YFLS - BACSU - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

YFLS - Putative malate transporter YflS

UniProt:	O34726	Sequences: MASEKDAGKQSAVKLVPLLITVAVGLIIWFIPAPSGLEPKAWHLFAIFVATIIGFISKPLPMGAIAIFALAVTALTGTLSIEDTLSGFGNKTIWLIVIAFFISRGFIKTGLGARISYVFVQKFGKKTLGLSYSLLFSDLILSPAIPSNTARAGGIIFPIIRSLSETFGSSPANGTERKIGAFLLKTGFQGNLITSAMFLTAMAANPLIAKLAHDVAGVDLTWTSWAIAAIVPGLVSLIITPLVIYKLYPPEIKETPDAAKIATEKLKEMGPFKKSELSMVIVFLLVLVLWIFGGSFNIDATTTALIGLAVLLLSQVLTWDDIKKEQGAWDTLTWFAALVMLANFLNELGMVSWFSNAMKSSVSGFSWIVAFIILIVVYYYSHYFFASATAHISAMYSAFLAVVVAAGAPPLLAALSLAFISNLFGSTTHYGSGAAPVFFGAGYIPQGKWWSIGFILSIVHIIVWLVIGGLWWKVLGIW	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	478 (411)
Sequences:	8959 (6017)
Seq/√Len:	296.8

ECOLI - YBHI CITT TTDT YFBS ARSB YFJV YBIR
BACSU - YFLS YWRK YDFA
HALSA - Q9HMC9
SULSO - Q980X8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
80_S	83_D	4.671	1.00
126_K	129_G	4.416	1.00
108_K	321_D	4.218	1.00
352_S	356_N	4.110	1.00
286_V	307_G	3.588	1.00
83_D	347_E	3.152	1.00
118_V	122_K	3.096	1.00
265_K	268_E	2.787	1.00
199_L	209_A	2.774	1.00
447_G	451_S	2.764	1.00
445_P	448_K	2.741	1.00
138_D	156_I	2.715	1.00
221_T	224_S	2.714	1.00
282_V	307_G	2.713	1.00
97_V	332_L	2.688	1.00
51_T	69_A	2.622	1.00
366_S	369_V	2.618	1.00
118_V	121_Q	2.536	1.00
277_L	281_I	2.514	1.00
45_F	350_M	2.460	1.00
318_T	321_D	2.430	1.00
42_W	46_A	2.420	1.00
184_L	438_F	2.407	1.00
448_K	451_S	2.383	1.00
101_F	308_L	2.372	1.00
105_G	311_L	2.370	1.00
280_V	284_L	2.359	1.00
288_V	292_F	2.338	1.00
128_L	245_Y	2.294	1.00
53_I	57_S	2.273	1.00
282_V	310_V	2.266	1.00
285_L	289_L	2.256	1.00
320_D	324_K	2.242	1.00
379_Y	457_S	2.226	1.00
353_W	357_A	2.219	1.00
272_F	276_E	2.193	1.00
102_I	286_V	2.189	1.00
139_L	233_G	2.147	1.00
227_I	231_V	2.118	1.00
343_N	347_E	2.078	1.00
378_Y	395_M	2.048	1.00
372_I	465_L	1.988	1.00
114_R	118_V	1.984	1.00
160_I	187_G	1.969	1.00
134_L	160_I	1.965	1.00
272_F	275_S	1.965	1.00
185_K	189_Q	1.957	1.00
47_I	72_V	1.924	1.00
226_A	230_I	1.924	1.00
365_F	369_V	1.920	1.00
274_K	278_S	1.909	1.00
105_G	279_M	1.902	1.00
223_T	227_I	1.899	1.00
458_I	462_I	1.867	1.00
50_A	54_G	1.857	1.00
242_L	246_K	1.835	1.00
197_M	233_G	1.807	1.00
70_L	85_L	1.805	1.00
