YODF - BACSU - GREMLIN Contacts

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YODF - Uncharacterized symporter YodF

UniProt:	O34745	Sequences: MQGNLTALLITAIIVLTVVCIGFLAGRDKSSRTSVEEWSVGGRRFGGLLVWFLVGADLYTAYTFLGLTSTAFTGGSVAFFAIPYSVLAYFIAYFFLPKLWKVAKIHKLTTLADYARERFNSKLLASLVAIVGVLMLIPYICLQLSGIQDTLQVAGTGYINVKFVVIISFILVALYTFFSGIKGPTYTAIIKDILVWVIMLFMVVSLPLIHFNGWTPMIDTLVKEAPQMLTIPSEGPKGIPWFITASIVSALALFMWAHAATGVFTAKSADAVRKNSMFLPLYNIVLILVIFLGFIAFLVLPEDTNPRLALLHLIQTSYGGVAQGFAYATIALASLIPCSIMAIGASNLFANNLYRDLIHPNVSQSKLTLVTRSMVFVVIGLALLFGMLFPTALVTLQLLGVSGMVQIFPAIAVSLFWKNQTKEATVIGLLAGLAVTFIVYITQSAHGIYEGFWGLAANMIAVVILNPLFVKNAGSNPVIEGLFGKKQDANPNQKGA	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	496 (457)
Sequences:	11591 (7392)
Seq/√Len:	345.8

ECOLI - PUTP PANF ACTP YIDK
BACSU - YODF OPUE YWCA YHJB YCGO
HALSA - Q9HP63 Q9HR16
SULSO - Q7LX83 Q97VX6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
431_A	461_A	5.940	1.00
363_S	366_K	4.124	1.00
420_Q	462_V	3.902	1.00
268_S	271_A	3.895	1.00
359_H	366_K	3.737	1.00
173_A	379_I	3.416	1.00
431_A	457_A	3.382	1.00
20_C	24_L	3.370	1.00
354_Y	362_V	3.238	1.00
463_V	467_P	3.114	1.00
428_G	462_V	3.112	1.00
461_A	465_L	3.055	1.00
427_I	465_L	3.039	1.00
421_T	469_F	2.987	1.00
465_L	469_F	2.979	1.00
435_V	457_A	2.911	1.00
206_L	295_I	2.830	1.00
365_S	369_L	2.779	1.00
424_A	466_N	2.766	1.00
216_P	219_D	2.713	1.00
116_R	125_A	2.677	1.00
423_E	469_F	2.626	1.00
413_V	462_V	2.606	1.00
204_V	208_L	2.600	1.00
160_N	163_F	2.536	1.00
369_L	373_S	2.536	1.00
181_I	265_T	2.462	1.00
45_F	185_T	2.444	1.00
169_F	383_L	2.413	1.00
373_S	377_V	2.363	1.00
296_A	309_A	2.331	1.00
13_I	17_T	2.273	1.00
421_T	424_A	2.262	1.00
427_I	461_A	2.256	1.00
36_E	43_R	2.248	1.00
69_S	307_R	2.169	1.00
267_K	271_A	2.122	1.00
114_Y	414_S	2.094	1.00
410_A	425_T	2.091	1.00
116_R	122_K	2.079	1.00
362_V	366_K	2.058	1.00
123_L	426_V	2.034	1.00
14_I	18_V	2.028	1.00
421_T	466_N	2.022	1.00
219_D	223_K	2.009	1.00
417_W	420_Q	2.000	1.00
359_H	362_V	1.998	1.00
198_I	329_T	1.970	1.00
16_L	20_C	1.965	1.00
61_A	146_G	1.959	1.00
119_F	420_Q	1.944	1.00
40_V	43_R	1.930	1.00
380_G	384_L	1.926	1.00
166_I	170_I	1.918	1.00
423_E	427_I	1.916	1.00
424_A	465_L	1.909	1.00
37_E	42_G	1.885	1.00
460_I	464_I	1.879	1.00
120_N	123_L	1.870	1.00
434_A	438_I	1.864	1.00
271_A	274_K	1.819	1.00
351_N	355_R	1.808	1.00
424_A	428_G	1.805	1.00
216_P	220_T	1.787	1.00
179_S	183_G	1.779	1.00
49_L	189_I	1.773	1.00
