YOCH - BACSU - GREMLIN Contacts

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YOCH - Cell wall-binding protein YocH

UniProt:	O34669	Sequences: MKKTIMSFVAVAALSTTAFGAHASAKEITVQKGDTLWGISQKNGVNLKDLKEWNKLTSDKIIAGEKLTISSEETTTTGQYTIKAGDTLSKIAQKFGTTVNNLKVWNNLSSDMIYAGSTLSVKGQATAANTATENAQTNAPQAAPKQEAVQKEQPKQEAVQQQPKQETKAEAETSVNTEEKAVQSNTNNQEASKELTVTATAYTANDGGISGVTATGIDLNKNPNAKVIAVDPNVIPLGSKVYVEGYGEATAADTGGAIKGNKIDVFVPSKSDASNWGVKTVSVKVLN	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	287 (261)
Sequences:	656 (602)
Seq/√Len:	37.3

BACSU - YOCH YABE YORM YUIC

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
217_I	252_A	5.332	1.00
198_T	278_V	4.527	1.00
228_I	241_V	4.400	1.00
147_E	150_Q	4.129	1.00
154_P	158_A	3.572	1.00
158_A	161_Q	3.545	1.00
269_S	272_D	3.403	1.00
154_P	157_E	3.255	1.00
197_V	283_V	3.054	1.00
168_K	173_T	2.751	1.00
206_D	209_I	2.662	1.00
158_A	171_A	2.650	1.00
246_Y	249_A	2.649	1.00
149_V	152_E	2.567	1.00
161_Q	173_T	2.477	1.00
198_T	262_K	2.334	1.00
232_P	235_I	2.242	0.99
158_A	173_T	2.199	0.99
156_Q	161_Q	2.181	0.99
242_Y	284_K	2.100	0.99
160_Q	168_K	2.095	0.99
265_V	276_W	2.047	0.99
77_T	82_I	1.979	0.98
194_E	284_K	1.953	0.98
161_Q	167_T	1.946	0.98
205_N	220_N	1.943	0.98
148_A	152_E	1.926	0.98
270_K	274_S	1.911	0.98
148_A	151_K	1.909	0.98
161_Q	171_A	1.909	0.98
256_G	278_V	1.875	0.98
234_V	261_N	1.871	0.98
220_N	266_F	1.843	0.98
80_Y	83_K	1.777	0.97
214_A	254_T	1.757	0.97
105_W	121_V	1.747	0.97
231_D	260_G	1.705	0.96
265_V	279_K	1.686	0.96
276_W	281_V	1.685	0.96
228_I	243_V	1.684	0.96
206_D	210_S	1.659	0.95
214_A	256_G	1.651	0.95
80_Y	95_F	1.630	0.95
173_T	177_T	1.625	0.95
199_A	202_Y	1.593	0.94
161_Q	168_K	1.573	0.94
28_I	39_I	1.557	0.94
252_A	276_W	1.545	0.93
155_K	168_K	1.542	0.93
85_G	91_I	1.541	0.93
156_Q	172_E	1.527	0.93
225_A	252_A	1.523	0.93
147_E	152_E	1.516	0.93
87_T	113_I	1.481	0.92
157_E	172_E	1.442	0.91
77_T	83_K	1.427	0.90
203_T	209_I	1.413	0.90
192_S	195_L	1.398	0.89
168_K	171_A	1.373	0.88
197_V	228_I	1.363	0.88
166_E	171_A	1.357	0.88
120_S	193_K	1.355	0.88
173_T	176_N	1.343	0.87
191_A	284_K	1.326	0.86
156_Q	173_T	1.309	0.86
246_Y	281_V	1.301	0.85
158_A	166_E	1.293	0.85
154_P	167_T	1.269	0.84
75_T	83_K	1.262	0.84
282_S	285_V	1.261	0.84
199_A	267_V	1.243	0.83
144_P	147_E	1.233	0.82
208_G	211_G	1.229	0.82
119_L	194_E	1.226	0.82
217_I	227_V	1.218	0.81
168_K	172_E	1.216	0.81
189_Q	192_S	1.207	0.81
161_Q	172_E	1.204	0.81
158_A	167_T	1.204	0.81
158_A	170_E	1.199	0.80