193_I	236_S	1.800	1.00
292_F	296_F	1.757	1.00
98_I	308_L	1.734	1.00
416_S	468_G	1.733	1.00
236_S	460_H	1.730	1.00
47_I	69_A	1.729	1.00
357_A	360_S	1.728	1.00
264_E	268_E	1.713	1.00
138_D	191_N	1.683	1.00
285_L	310_V	1.665	1.00
278_S	314_S	1.659	1.00
224_S	227_I	1.658	1.00
140_I	144_A	1.655	1.00
376_V	461_I	1.650	1.00
375_I	420_I	1.622	1.00
98_I	304_A	1.620	1.00
54_G	65_I	1.612	1.00
368_I	469_G	1.595	1.00
246_K	249_P	1.590	1.00
281_I	285_L	1.583	1.00
47_I	73_T	1.581	1.00
114_R	276_E	1.576	1.00
54_G	57_S	1.570	1.00
132_Y	241_P	1.555	1.00
466_V	470_L	1.540	1.00
242_L	245_Y	1.528	1.00
73_T	344_F	1.514	1.00
104_R	107_I	1.503	1.00
282_V	311_L	1.501	1.00
47_I	76_T	1.493	1.00
320_D	323_K	1.489	1.00
142_S	194_T	1.478	1.00
135_L	190_G	1.467	1.00
97_V	101_F	1.457	1.00
239_I	459_V	1.456	1.00
41_A	350_M	1.456	1.00
356_N	360_S	1.455	1.00
234_L	238_I	1.449	1.00
450_W	454_F	1.446	1.00
123_F	133_S	1.439	1.00
60_L	65_I	1.437	1.00
429_H	439_F	1.436	1.00
72_V	76_T	1.426	1.00
60_L	64_A	1.408	1.00
88_F	336_A	1.405	1.00
392_I	421_S	1.398	1.00
43_H	76_T	1.378	1.00
427_T	457_S	1.376	1.00
273_K	276_E	1.371	1.00
125_K	129_G	1.368	1.00
188_F	438_F	1.363	1.00
44_L	344_F	1.359	1.00
83_D	86_S	1.353	1.00
190_G	194_T	1.351	1.00
71_A	309_A	1.345	1.00
200_T	222_W	1.343	1.00
243_V	246_K	1.336	1.00
93_I	332_L	1.334	1.00
375_I	416_S	1.334	1.00
416_S	420_I	1.320	1.00
467_I	471_W	1.318	1.00
270_G	276_E	1.312	1.00
197_M	230_I	1.310	1.00
345_L	350_M	1.304	1.00
139_L	237_L	1.301	1.00
104_R	327_G	1.298	1.00
267_K	270_G	1.286	1.00
41_A	353_W	1.285	1.00
346_N	352_S	1.277	1.00
135_L	186_T	1.267	1.00
413_A	417_L	1.260	1.00
231_V	467_I	1.257	1.00
345_L	351_V	1.247	1.00
239_I	463_V	1.246	1.00
289_L	303_T	1.244	1.00
51_T	65_I	1.240	1.00
46_A	50_A	1.238	1.00
266_L	272_F	1.232	1.00
400_L	404_V	1.229	1.00
464_W	468_G	1.225	1.00
289_L	294_G	1.223	1.00
383_Y	388_A	1.223	1.00
43_H	78_T	1.222	1.00
63_G	330_D	1.213	1.00
266_L	269_M	1.211	1.00
384_F	457_S	1.210	1.00
194_T	237_L	1.199	1.00
70_L	337_A	1.199	1.00
401_A	404_V	1.198	1.00
124_G	129_G	1.191	1.00
417_L	421_S	1.190	1.00
408_A	413_A	1.185	1.00
343_N	346_N	1.183	1.00
282_V	314_S	1.174	1.00
447_G	450_W	1.173	1.00
284_L	288_V	1.169	1.00
243_V	247_L	1.167	1.00