172_V	338_C	1.772	1.00
417_W	463_V	1.765	1.00
200_L	204_V	1.763	1.00
354_Y	370_V	1.760	1.00
270_D	274_K	1.759	1.00
270_D	273_R	1.749	1.00
413_V	459_M	1.730	1.00
21_I	190_I	1.718	1.00
419_N	470_V	1.716	1.00
324_G	328_A	1.711	1.00
108_L	117_E	1.702	1.00
369_L	372_R	1.693	1.00
419_N	467_P	1.679	1.00
47_G	271_A	1.670	1.00
417_W	467_P	1.662	1.00
349_F	374_M	1.634	1.00
354_Y	359_H	1.628	1.00
222_V	226_P	1.627	1.00
427_I	431_A	1.592	1.00
188_A	262_G	1.588	1.00
366_K	369_L	1.582	1.00
312_H	316_T	1.578	1.00
355_R	367_L	1.568	1.00
170_I	174_L	1.566	1.00
456_A	460_I	1.562	1.00
8_L	12_A	1.553	1.00
349_F	353_L	1.541	1.00
130_I	353_L	1.531	1.00
211_F	217_M	1.528	1.00
113_D	352_N	1.525	1.00
219_D	222_V	1.521	1.00
148_Q	165_V	1.499	1.00
300_L	316_T	1.489	1.00
342_A	379_I	1.478	1.00
431_A	435_V	1.466	1.00
50_V	53_L	1.463	1.00
7_A	321_V	1.450	1.00
120_N	422_K	1.440	1.00
354_Y	366_K	1.432	1.00
228_M	231_I	1.431	1.00
95_F	412_A	1.426	1.00
52_F	189_I	1.425	1.00
127_L	426_V	1.400	1.00
47_G	51_W	1.396	1.00
362_V	367_L	1.395	1.00
50_V	266_A	1.389	1.00
172_V	335_L	1.383	1.00
149_D	305_N	1.377	1.00
428_G	432_G	1.369	1.00
421_T	470_V	1.356	1.00
188_A	339_S	1.337	1.00
17_T	21_I	1.336	1.00
162_K	387_M	1.333	1.00
169_F	379_I	1.331	1.00
345_A	378_V	1.329	1.00
165_V	383_L	1.321	1.00
118_R	414_S	1.315	1.00
131_V	433_L	1.310	1.00
12_A	16_L	1.304	1.00
113_D	351_N	1.302	1.00
215_T	219_D	1.296	1.00
122_K	126_S	1.296	1.00
39_S	371_T	1.291	1.00
125_A	352_N	1.290	1.00
220_T	223_K	1.278	1.00
368_T	372_R	1.267	1.00
147_I	168_S	1.252	1.00
187_T	339_S	1.250	1.00
457_A	461_A	1.250	1.00
18_V	190_I	1.248	1.00
222_V	225_A	1.239	1.00
191_K	339_S	1.238	1.00
226_P	230_T	1.234	1.00
281_L	286_L	1.230	1.00
281_L	285_V	1.228	1.00
57_D	340_I	1.226	1.00
163_F	167_I	1.225	1.00
110_T	347_N	1.223	1.00
29_K	37_E	1.215	1.00
283_N	286_L	1.207	1.00
122_K	356_D	1.206	1.00
279_L	286_L	1.206	1.00
366_K	370_V	1.204	1.00
421_T	465_L	1.203	1.00
124_L	425_T	1.200	1.00
114_Y	118_R	1.196	1.00
9_L	13_I	1.191	1.00
41_G	45_F	1.184	1.00
257_A	261_T	1.176	1.00
282_Y	286_L	1.174	1.00
34_S	37_E	1.173	1.00
124_L	426_V	1.170	1.00
419_N	471_K	1.160	1.00
358_I	362_V	1.158	1.00
116_R	356_D	1.155	1.00
214_W	218_I	1.141	1.00
163_F	166_I	1.140	1.00
435_V	461_A	1.139	1.00
349_F	354_Y	1.133	1.00
420_Q	424_A	1.130	1.00
295_I	299_V	1.128	1.00
220_T	298_L	1.128	1.00
423_E	465_L	1.126	1.00
159_I	164_V	1.124	1.00
162_K	166_I	1.123	1.00
279_L	282_Y	1.122	1.00
193_I	197_V	1.116	1.00
