YJMC - BACSU - GREMLIN Contacts

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YJMC - Uncharacterized oxidoreductase YjmC

UniProt:	O34736	Sequences: MKTITIAAEEAKELVWQKLDGAGLNERDAEKVADVLVHADLRNVHSHGVLHTEHYVNRLLAGGINPGAQPVFKETGPVTGVLDGDDGFGHVNCDMAMDHAIDMAKKKGVGMVTAVNSSHCGALSYFVQKAADEKLIGMAMTHTDSIVVPFGGRTPILGTNPIAYGVPAKHKKPFILDMATSKVAFGKILQAREEGKEIPEGWGVDENGEAVTDPDKVVSLSTFGGPKGYGLSIVVDVFSGLLAGAAFGPHIAKMYNGLDQKRKLGHYVCAINPSFFTDWDTFLEQMDAMIDELQQSPPAVGFERVYVPGEIEQLHEERNKKNGISIARSVYEFLKSR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	337 (321)
Sequences:	2096 (1555)
Seq/√Len:	86.8

ECOLI - ALLD YBIC DLGD
BACSU - YJMC

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
318_R	322_N	3.981	1.00
127_V	163_A	3.693	1.00
71_V	85_D	3.676	1.00
294_Q	310_E	3.352	1.00
84_G	92_N	3.330	1.00
203_G	217_V	3.034	1.00
65_N	85_D	2.970	1.00
205_D	209_E	2.880	1.00
105_K	133_E	2.745	1.00
197_E	212_T	2.685	1.00
152_G	296_S	2.655	1.00
12_K	34_D	2.538	1.00
98_D	129_K	2.499	1.00
328_R	332_E	2.495	1.00
113_T	243_A	2.430	1.00
97_M	130_A	2.394	1.00
213_D	216_K	2.366	1.00
197_E	214_P	2.266	1.00
78_V	107_K	2.263	1.00
131_A	165_G	2.243	1.00
19_L	52_T	2.231	1.00
75_T	103_M	2.196	1.00
20_D	26_E	2.163	1.00
77_P	107_K	2.150	1.00
272_N	275_F	2.145	1.00
45_H	319_N	2.141	1.00
301_G	304_R	2.134	1.00
304_R	314_L	2.094	1.00
317_E	321_K	2.083	1.00
164_Y	234_V	2.052	1.00
68_A	85_D	2.042	1.00
102_D	106_K	2.038	1.00
316_E	320_K	1.991	1.00
168_A	287_D	1.982	1.00
11_A	49_V	1.966	1.00
40_D	45_H	1.949	1.00
120_C	123_L	1.948	1.00
319_N	325_S	1.943	1.00
99_H	102_D	1.933	1.00
41_L	319_N	1.902	1.00
200_E	212_T	1.894	1.00
16_W	30_E	1.890	1.00
148_V	219_S	1.856	1.00
16_W	20_D	1.813	1.00
172_K	317_E	1.807	1.00
176_L	230_G	1.791	1.00
33_A	37_V	1.759	1.00
13_E	17_Q	1.759	1.00
93_C	268_V	1.749	1.00
128_Q	132_D	1.746	1.00
192_R	215_D	1.719	1.00
183_V	202_W	1.707	1.00
101_I	133_E	1.659	1.00
100_A	110_G	1.653	1.00
120_C	139_A	1.651	1.00
134_K	283_L	1.650	1.00
205_D	216_K	1.639	1.00
100_A	270_A	1.610	1.00
73_K	83_D	1.603	1.00
130_A	270_A	1.597	1.00
51_H	186_G	1.596	1.00
8_A	41_L	1.568	1.00
148_V	204_V	1.543	1.00
204_V	219_S	1.541	1.00
165_G	175_I	1.537	1.00
83_D	116_N	1.532	1.00
77_P	103_M	1.530	1.00
105_K	135_L	1.528	1.00
159_T	180_T	1.524	1.00
300_V	304_R	1.510	1.00
65_N	68_A	1.505	1.00
137_G	165_G	1.481	0.99
80_G	110_G	1.476	0.99
80_G	112_V	1.467	0.99
198_I	202_W	1.463	0.99
135_L	273_P	1.460	0.99