243_V	459_V	1.165	1.00
74_A	84_T	1.161	1.00
264_E	267_K	1.151	1.00
61_P	65_I	1.149	1.00
376_V	465_L	1.147	1.00
157_F	437_V	1.146	1.00
44_L	73_T	1.142	1.00
134_L	163_L	1.141	1.00
454_F	458_I	1.135	1.00
230_I	234_L	1.135	1.00
376_V	380_Y	1.135	1.00
289_L	306_I	1.123	1.00
86_S	343_N	1.111	1.00
466_V	469_G	1.110	1.00
461_I	465_L	1.107	1.00
164_S	183_L	1.107	1.00
50_A	72_V	1.106	1.00
49_V	53_I	1.105	1.00
292_F	295_S	1.100	1.00
152_A	191_N	1.094	1.00
356_N	359_K	1.086	1.00
67_I	333_T	1.082	1.00
91_K	301_T	1.080	1.00
224_S	411_L	1.079	1.00
47_I	51_T	1.078	1.00
184_L	444_I	1.077	1.00
45_F	49_V	1.072	1.00
147_S	150_A	1.061	1.00
235_V	463_V	1.056	1.00
91_K	299_D	1.056	1.00
353_W	356_N	1.035	1.00
266_L	270_G	1.025	1.00
323_K	333_T	1.021	1.00
107_I	326_Q	1.019	1.00
104_R	326_Q	1.010	1.00
268_E	272_F	1.009	1.00
278_S	282_V	1.008	1.00
232_P	463_V	1.008	1.00
98_I	305_L	1.000	1.00
380_Y	385_F	0.998	1.00
194_T	201_A	0.997	1.00
299_D	302_T	0.996	1.00
270_G	274_K	0.995	1.00
162_S	166_T	0.994	1.00
48_F	345_L	0.985	1.00
113_A	117_Y	0.981	1.00
248_Y	452_I	0.980	1.00
135_L	237_L	0.979	1.00
240_T	244_I	0.976	1.00
51_T	341_L	0.974	1.00
185_K	452_I	0.970	1.00
289_L	293_G	0.970	1.00
271_P	275_S	0.970	1.00
269_M	272_F	0.967	1.00
399_F	417_L	0.966	1.00
114_R	117_Y	0.964	1.00
371_F	416_S	0.963	1.00
384_F	431_G	0.960	1.00
66_A	337_A	0.957	1.00
143_P	197_M	0.956	1.00
429_H	436_P	0.954	1.00
195_S	202_M	0.949	1.00
413_A	416_S	0.946	1.00
381_S	391_H	0.945	1.00
401_A	405_A	0.943	1.00
148_N	195_S	0.942	1.00
135_L	240_T	0.941	1.00
207_L	396_Y	0.940	1.00
335_F	389_T	0.937	1.00
84_T	340_M	0.935	1.00
275_S	278_S	0.934	1.00
96_I	389_T	0.933	1.00
282_V	290_W	0.933	1.00
384_F	427_T	0.930	1.00
379_Y	461_I	0.930	1.00
87_G	340_M	0.930	1.00
355_S	359_K	0.927	1.00
415_L	419_F	0.926	1.00
396_Y	414_A	0.926	1.00
387_S	390_A	0.925	1.00
278_S	281_I	0.921	1.00
388_A	431_G	0.912	1.00
271_P	276_E	0.911	1.00
260_K	264_E	0.909	1.00
106_F	111_L	0.908	1.00
113_A	265_K	0.907	1.00
48_F	51_T	0.907	1.00
266_L	276_E	0.904	1.00
378_Y	420_I	0.893	1.00
44_L	78_T	0.892	1.00
462_I	466_V	0.892	1.00
137_S	156_I	0.892	1.00
268_E	276_E	0.891	1.00
68_F	71_A	0.890	1.00
369_V	373_I	0.889	1.00
230_I	233_G	0.885	1.00