212_N	216_P	1.110	1.00
41_G	181_I	1.107	1.00
245_A	248_V	1.105	1.00
303_D	306_P	1.105	1.00
50_V	54_V	1.104	1.00
406_Q	458_N	1.103	1.00
130_I	134_L	1.102	1.00
152_Q	161_V	1.101	1.00
53_L	340_I	1.101	1.00
24_L	28_D	1.101	1.00
128_V	429_L	1.095	1.00
419_N	472_N	1.091	1.00
428_G	458_N	1.088	1.00
144_L	169_F	1.082	1.00
166_I	387_M	1.079	1.00
71_A	78_A	1.078	1.00
350_A	371_T	1.077	1.00
374_M	377_V	1.076	1.00
83_P	87_L	1.076	1.00
48_L	52_F	1.074	1.00
14_I	335_L	1.073	1.00
17_T	190_I	1.070	1.00
188_A	340_I	1.067	1.00
279_L	283_N	1.063	1.00
172_V	339_S	1.060	1.00
17_T	20_C	1.060	1.00
175_Y	335_L	1.060	1.00
432_G	436_T	1.059	1.00
280_P	284_I	1.055	1.00
166_I	383_L	1.055	1.00
252_A	256_W	1.051	1.00
201_F	205_S	1.047	1.00
123_L	127_L	1.043	1.00
257_A	344_G	1.043	1.00
140_I	382_A	1.040	1.00
127_L	429_L	1.036	1.00
51_W	55_G	1.033	1.00
135_M	403_G	1.029	1.00
459_M	463_V	1.028	1.00
314_I	326_A	1.027	1.00
133_V	349_F	1.024	1.00
175_Y	339_S	1.024	1.00
19_V	22_G	1.020	1.00
461_A	464_I	1.017	1.00
364_Q	367_L	1.014	1.00
420_Q	466_N	1.013	1.00
453_W	456_A	1.012	1.00
371_T	375_V	1.012	1.00
105_I	269_A	1.012	1.00
422_K	426_V	1.012	1.00
119_F	462_V	1.007	1.00
57_D	188_A	1.007	1.00
80_F	84_Y	1.005	1.00
197_V	201_F	1.004	1.00
141_C	385_F	0.997	1.00
9_L	12_A	0.996	1.00
96_L	100_W	0.988	1.00
384_L	388_L	0.984	1.00
413_V	420_Q	0.983	1.00
414_S	425_T	0.981	1.00
456_A	459_M	0.979	1.00
410_A	429_L	0.978	1.00
72_F	303_D	0.977	1.00
349_F	378_V	0.971	1.00
213_G	216_P	0.965	1.00
155_G	159_I	0.964	1.00
115_A	124_L	0.963	1.00
230_T	233_S	0.960	1.00
282_Y	285_V	0.956	1.00
144_L	165_V	0.956	1.00
133_V	345_A	0.952	1.00
350_A	370_V	0.951	1.00
51_W	278_F	0.949	1.00
123_L	422_K	0.946	1.00
177_F	376_F	0.946	1.00
343_I	346_S	0.945	1.00
451_G	455_L	0.943	1.00
432_G	435_V	0.941	1.00
229_L	233_S	0.939	1.00
362_V	370_V	0.938	1.00
118_R	417_W	0.933	1.00
191_K	332_L	0.932	1.00
119_F	414_S	0.930	1.00
228_M	232_P	0.927	1.00
156_T	160_N	0.926	1.00
48_L	51_W	0.925	1.00
311_L	314_I	0.925	1.00
39_S	347_N	0.924	1.00
242_F	245_A	0.924	1.00
115_A	128_V	0.922	1.00
370_V	374_M	0.916	1.00
226_P	231_I	0.913	1.00
201_F	322_A	0.911	1.00
218_I	222_V	0.908	1.00
225_A	228_M	0.906	1.00
354_Y	358_I	0.905	1.00
239_I	242_F	0.905	1.00
231_I	234_E	0.904	1.00
89_Y	93_Y	0.902	1.00
73_T	306_P	0.902	1.00
305_N	308_L	0.902	1.00
229_L	232_P	0.901	1.00
430_L	434_A	0.900	1.00
53_L	56_A	0.899	1.00
53_L	262_G	0.897	1.00
241_W	245_A	0.895	1.00
81_A	84_Y	0.888	1.00