249_A	281_V	1.199	0.80
257_A	262_K	1.198	0.80
267_V	273_A	1.172	0.79
196_T	199_A	1.160	0.78
166_E	170_E	1.159	0.78
105_W	109_S	1.153	0.78
229_A	232_P	1.150	0.77
214_A	257_A	1.149	0.77
154_P	173_T	1.149	0.77
204_A	219_L	1.149	0.77
41_Q	44_G	1.144	0.77
169_A	172_E	1.142	0.77
85_G	89_S	1.142	0.77
97_T	267_V	1.142	0.77
155_K	158_A	1.141	0.77
258_I	262_K	1.139	0.77
76_T	81_T	1.139	0.77
127_A	130_T	1.137	0.77
39_I	43_N	1.135	0.76
167_T	171_A	1.134	0.76
194_E	282_S	1.128	0.76
231_D	237_L	1.120	0.75
75_T	82_I	1.118	0.75
39_I	65_E	1.113	0.75
158_A	168_K	1.109	0.75
161_Q	170_E	1.106	0.75
144_P	150_Q	1.100	0.74
239_S	285_V	1.098	0.74
197_V	281_V	1.083	0.73
221_K	226_K	1.074	0.72
76_T	83_K	1.064	0.72
126_T	285_V	1.064	0.72
262_K	278_V	1.059	0.71
231_D	234_V	1.058	0.71
174_S	177_T	1.055	0.71
155_K	161_Q	1.053	0.71
154_P	161_Q	1.040	0.70
193_K	199_A	1.037	0.70
230_V	251_A	1.036	0.70
163_P	168_K	1.033	0.69
240_K	286_L	1.031	0.69
214_A	237_L	1.027	0.69
166_E	173_T	1.026	0.69
246_Y	265_V	1.026	0.69
199_A	246_Y	1.025	0.69
145_K	150_Q	1.022	0.69
137_T	147_E	1.016	0.68
199_A	281_V	1.015	0.68
228_I	265_V	1.015	0.68
256_G	273_A	1.008	0.67
282_S	286_L	1.008	0.67
145_K	152_E	1.004	0.67
270_K	273_A	1.002	0.67
157_E	164_K	1.000	0.67
157_E	163_P	0.999	0.67
162_Q	166_E	0.996	0.67
231_D	245_G	0.992	0.66
194_E	197_V	0.987	0.66
161_Q	169_A	0.983	0.65
240_K	249_A	0.978	0.65
92_A	103_K	0.975	0.65
167_T	173_T	0.974	0.65
172_E	177_T	0.966	0.64
199_A	243_V	0.965	0.64
228_I	263_I	0.962	0.64
219_L	266_F	0.959	0.64
39_I	61_I	0.939	0.62
204_A	266_F	0.938	0.62
170_E	173_T	0.936	0.62
217_I	225_A	0.926	0.61
218_D	268_P	0.925	0.61
208_G	221_K	0.915	0.60
82_I	119_L	0.910	0.59
160_Q	163_P	0.895	0.58
36_L	65_E	0.894	0.58
80_Y	86_D	0.893	0.58
226_K	284_K	0.892	0.58
164_K	167_T	0.889	0.58
34_D	61_I	0.885	0.57
232_P	239_S	0.885	0.57
263_I	273_A	0.880	0.57
42_K	66_K	0.878	0.57
208_G	273_A	0.872	0.56
196_T	282_S	0.864	0.55
196_T	202_Y	0.861	0.55
40_S	57_T	0.859	0.55
217_I	250_T	0.859	0.55
154_P	172_E	0.859	0.55
199_A	265_V	0.853	0.54
154_P	170_E	0.853	0.54
165_Q	168_K	0.852	0.54
245_G	260_G	0.851	0.54
204_A	211_G	0.850	0.54
82_I	91_I	0.847	0.54
231_D	258_I	0.846	0.54
227_V	252_A	0.839	0.53
232_P	236_P	0.836	0.53
39_I	116_G	0.832	0.53
275_N	282_S	0.829	0.52
180_K	185_N	0.827	0.52
91_I	94_K	0.813	0.51
209_I	219_L	0.813	0.51
160_Q	167_T	0.812	0.51
197_V	203_T	0.810	0.51
30_V	34_D	0.807	0.50
159_V	165_Q	0.807	0.50
160_Q	171_A	0.806	0.50
