073	100	0.239	Contact Map
2rddB	1	0.1034	11.1	0.966	Contact Map
3j01B	1	0.1899	9.7	0.967	Contact Map
2ls4A	1	0.067	8.1	0.968	Contact Map
2m20A	2	0.1201	7.9	0.969	Contact Map
1j27A	2	0.1034	5.7	0.971	Contact Map
4p6zV	1	0	5.4	0.971	Contact Map
3echC	1	0.0391	4.8	0.972	Contact Map
4eneA	2	0.6648	4.4	0.972	Contact Map
3ne5A	3	0.1927	4.2	0.972	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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