296_A	313_L	0.888	1.00
423_E	468_L	0.887	1.00
51_W	54_V	0.886	1.00
20_C	23_F	0.885	1.00
49_L	185_T	0.885	1.00
175_Y	336_I	0.882	1.00
336_I	339_S	0.882	1.00
247_I	256_W	0.882	1.00
175_Y	191_K	0.878	1.00
61_A	334_S	0.878	1.00
292_L	313_L	0.878	1.00
97_P	269_A	0.875	1.00
203_V	288_L	0.874	1.00
72_F	302_E	0.872	1.00
249_S	252_A	0.870	1.00
97_P	273_R	0.869	1.00
56_A	262_G	0.868	1.00
106_H	117_E	0.866	1.00
346_S	350_A	0.861	1.00
312_H	315_Q	0.859	1.00
217_M	295_I	0.859	1.00
19_V	23_F	0.855	1.00
18_V	22_G	0.855	1.00
247_I	252_A	0.854	1.00
211_F	216_P	0.850	1.00
36_E	107_K	0.849	1.00
14_I	332_L	0.846	1.00
396_L	404_M	0.846	1.00
380_G	383_L	0.846	1.00
279_L	285_V	0.845	1.00
33_T	37_E	0.845	1.00
417_W	466_N	0.842	1.00
187_T	191_K	0.842	1.00
199_M	289_V	0.841	1.00
210_H	299_V	0.840	1.00
354_Y	360_P	0.838	1.00
60_T	139_Y	0.837	1.00
215_T	218_I	0.831	1.00
93_Y	277_M	0.831	1.00
23_F	27_R	0.830	1.00
191_K	336_I	0.830	1.00
47_G	278_F	0.825	1.00
439_V	453_W	0.823	1.00
244_T	248_V	0.821	1.00
424_A	427_I	0.820	1.00
239_I	243_I	0.818	1.00
131_V	429_L	0.817	1.00
52_F	192_D	0.813	1.00
53_L	57_D	0.811	1.00
71_A	294_F	0.810	1.00
152_Q	156_T	0.809	1.00
127_L	430_L	0.809	1.00
47_G	274_K	0.807	1.00
175_Y	183_G	0.804	1.00
217_M	221_L	0.804	1.00
459_M	462_V	0.800	1.00
191_K	337_P	0.799	1.00
413_V	463_V	0.798	1.00
227_Q	230_T	0.796	1.00
314_I	323_Q	0.794	1.00
55_G	282_Y	0.793	1.00
226_P	229_L	0.790	1.00
266_A	272_V	0.789	1.00
90_F	94_F	0.788	1.00
64_F	326_A	0.788	1.00
409_P	459_M	0.787	1.00
393_L	397_Q	0.784	1.00
14_I	22_G	0.782	1.00
11_T	331_A	0.782	1.00
165_V	386_G	0.782	1.00
458_N	462_V	0.780	1.00
56_A	191_K	0.779	1.00
184_P	187_T	0.778	1.00
244_T	247_I	0.778	1.00
48_L	53_L	0.777	1.00
318_Y	322_A	0.777	1.00
429_L	432_G	0.776	1.00
201_F	204_V	0.772	1.00
60_T	64_F	0.768	1.00
126_S	357_L	0.767	1.00
159_I	167_I	0.766	1.00
11_T	15_V	0.765	1.00
421_T	471_K	0.764	1.00
253_L	256_W	0.761	1.00
410_A	458_N	0.760	1.00
202_M	206_L	0.753	1.00
23_F	178_F	0.752	1.00
70_T	74_G	0.752	1.00
358_I	361_N	0.749	1.00
279_L	284_I	0.747	1.00
308_L	312_H	0.747	1.00
228_M	233_S	0.747	1.00
417_W	424_A	0.745	1.00
417_W	421_T	0.742	1.00
355_R	360_P	0.741	1.00
25_A	29_K	0.738	1.00
393_L	400_G	0.737	0.99
80_F	83_P	0.737	0.99
24_L	186_Y	0.737	0.99
397_Q	401_V	0.737	0.99
207_P	213_G	0.736	0.99
432_G	458_N	0.735	0.99
247_I	251_L	0.732	0.99
94_F	97_P	0.732	0.99
96_L	272_V	0.731	0.99
425_T	432_G	0.731	0.99
463_V	466_N	0.727	0.99