240_T	456_L	0.883	1.00
448_K	452_I	0.880	1.00
298_I	303_T	0.863	1.00
202_M	205_N	0.863	1.00
427_T	450_W	0.862	1.00
80_S	347_E	0.858	1.00
212_A	414_A	0.857	1.00
151_R	191_N	0.855	1.00
455_I	458_I	0.853	1.00
196_A	233_G	0.850	1.00
362_V	373_I	0.849	1.00
68_F	309_A	0.847	1.00
278_S	316_V	0.846	1.00
321_D	324_K	0.846	1.00
428_T	431_G	0.844	1.00
244_I	452_I	0.843	1.00
418_A	421_S	0.843	1.00
158_P	162_S	0.842	1.00
203_A	389_T	0.840	1.00
147_S	389_T	0.839	1.00
51_T	55_F	0.835	1.00
271_P	274_K	0.835	1.00
272_F	277_L	0.833	1.00
120_V	163_L	0.832	1.00
128_L	241_P	0.831	1.00
95_L	304_A	0.829	1.00
404_V	410_P	0.829	1.00
204_A	389_T	0.828	1.00
277_L	280_V	0.828	1.00
290_W	304_A	0.827	1.00
198_F	201_A	0.827	1.00
268_E	271_P	0.827	1.00
142_S	148_N	0.826	1.00
239_I	243_V	0.826	1.00
193_I	240_T	0.824	1.00
70_L	340_M	0.823	1.00
228_A	467_I	0.822	1.00
383_Y	425_G	0.821	1.00
377_V	381_S	0.821	1.00
238_I	242_L	0.818	1.00
389_T	392_I	0.817	1.00
90_N	210_K	0.816	1.00
78_T	344_F	0.815	1.00
44_L	348_L	0.815	1.00
149_T	202_M	0.815	1.00
427_T	454_F	0.815	1.00
131_S	183_L	0.814	1.00
231_V	235_V	0.814	1.00
79_L	340_M	0.814	1.00
286_V	290_W	0.814	1.00
188_F	435_A	0.812	1.00
308_L	312_L	0.811	1.00
197_M	226_A	0.806	1.00
413_A	420_I	0.805	1.00
199_L	226_A	0.801	1.00
136_F	140_I	0.801	1.00
184_L	187_G	0.800	1.00
328_A	331_T	0.799	1.00
453_G	456_L	0.798	1.00
66_A	70_L	0.797	1.00
74_A	302_T	0.797	1.00
141_L	151_R	0.795	0.99
425_G	431_G	0.795	0.99
383_Y	431_G	0.794	0.99
211_L	396_Y	0.794	0.99
274_K	277_L	0.792	0.99
160_I	183_L	0.788	0.99
257_D	260_K	0.788	0.99
73_T	341_L	0.787	0.99
281_I	284_L	0.787	0.99
195_S	198_F	0.787	0.99
273_K	277_L	0.785	0.99
142_S	195_S	0.784	0.99
380_Y	457_S	0.783	0.99
360_S	363_S	0.783	0.99
279_M	283_F	0.781	0.99
271_P	277_L	0.778	0.99
419_F	464_W	0.775	0.99
68_F	72_V	0.775	0.99
199_L	206_P	0.773	0.99
262_A	265_K	0.773	0.99
282_V	286_V	0.773	0.99
76_T	79_L	0.773	0.99
457_S	460_H	0.773	0.99
397_S	400_L	0.771	0.99
282_V	289_L	0.771	0.99
246_K	250_P	0.770	0.99
389_T	433_G	0.769	0.99
414_A	421_S	0.768	0.99
54_G	68_F	0.759	0.99
409_P	412_L	0.759	0.99
412_L	416_S	0.759	0.99
212_A	219_D	0.757	0.99
208_I	418_A	0.756	0.99
55_F	66_A	0.756	0.99
204_A	432_S	0.755	0.99
269_M	273_K	0.754	0.99