147_V	181_S	1.449	0.99
32_V	88_F	1.431	0.99
294_Q	304_R	1.410	0.99
42_R	316_E	1.397	0.99
16_W	26_E	1.395	0.99
237_V	286_M	1.387	0.99
184_A	187_K	1.366	0.99
111_M	269_C	1.350	0.99
97_M	129_K	1.347	0.99
68_A	87_G	1.339	0.99
198_I	217_V	1.336	0.99
94_D	129_K	1.326	0.99
154_T	296_S	1.322	0.99
109_V	269_C	1.309	0.99
162_I	235_V	1.309	0.99
137_G	270_A	1.302	0.99
100_A	112_V	1.300	0.99
31_K	94_D	1.299	0.99
245_A	265_G	1.291	0.99
138_M	269_C	1.290	0.99
86_D	116_N	1.288	0.99
80_G	99_H	1.284	0.98
279_W	283_L	1.280	0.98
99_H	103_M	1.276	0.98
18_K	56_V	1.275	0.98
28_D	91_V	1.274	0.98
97_M	270_A	1.265	0.98
211_V	217_V	1.259	0.98
191_A	198_I	1.257	0.98
117_S	266_H	1.250	0.98
72_F	82_L	1.247	0.98
26_E	30_E	1.244	0.98
246_A	263_K	1.243	0.98
101_I	135_L	1.240	0.98
110_G	270_A	1.232	0.98
291_D	295_Q	1.230	0.98
41_L	320_K	1.222	0.98
47_H	119_H	1.217	0.98
15_V	52_T	1.216	0.98
76_G	275_F	1.216	0.98
24_L	88_F	1.213	0.98
72_F	80_G	1.203	0.98
59_L	66_P	1.194	0.98
111_M	267_Y	1.185	0.97
35_V	90_H	1.183	0.97
17_Q	20_D	1.178	0.97
104_A	110_G	1.165	0.97
83_D	115_V	1.151	0.97
64_I	118_S	1.149	0.97
116_N	263_K	1.144	0.97
239_S	265_G	1.142	0.97
315_H	319_N	1.141	0.97
22_A	56_V	1.139	0.97
203_G	211_V	1.136	0.97
104_A	135_L	1.130	0.97
174_F	233_I	1.123	0.96
15_V	19_L	1.111	0.96
198_I	203_G	1.109	0.96
306_Y	312_E	1.104	0.96
314_L	318_R	1.101	0.96
81_V	115_V	1.093	0.96
46_S	187_K	1.091	0.96
273_P	278_D	1.087	0.96
57_N	61_A	1.081	0.96
166_V	234_V	1.079	0.96
327_A	330_V	1.071	0.95
185_F	218_V	1.068	0.95
12_K	30_E	1.066	0.95
19_L	32_V	1.063	0.95
306_Y	311_I	1.061	0.95
80_G	103_M	1.060	0.95
7_A	10_E	1.059	0.95
80_G	100_A	1.059	0.95
141_T	266_H	1.055	0.95
143_T	146_I	1.050	0.95
101_I	105_K	1.047	0.95
101_I	104_A	1.045	0.95
290_I	294_Q	1.039	0.95
127_V	139_A	1.037	0.94
191_A	196_K	1.036	0.94
306_Y	314_L	1.031	0.94
111_M	271_I	1.027	0.94
79_T	276_F	1.026	0.94
8_A	37_V	1.023	0.94
73_K	81_V	1.019	0.94
70_P	85_D	1.017	0.94
169_K	284_E	1.016	0.94
11_A	324_I	1.014	0.94
28_D	69_Q	1.012	0.94
105_K	272_N	1.012	0.94
157_L	232_S	1.009	0.94
192_R	214_P	1.008	0.94
101_I	130_A	1.005	0.93
15_V	33_A	1.001	0.93
149_P	296_S	0.998	0.93
127_V	165_G	0.998	0.93
95_M	98_D	0.996	0.93
25_N	67_G	0.994	0.93
315_H	318_R	0.985	0.93
178_M	230_G	0.982	0.93
300_V	303_E	0.981	0.93
162_I	231_L	0.979	0.93
15_V	49_V	0.976	0.92
139_A	268_V	0.968	0.92
140_M	235_V	0.967	0.92
188_I	217_V	0.965	0.92
171_K	291_D	0.964	0.92
97_M	137_G	0.960	0.92