205_S	210_H	0.727	0.99
426_V	430_L	0.726	0.99
375_V	379_I	0.726	0.99
184_P	340_I	0.725	0.99
397_Q	404_M	0.725	0.99
413_V	417_W	0.724	0.99
64_F	199_M	0.724	0.99
377_V	381_L	0.724	0.99
24_L	27_R	0.723	0.99
419_N	422_K	0.723	0.99
181_I	185_T	0.723	0.99
464_I	468_L	0.722	0.99
41_G	265_T	0.720	0.99
156_T	159_I	0.719	0.99
245_A	252_A	0.718	0.99
161_V	165_V	0.717	0.99
250_A	256_W	0.714	0.99
46_G	271_A	0.713	0.99
428_G	431_A	0.713	0.99
53_L	185_T	0.713	0.99
22_G	26_G	0.712	0.99
186_Y	189_I	0.711	0.99
87_L	91_I	0.709	0.99
431_A	465_L	0.708	0.99
373_S	376_F	0.704	0.99
383_L	386_G	0.704	0.99
94_F	98_K	0.703	0.99
196_W	200_L	0.703	0.99
151_L	164_V	0.703	0.99
435_V	438_I	0.702	0.99
464_I	467_P	0.701	0.99
441_I	445_A	0.701	0.99
58_L	401_V	0.701	0.99
435_V	439_V	0.700	0.99
442_T	445_A	0.698	0.99
441_I	444_S	0.697	0.99
423_E	470_V	0.697	0.99
7_A	323_Q	0.696	0.99
15_V	18_V	0.694	0.99
10_I	324_G	0.693	0.99
346_S	375_V	0.692	0.99
454_G	458_N	0.692	0.99
76_S	294_F	0.692	0.99
457_A	460_I	0.689	0.99
207_P	214_W	0.684	0.99
292_L	310_L	0.683	0.99
143_Q	337_P	0.682	0.99
342_A	375_V	0.682	0.99
50_V	55_G	0.680	0.99
452_F	456_A	0.679	0.99
303_D	312_H	0.679	0.99
25_A	186_Y	0.678	0.99
82_I	85_S	0.677	0.99
98_K	416_F	0.677	0.99
113_D	117_E	0.676	0.99
252_A	255_M	0.676	0.99
48_L	189_I	0.675	0.99
389_F	392_A	0.675	0.99
202_M	310_L	0.674	0.99
218_I	221_L	0.672	0.99
176_T	339_S	0.672	0.99
367_L	371_T	0.672	0.99
321_V	325_F	0.671	0.99
337_P	341_M	0.670	0.99
421_T	425_T	0.669	0.99
191_K	335_L	0.668	0.99
393_L	401_V	0.667	0.99
53_L	188_A	0.664	0.99
143_Q	338_C	0.664	0.99
19_V	174_L	0.663	0.99
247_I	255_M	0.663	0.99
423_E	426_V	0.662	0.99
126_S	129_A	0.659	0.99
280_P	283_N	0.657	0.99
81_A	85_S	0.657	0.99
313_L	317_S	0.655	0.99
38_W	375_V	0.655	0.99
82_I	86_V	0.655	0.99
126_S	353_L	0.654	0.99
443_Q	446_H	0.654	0.99
26_G	178_F	0.654	0.99
120_N	124_L	0.653	0.99
99_L	260_A	0.652	0.99
290_I	294_F	0.652	0.99
223_K	226_P	0.652	0.99
132_G	348_L	0.652	0.99
184_P	262_G	0.650	0.99
420_Q	428_G	0.649	0.99
199_M	288_L	0.649	0.99
245_A	249_S	0.648	0.99
29_K	368_T	0.647	0.99
149_D	307_R	0.646	0.99
468_L	471_K	0.646	0.99
396_L	400_G	0.644	0.99
47_G	50_V	0.644	0.99
147_I	334_S	0.641	0.99
66_G	139_Y	0.641	0.99
7_A	324_G	0.639	0.99
217_M	298_L	0.639	0.99
470_V	473_A	0.639	0.99
23_F	26_G	0.638	0.99
266_A	271_A	0.638	0.99
341_M	344_G	0.638	0.99
126_S	130_I	0.637	0.99
88_A	92_A	0.637	0.99
236_P	239_I	0.635	0.99
188_A	336_I	0.635	0.99
433_L	437_F	0.634	0.98