265_K	270_G	0.751	0.99
389_T	432_S	0.751	0.99
62_M	387_S	0.751	0.99
387_S	425_G	0.750	0.99
291_I	294_G	0.750	0.99
387_S	391_H	0.747	0.99
186_T	190_G	0.746	0.99
78_T	348_L	0.745	0.99
367_W	371_F	0.744	0.99
279_M	282_V	0.743	0.99
82_E	86_S	0.738	0.99
48_F	341_L	0.736	0.99
331_T	389_T	0.735	0.99
414_A	417_L	0.735	0.99
87_G	343_N	0.734	0.99
374_L	417_L	0.734	0.99
102_I	311_L	0.734	0.99
237_L	241_P	0.730	0.99
425_G	432_S	0.728	0.99
229_A	419_F	0.725	0.99
400_L	403_V	0.723	0.99
396_Y	400_L	0.723	0.99
192_L	426_S	0.723	0.99
57_S	60_L	0.723	0.99
140_I	143_P	0.720	0.99
370_A	406_A	0.720	0.99
40_K	43_H	0.719	0.99
41_A	45_F	0.718	0.99
109_T	279_M	0.717	0.99
270_G	273_K	0.715	0.99
269_M	276_E	0.713	0.99
244_I	248_Y	0.712	0.99
205_N	225_W	0.712	0.99
373_I	377_V	0.711	0.99
300_A	304_A	0.708	0.99
154_G	437_V	0.706	0.99
357_A	362_V	0.703	0.99
231_V	234_L	0.700	0.99
62_M	66_A	0.699	0.99
232_P	236_S	0.699	0.99
97_V	327_G	0.699	0.99
151_R	156_I	0.697	0.99
104_R	108_K	0.696	0.99
188_F	434_A	0.692	0.99
138_D	190_G	0.689	0.99
161_R	165_E	0.689	0.99
132_Y	136_F	0.687	0.99
266_L	274_K	0.687	0.99
62_M	65_I	0.686	0.99
93_I	336_A	0.684	0.98
169_S	183_L	0.683	0.98
310_V	314_S	0.682	0.98
93_I	335_F	0.681	0.98
200_T	203_A	0.681	0.98
106_F	279_M	0.677	0.98
269_M	274_K	0.677	0.98
81_I	302_T	0.676	0.98
304_A	307_G	0.675	0.98
194_T	198_F	0.674	0.98
186_T	244_I	0.674	0.98
98_I	301_T	0.674	0.98
132_Y	238_I	0.672	0.98
222_W	225_W	0.670	0.98
209_A	219_D	0.669	0.98
208_I	392_I	0.665	0.98
365_F	373_I	0.665	0.98
207_L	389_T	0.664	0.98
118_V	266_L	0.662	0.98
148_N	201_A	0.661	0.98
204_A	392_I	0.661	0.98
70_L	73_T	0.660	0.98
44_L	48_F	0.659	0.98
222_W	226_A	0.659	0.98
55_F	65_I	0.657	0.98
152_A	438_F	0.657	0.98
228_A	472_W	0.656	0.98
339_V	393_S	0.655	0.98
81_I	85_L	0.655	0.98
116_S	163_L	0.651	0.98
94_W	336_A	0.650	0.98
407_G	410_P	0.646	0.98
375_I	464_W	0.646	0.98
157_F	184_L	0.645	0.98
267_K	273_K	0.643	0.98
133_S	210_K	0.642	0.98
290_W	294_G	0.642	0.98
142_S	201_A	0.642	0.98
226_A	231_V	0.641	0.98
204_A	335_F	0.641	0.98
372_I	461_I	0.641	0.98
380_Y	454_F	0.641	0.98
92_T	96_I	0.641	0.98
81_I	84_T	0.639	0.98
372_I	376_V	0.638	0.98
150_A	225_W	0.638	0.98
99_A	286_V	0.637	0.98