287_D	291_D	0.959	0.92
76_G	272_N	0.957	0.92
111_M	276_F	0.952	0.91
326_I	331_Y	0.948	0.91
311_I	315_H	0.943	0.91
69_Q	95_M	0.943	0.91
174_F	290_I	0.942	0.91
169_K	287_D	0.935	0.91
29_A	33_A	0.935	0.91
150_F	229_Y	0.925	0.90
72_F	99_H	0.924	0.90
128_Q	175_I	0.923	0.90
146_I	185_F	0.922	0.90
124_S	127_V	0.922	0.90
197_E	213_D	0.921	0.90
188_I	276_F	0.920	0.90
119_H	186_G	0.919	0.90
11_A	326_I	0.910	0.90
201_G	221_S	0.910	0.90
72_F	95_M	0.907	0.89
22_A	60_L	0.904	0.89
156_I	296_S	0.904	0.89
149_P	229_Y	0.899	0.89
96_A	112_V	0.898	0.89
98_D	102_D	0.894	0.89
38_H	316_E	0.893	0.89
84_G	114_A	0.892	0.89
147_V	180_T	0.890	0.88
317_E	320_K	0.884	0.88
169_K	283_L	0.880	0.88
30_E	34_D	0.871	0.87
200_E	210_A	0.871	0.87
49_V	330_V	0.870	0.87
183_V	187_K	0.863	0.87
8_A	324_I	0.859	0.87
12_K	16_W	0.858	0.87
8_A	320_K	0.852	0.86
71_V	83_D	0.851	0.86
168_A	171_K	0.851	0.86
34_D	125_Y	0.850	0.86
14_L	18_K	0.849	0.86
233_I	289_M	0.846	0.86
120_C	266_H	0.841	0.86
211_V	216_K	0.840	0.85
25_N	28_D	0.837	0.85
325_S	328_R	0.834	0.85
9_E	13_E	0.833	0.85
290_I	307_V	0.827	0.85
104_A	270_A	0.827	0.85
114_A	266_H	0.826	0.84
250_H	292_E	0.824	0.84
273_P	277_T	0.822	0.84
157_L	233_I	0.820	0.84
193_E	333_F	0.813	0.84
143_T	158_G	0.812	0.83
130_A	137_G	0.810	0.83
128_Q	316_E	0.810	0.83
156_I	292_E	0.809	0.83
278_D	281_T	0.806	0.83
70_P	82_L	0.803	0.83
153_R	207_N	0.800	0.83
229_Y	233_I	0.798	0.82
103_M	110_G	0.797	0.82
98_D	133_E	0.795	0.82
42_R	128_Q	0.791	0.82
287_D	290_I	0.789	0.82
236_D	240_G	0.789	0.82
168_A	290_I	0.789	0.82
92_N	114_A	0.782	0.81
209_E	300_V	0.780	0.81
93_C	120_C	0.780	0.81
134_K	279_W	0.771	0.80
70_P	92_N	0.771	0.80
305_V	310_E	0.769	0.80
82_L	112_V	0.764	0.80
280_D	284_E	0.764	0.80
79_T	275_F	0.763	0.79
99_H	112_V	0.763	0.79
100_A	130_A	0.762	0.79
167_P	173_P	0.762	0.79
84_G	117_S	0.761	0.79
201_G	212_T	0.760	0.79
113_T	267_Y	0.760	0.79
178_M	231_L	0.759	0.79
166_V	282_F	0.758	0.79
147_V	219_S	0.758	0.79
180_T	223_F	0.756	0.79
86_D	263_K	0.756	0.79
50_L	189_L	0.753	0.79
170_H	287_D	0.753	0.79
47_H	186_G	0.750	0.78
140_M	267_Y	0.750	0.78
147_V	222_T	0.749	0.78
164_Y	235_V	0.744	0.78
229_Y	307_V	0.743	0.78
192_R	218_V	0.742	0.78
82_L	95_M	0.741	0.77
38_H	125_Y	0.737	0.77
307_V	310_E	0.736	0.77
171_K	287_D	0.736	0.77
277_T	285_Q	0.730	0.76
139_A	266_H	0.730	0.76
182_K	225_G	0.728	0.76
24_L	32_V	0.725	0.76
314_L	317_E	0.722	0.76
147_V	232_S	0.721	0.76