394_V	402_S	0.633	0.98
208_L	214_W	0.632	0.98
166_I	380_G	0.632	0.98
434_A	437_F	0.631	0.98
213_G	217_M	0.630	0.98
70_T	78_A	0.628	0.98
422_K	425_T	0.628	0.98
455_L	458_N	0.626	0.98
112_A	128_V	0.626	0.98
460_I	463_V	0.625	0.98
350_A	367_L	0.624	0.98
119_F	413_V	0.624	0.98
248_V	252_A	0.623	0.98
173_A	376_F	0.622	0.98
128_V	407_I	0.622	0.98
357_L	360_P	0.622	0.98
236_P	240_P	0.621	0.98
431_A	434_A	0.618	0.98
211_F	298_L	0.617	0.98
124_L	422_K	0.617	0.98
262_G	340_I	0.617	0.98
384_L	387_M	0.617	0.98
110_T	352_N	0.617	0.98
399_L	437_F	0.616	0.98
10_I	321_V	0.614	0.98
298_L	301_P	0.612	0.98
399_L	440_Y	0.612	0.98
47_G	54_V	0.612	0.98
7_A	10_I	0.611	0.98
241_W	244_T	0.611	0.98
149_D	152_Q	0.611	0.98
109_T	113_D	0.611	0.98
38_W	372_R	0.610	0.98
355_R	364_Q	0.610	0.98
471_K	474_G	0.610	0.98
297_F	301_P	0.608	0.98
349_F	370_V	0.606	0.98
432_G	439_V	0.605	0.98
85_S	283_N	0.600	0.98
308_L	311_L	0.600	0.98
242_F	249_S	0.600	0.98
145_S	149_D	0.599	0.98
70_T	394_V	0.599	0.98
333_A	336_I	0.599	0.98
383_L	387_M	0.598	0.98
251_L	256_W	0.598	0.98
229_L	234_E	0.597	0.98
244_T	251_L	0.595	0.98
139_Y	341_M	0.594	0.98
89_Y	277_M	0.594	0.98
249_S	254_F	0.593	0.98
120_N	473_A	0.593	0.98
139_Y	256_W	0.590	0.98
341_M	407_I	0.590	0.98
216_P	298_L	0.590	0.98
184_P	343_I	0.589	0.98
165_V	169_F	0.589	0.98
408_F	412_A	0.589	0.98
169_F	386_G	0.588	0.98
262_G	336_I	0.587	0.98
465_L	468_L	0.587	0.98
205_S	208_L	0.586	0.97
224_E	297_F	0.586	0.97
47_G	55_G	0.586	0.97
14_I	191_K	0.585	0.97
72_F	309_A	0.582	0.97
202_M	326_A	0.581	0.97
52_F	55_G	0.580	0.97
297_F	309_A	0.580	0.97
244_T	252_A	0.580	0.97
420_Q	425_T	0.579	0.97
57_D	262_G	0.578	0.97
139_Y	258_H	0.578	0.97
45_F	50_V	0.578	0.97
248_V	256_W	0.577	0.97
148_Q	161_V	0.577	0.97
440_Y	450_E	0.577	0.97
37_E	182_K	0.575	0.97
220_T	224_E	0.575	0.97
166_I	169_F	0.574	0.97
36_E	364_Q	0.574	0.97
210_H	317_S	0.574	0.97
249_S	253_L	0.573	0.97
435_V	454_G	0.573	0.97
427_I	430_L	0.573	0.97
56_A	192_D	0.571	0.97
227_Q	231_I	0.571	0.97
217_M	220_T	0.570	0.97
191_K	333_A	0.570	0.97
55_G	286_L	0.568	0.97
35_V	38_W	0.565	0.97
274_K	278_F	0.563	0.97
90_F	250_A	0.562	0.97
393_L	396_L	0.561	0.97
238_G	242_F	0.560	0.97
424_A	461_A	0.560	0.97
251_L	255_M	0.560	0.97
455_L	459_M	0.559	0.97
401_V	404_M	0.558	0.97
46_G	49_L	0.558	0.97
261_T	344_G	0.558	0.97
381_L	384_L	0.557	0.97
60_T	143_Q	0.557	0.97
118_R	418_K	0.557	0.97
227_Q	233_S	0.556	0.97
46_G	50_V	0.556	0.97