61_P	64_A	0.632	0.97
43_H	46_A	0.630	0.97
71_A	306_I	0.630	0.97
188_F	192_L	0.628	0.97
192_L	432_S	0.627	0.97
258_A	262_A	0.623	0.97
108_K	326_Q	0.623	0.97
73_T	78_T	0.623	0.97
264_E	270_G	0.621	0.97
454_F	457_S	0.620	0.97
149_T	387_S	0.620	0.97
455_I	459_V	0.618	0.97
432_S	435_A	0.618	0.97
318_T	322_I	0.617	0.97
80_S	84_T	0.617	0.97
388_A	425_G	0.617	0.97
375_I	461_I	0.616	0.97
61_P	330_D	0.615	0.97
138_D	151_R	0.614	0.97
53_I	59_P	0.614	0.97
67_I	337_A	0.613	0.97
152_A	434_A	0.612	0.97
157_F	438_F	0.612	0.97
149_T	195_S	0.611	0.97
208_I	396_Y	0.611	0.97
209_A	220_L	0.608	0.97
414_A	418_A	0.607	0.97
185_K	453_G	0.606	0.97
368_I	372_I	0.604	0.97
86_S	90_N	0.604	0.97
58_K	439_F	0.604	0.97
258_A	261_I	0.604	0.97
196_A	424_F	0.602	0.97
383_Y	387_S	0.600	0.97
416_S	464_W	0.600	0.97
63_G	70_L	0.599	0.96
415_L	418_A	0.599	0.96
192_L	434_A	0.597	0.96
202_M	432_S	0.597	0.96
171_P	443_Y	0.597	0.96
95_L	147_S	0.596	0.96
99_A	155_I	0.595	0.96
131_S	182_F	0.595	0.96
378_Y	417_L	0.594	0.96
170_S	251_E	0.593	0.96
148_N	202_M	0.593	0.96
114_R	270_G	0.591	0.96
379_Y	384_F	0.591	0.96
41_A	44_L	0.590	0.96
403_V	413_A	0.589	0.96
417_L	420_I	0.589	0.96
370_A	374_L	0.588	0.96
444_I	448_K	0.588	0.96
384_F	425_G	0.586	0.96
138_D	187_G	0.586	0.96
336_A	340_M	0.585	0.96
148_N	203_A	0.585	0.96
96_I	100_F	0.585	0.96
282_V	293_G	0.584	0.96
73_T	76_T	0.584	0.96
187_G	190_G	0.583	0.96
131_S	241_P	0.582	0.96
321_D	326_Q	0.577	0.96
426_S	435_A	0.576	0.96
333_T	337_A	0.576	0.96
423_L	426_S	0.576	0.96
358_M	377_V	0.575	0.96
365_F	370_A	0.573	0.96
193_I	237_L	0.572	0.95
279_M	290_W	0.571	0.95
148_N	200_T	0.570	0.95
101_F	327_G	0.570	0.95
375_I	379_Y	0.570	0.95
309_A	313_L	0.569	0.95
468_G	472_W	0.569	0.95
79_L	347_E	0.568	0.95
243_V	455_I	0.567	0.95
99_A	304_A	0.567	0.95
264_E	274_K	0.567	0.95
197_M	201_A	0.566	0.95
378_Y	421_S	0.565	0.95
386_A	391_H	0.564	0.95
226_A	229_A	0.563	0.95
366_S	373_I	0.563	0.95
306_I	309_A	0.561	0.95
165_E	441_A	0.561	0.95
63_G	323_K	0.560	0.95
235_V	459_V	0.560	0.95
306_I	310_V	0.560	0.95
71_A	305_L	0.559	0.95
345_L	394_A	0.558	0.95
107_I	112_G	0.558	0.95
128_L	132_Y	0.557	0.95
55_F	338_L	0.556	0.95
344_F	348_L	0.555	0.95
54_G	60_L	0.555	0.95
249_P	253_K	0.555	0.95