82_L	96_A	0.721	0.76
204_V	221_S	0.720	0.75
152_G	229_Y	0.716	0.75
42_R	122_A	0.716	0.75
31_K	91_V	0.709	0.74
55_Y	121_G	0.707	0.74
97_M	101_I	0.706	0.74
94_D	98_D	0.706	0.74
10_E	13_E	0.706	0.74
51_H	119_H	0.703	0.74
180_T	232_S	0.702	0.74
74_E	106_K	0.700	0.73
22_A	59_L	0.700	0.73
184_A	191_A	0.698	0.73
6_I	331_Y	0.696	0.73
82_L	99_H	0.693	0.73
70_P	95_M	0.692	0.73
190_Q	194_E	0.691	0.72
8_A	12_K	0.687	0.72
76_G	107_K	0.687	0.72
138_M	164_Y	0.686	0.72
157_L	289_M	0.685	0.72
168_A	173_P	0.685	0.72
81_V	113_T	0.684	0.72
310_E	314_L	0.684	0.72
199_P	202_W	0.680	0.71
206_E	216_K	0.677	0.71
43_N	309_G	0.675	0.71
7_A	324_I	0.675	0.71
310_E	313_Q	0.673	0.70
206_E	321_K	0.672	0.70
18_K	52_T	0.669	0.70
132_D	172_K	0.667	0.70
40_D	319_N	0.665	0.70
51_H	189_L	0.664	0.69
135_L	270_A	0.661	0.69
49_V	326_I	0.655	0.68
40_D	49_V	0.653	0.68
62_G	214_P	0.652	0.68
16_W	33_A	0.651	0.68
136_I	238_F	0.650	0.68
182_K	202_W	0.649	0.68
164_Y	238_F	0.649	0.68
34_D	94_D	0.646	0.67
97_M	100_A	0.644	0.67
46_S	119_H	0.642	0.67
114_A	268_V	0.641	0.67
9_E	12_K	0.641	0.67
32_V	91_V	0.641	0.67
27_R	30_E	0.640	0.67
242_L	271_I	0.639	0.66
39_A	121_G	0.639	0.66
182_K	221_S	0.636	0.66
294_Q	307_V	0.635	0.66
127_V	131_A	0.635	0.66
159_T	201_G	0.634	0.66
17_Q	21_G	0.632	0.66
188_I	220_L	0.632	0.66
75_T	107_K	0.630	0.65
223_F	231_L	0.627	0.65
14_L	17_Q	0.625	0.65
55_Y	119_H	0.624	0.65
27_R	69_Q	0.623	0.64
96_A	114_A	0.623	0.64
249_P	292_E	0.622	0.64
36_L	52_T	0.620	0.64
284_E	288_A	0.619	0.64
28_D	67_G	0.619	0.64
142_H	245_A	0.618	0.64
11_A	37_V	0.618	0.64
35_V	122_A	0.617	0.64
180_T	229_Y	0.617	0.64
120_C	312_E	0.617	0.64
330_V	333_F	0.616	0.64
73_K	115_V	0.616	0.64
12_K	320_K	0.615	0.63
235_V	264_L	0.614	0.63
247_F	288_A	0.613	0.63
174_F	308_P	0.604	0.62
53_E	333_F	0.603	0.62
117_S	120_C	0.603	0.62
32_V	90_H	0.603	0.62
195_G	215_D	0.602	0.62
103_M	107_K	0.602	0.62
69_Q	85_D	0.601	0.62
35_V	125_Y	0.600	0.62
30_E	209_E	0.599	0.61
14_L	334_L	0.598	0.61
198_I	212_T	0.595	0.61
65_N	87_G	0.593	0.61
166_V	237_V	0.592	0.61
74_E	103_M	0.590	0.60
189_L	192_R	0.589	0.60
86_D	262_R	0.589	0.60
28_D	88_F	0.587	0.60
188_I	198_I	0.585	0.60
81_V	275_F	0.585	0.60
293_L	305_V	0.585	0.60
160_N	235_V	0.582	0.59
189_L	193_E	0.581	0.59
294_Q	305_V	0.580	0.59
45_H	49_V	0.577	0.59
238_F	267_Y	0.577	0.59
315_H	325_S	0.577	0.59
42_R	312_E	0.573	0.58
143_T	159_T	0.572	0.58
51_H	185_F	0.571	0.58
156_I	293_L	0.567	0.57