112_A	132_G	0.555	0.97
182_K	186_Y	0.555	0.97
469_F	472_N	0.555	0.97
249_S	256_W	0.555	0.97
28_D	182_K	0.554	0.97
419_N	423_E	0.553	0.96
55_G	192_D	0.552	0.96
438_I	443_Q	0.552	0.96
15_V	19_V	0.551	0.96
122_K	125_A	0.551	0.96
83_P	86_V	0.551	0.96
139_Y	143_Q	0.551	0.96
149_D	153_V	0.550	0.96
164_V	168_S	0.550	0.96
221_L	294_F	0.550	0.96
232_P	235_G	0.548	0.96
143_Q	146_G	0.548	0.96
425_T	428_G	0.547	0.96
9_L	16_L	0.546	0.96
26_G	29_K	0.546	0.96
13_I	20_C	0.544	0.96
197_V	200_L	0.543	0.96
435_V	450_E	0.542	0.96
394_V	401_V	0.542	0.96
445_A	453_W	0.541	0.96
84_Y	87_L	0.541	0.96
21_I	25_A	0.540	0.96
238_G	241_W	0.538	0.96
123_L	126_S	0.537	0.96
263_V	276_S	0.537	0.96
221_L	225_A	0.537	0.96
173_A	177_F	0.536	0.96
47_G	53_L	0.536	0.96
35_V	367_L	0.535	0.96
41_G	44_R	0.535	0.96
100_W	269_A	0.534	0.96
242_F	247_I	0.533	0.96
115_A	410_A	0.533	0.96
81_A	87_L	0.532	0.96
450_E	454_G	0.529	0.95
214_W	217_M	0.529	0.95
243_I	247_I	0.529	0.95
448_I	452_F	0.528	0.95
57_D	176_T	0.527	0.95
395_T	399_L	0.526	0.95
239_I	244_T	0.525	0.95
227_Q	232_P	0.525	0.95
35_V	39_S	0.525	0.95
60_T	66_G	0.524	0.95
64_F	69_S	0.524	0.95
350_A	354_Y	0.523	0.95
126_S	356_D	0.521	0.95
318_Y	326_A	0.519	0.95
125_A	129_A	0.519	0.95
119_F	425_T	0.518	0.95
398_L	402_S	0.517	0.95
7_A	22_G	0.517	0.95
244_T	256_W	0.516	0.95
439_V	443_Q	0.515	0.95
238_G	245_A	0.515	0.95
56_A	188_A	0.515	0.95
335_L	339_S	0.515	0.95
28_D	33_T	0.515	0.95
165_V	387_M	0.515	0.95
10_I	328_A	0.513	0.95
144_L	183_G	0.512	0.95
208_L	213_G	0.511	0.95
240_P	244_T	0.511	0.95
200_L	203_V	0.510	0.94
467_P	470_V	0.510	0.94
191_K	262_G	0.509	0.94
244_T	249_S	0.506	0.94
397_Q	400_G	0.506	0.94
65_L	146_G	0.505	0.94
175_Y	179_S	0.505	0.94
159_I	163_F	0.505	0.94
188_A	191_K	0.505	0.94
221_L	297_F	0.503	0.94
80_F	87_L	0.502	0.94
22_G	25_A	0.501	0.94
414_S	418_K	0.501	0.94
346_S	371_T	0.501	0.94
303_D	308_L	0.501	0.94
49_L	186_Y	0.500	0.94
140_I	338_C	0.500	0.94

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2xq2A	2	0.9254	100	0.232	Contact Map
3dh4A	3	0.881	100	0.273	Contact Map
3giaA	1	0.8448	99.4	0.849	Contact Map
3l1lA	2	0.8125	99.4	0.85	Contact Map
4wgvA	2	0.7339	99	0.873	Contact Map
2jlnA	1	0.8448	99	0.874	Contact Map
4djkA	2	0.7984	98.9	0.878	Contact Map
4c7rA	3	0.877	98.3	0.9	Contact Map
2wswA	3	0.8044	97.6	0.916	Contact Map
4us3A	1	0.7802	94.7	0.937	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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