349_G	352_S	0.550	0.94
208_I	414_A	0.549	0.94
195_S	423_L	0.549	0.94
64_A	68_F	0.549	0.94
103_S	147_S	0.549	0.94
225_W	418_A	0.548	0.94
106_F	109_T	0.548	0.94
384_F	388_A	0.545	0.94
102_I	307_G	0.545	0.94
115_I	141_L	0.545	0.94
235_V	467_I	0.544	0.94
69_A	74_A	0.544	0.94
412_L	469_G	0.542	0.94
266_L	271_P	0.542	0.94
239_I	242_L	0.541	0.94
189_Q	240_T	0.541	0.94
414_A	420_I	0.541	0.94
351_V	386_A	0.540	0.94
148_N	151_R	0.540	0.94
96_I	433_G	0.540	0.94
117_Y	166_T	0.538	0.94
145_I	151_R	0.537	0.94
66_A	93_I	0.536	0.94
458_I	461_I	0.536	0.94
416_S	421_S	0.536	0.94
148_N	192_L	0.534	0.94
289_L	310_V	0.532	0.93
461_I	464_W	0.532	0.93
414_A	419_F	0.531	0.93
368_I	466_V	0.531	0.93
267_K	274_K	0.530	0.93
277_L	288_V	0.530	0.93
207_L	393_S	0.529	0.93
128_L	131_S	0.529	0.93
155_I	339_V	0.528	0.93
345_L	348_L	0.527	0.93
205_N	209_A	0.527	0.93
413_A	421_S	0.523	0.93
381_S	385_F	0.522	0.93
148_N	191_N	0.522	0.93
335_F	425_G	0.521	0.93
69_A	73_T	0.519	0.93
96_I	335_F	0.518	0.92
372_I	469_G	0.517	0.92
452_I	455_I	0.517	0.92
168_G	171_P	0.515	0.92
91_K	210_K	0.515	0.92
204_A	421_S	0.515	0.92
290_W	293_G	0.514	0.92
350_M	353_W	0.514	0.92
149_T	433_G	0.514	0.92
416_S	419_F	0.513	0.92
253_K	256_P	0.513	0.92
95_L	99_A	0.513	0.92
135_L	241_P	0.512	0.92
93_I	150_A	0.512	0.92
233_G	238_I	0.511	0.92
261_I	265_K	0.510	0.92
293_G	299_D	0.509	0.92
195_S	204_A	0.509	0.92
241_P	245_Y	0.507	0.92
84_T	87_G	0.507	0.92
467_I	470_L	0.507	0.92
251_E	254_E	0.506	0.92
77_G	84_T	0.504	0.91
235_V	238_I	0.504	0.91
223_T	226_A	0.504	0.91
106_F	145_I	0.504	0.91
93_I	96_I	0.503	0.91
143_P	198_F	0.502	0.91
147_S	151_R	0.502	0.91
46_A	49_V	0.502	0.91
268_E	274_K	0.501	0.91
403_V	406_A	0.500	0.91
279_M	286_V	0.500	0.91

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4f35D	2	0.8975	100	0.382	Contact Map
4r1iA	2	0.8933	100	0.66	Contact Map
4r0cA	3	0.8745	99.9	0.724	Contact Map
3w9iA	3	0.3347	28.7	0.964	Contact Map
2m20A	2	0.1255	27.8	0.964	Contact Map
3l1lA	2	0.4414	16.8	0.968	Contact Map
3giaA	1	0.4456	15.8	0.968	Contact Map
3tdsE	3	0.4979	14.4	0.969	Contact Map
3kcuA	3	0.4665	14.1	0.969	Contact Map
3ne5A	3	0.3326	14	0.969	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0125 seconds.