75_T	99_H	0.567	0.57
102_D	133_E	0.566	0.57
38_H	42_R	0.565	0.57
35_V	39_A	0.564	0.57
234_V	267_Y	0.564	0.57
329_S	333_F	0.564	0.57
56_V	60_L	0.563	0.57
123_L	266_H	0.562	0.57
75_T	79_T	0.560	0.56
237_V	282_F	0.559	0.56
87_G	90_H	0.558	0.56
95_M	99_H	0.557	0.56
46_S	141_T	0.557	0.56
185_F	203_G	0.556	0.56
30_E	67_G	0.556	0.56
170_H	291_D	0.555	0.56
306_Y	310_E	0.555	0.56
328_R	331_Y	0.555	0.56
171_K	294_Q	0.554	0.56
18_K	22_A	0.552	0.55
84_G	229_Y	0.552	0.55
35_V	126_F	0.551	0.55
134_K	169_K	0.550	0.55
147_V	159_T	0.549	0.55
233_I	293_L	0.548	0.55
45_H	325_S	0.548	0.55
166_V	174_F	0.547	0.55
75_T	80_G	0.546	0.55
136_I	271_I	0.546	0.55
127_V	175_I	0.546	0.55
12_K	37_V	0.546	0.55
286_M	290_I	0.545	0.54
127_V	137_G	0.545	0.54
73_K	103_M	0.541	0.54
206_E	211_V	0.540	0.54
274_S	278_D	0.539	0.54
293_L	307_V	0.539	0.54
50_L	193_E	0.538	0.53
27_R	95_M	0.537	0.53
17_Q	321_K	0.537	0.53
150_F	226_P	0.537	0.53
26_E	69_Q	0.535	0.53
250_H	288_A	0.534	0.53
145_S	252_A	0.532	0.53
65_N	86_D	0.530	0.52
195_G	200_E	0.529	0.52
288_A	291_D	0.528	0.52
308_P	311_I	0.528	0.52
89_G	126_F	0.528	0.52
6_I	10_E	0.527	0.52
117_S	142_H	0.527	0.52
23_G	104_A	0.527	0.52
104_A	108_G	0.525	0.52
147_V	185_F	0.524	0.52
146_I	182_K	0.524	0.52
295_Q	314_L	0.522	0.51
207_N	321_K	0.522	0.51
273_P	279_W	0.522	0.51
58_R	118_S	0.519	0.51
46_S	190_Q	0.519	0.51
72_F	103_M	0.518	0.51
241_L	249_P	0.516	0.50
11_A	282_F	0.516	0.50
8_A	11_A	0.515	0.50
131_A	287_D	0.515	0.50
43_N	222_T	0.514	0.50
12_K	33_A	0.514	0.50
271_I	276_F	0.513	0.50
176_L	234_V	0.511	0.50
140_M	147_V	0.511	0.50
151_G	306_Y	0.509	0.50
193_E	330_V	0.509	0.50
93_C	114_A	0.508	0.49
62_G	324_I	0.507	0.49
78_V	109_V	0.507	0.49
129_K	133_E	0.506	0.49
144_D	185_F	0.506	0.49
52_T	162_I	0.505	0.49
41_L	323_G	0.505	0.49
77_P	106_K	0.504	0.49
47_H	51_H	0.503	0.49
87_G	92_N	0.502	0.49
122_A	142_H	0.500	0.48
213_D	320_K	0.500	0.48

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1vbiA	2	0.9852	100	0.048	Contact Map
4h8aA	2	0.9911	100	0.054	Contact Map
3uoeA	2	0.9852	100	0.058	Contact Map
3i0pA	2	0.9911	100	0.059	Contact Map
1z2iA	2	0.9911	100	0.061	Contact Map
1v9nA	2	0.9525	100	0.064	Contact Map
1nxuA	2	0.9763	100	0.066	Contact Map
2x06A	2	0.9703	100	0.069	Contact Map
1wtjA	2	0.9763	100	0.071	Contact Map
2g8yA	2	0.9822	100	0.075	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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