203_T	270_K	0.805	0.50
165_Q	170_E	0.805	0.50
155_K	163_P	0.805	0.50
186_T	189_Q	0.804	0.50
119_L	133_E	0.801	0.50
84_A	280_T	0.801	0.50
195_L	283_V	0.799	0.50
37_W	67_L	0.795	0.49
232_P	251_A	0.790	0.49
40_S	46_N	0.788	0.49
39_I	50_L	0.786	0.49
227_V	266_F	0.786	0.49
176_N	181_A	0.784	0.48
225_A	266_F	0.783	0.48
239_S	250_T	0.783	0.48
213_T	236_P	0.782	0.48
64_G	275_N	0.780	0.48
154_P	160_Q	0.778	0.48
211_G	227_V	0.775	0.48
271_S	274_S	0.770	0.47
159_V	172_E	0.769	0.47
54_N	269_S	0.767	0.47
221_K	276_W	0.762	0.46
35_T	38_G	0.760	0.46
247_G	251_A	0.759	0.46
171_A	174_S	0.758	0.46
115_A	118_T	0.758	0.46
276_W	279_K	0.758	0.46
37_W	58_S	0.756	0.46
136_Q	172_E	0.755	0.46
73_E	86_D	0.754	0.46
157_E	161_Q	0.753	0.46
276_W	280_T	0.752	0.46
221_K	227_V	0.752	0.46
167_T	174_S	0.752	0.46
88_L	103_K	0.748	0.45
121_V	157_E	0.747	0.45
160_Q	173_T	0.747	0.45
209_I	268_P	0.745	0.45
160_Q	172_E	0.741	0.45
225_A	276_W	0.738	0.44
206_D	226_K	0.738	0.44
248_E	286_L	0.738	0.44
237_L	260_G	0.736	0.44
164_K	173_T	0.736	0.44
172_E	176_N	0.735	0.44
197_V	237_L	0.734	0.44
157_E	162_Q	0.733	0.44
260_G	283_V	0.731	0.44
199_A	249_A	0.726	0.43
99_V	104_V	0.725	0.43
230_V	236_P	0.720	0.43
206_D	219_L	0.715	0.42
240_K	248_E	0.713	0.42
158_A	175_V	0.712	0.42
244_E	259_K	0.711	0.42
121_V	127_A	0.711	0.42
144_P	149_V	0.711	0.42
146_Q	149_V	0.710	0.42
227_V	231_D	0.709	0.42
243_V	246_Y	0.704	0.41
203_T	210_S	0.702	0.41
73_E	117_S	0.700	0.41
215_T	232_P	0.699	0.41
243_V	276_W	0.696	0.41
259_K	266_F	0.694	0.41
55_K	121_V	0.693	0.40
160_Q	164_K	0.691	0.40
40_S	103_K	0.686	0.40
272_D	279_K	0.686	0.40
162_Q	285_V	0.686	0.40
106_N	122_K	0.685	0.40
146_Q	150_Q	0.683	0.40
106_N	208_G	0.680	0.39
212_V	262_K	0.679	0.39
230_V	235_I	0.678	0.39
102_L	106_N	0.673	0.39
129_N	133_E	0.673	0.39
237_L	246_Y	0.671	0.39
50_L	54_N	0.670	0.38
96_G	113_I	0.669	0.38
229_A	235_I	0.667	0.38
231_D	236_P	0.664	0.38
220_N	227_V	0.663	0.38
37_W	41_Q	0.661	0.38
91_I	95_F	0.660	0.38
259_K	283_V	0.657	0.37
216_G	230_V	0.653	0.37
170_E	177_T	0.650	0.37
40_S	45_V	0.650	0.37
152_E	155_K	0.648	0.37
33_G	56_L	0.646	0.37
40_S	54_N	0.646	0.37
169_A	173_T	0.638	0.36
64_G	182_V	0.637	0.36
215_T	235_I	0.636	0.36
85_G	94_K	0.635	0.36
231_D	235_I	0.629	0.35
221_K	266_F	0.628	0.35
113_I	205_N	0.626	0.35
226_K	241_V	0.625	0.35
156_Q	168_K	0.622	0.35
165_Q	173_T	0.620	0.34
241_V	249_A	0.620	0.34
159_V	162_Q	0.619	0.34
239_S	249_A	0.619	0.34
227_V	248_E	0.619	0.34
142_A	151_K	0.617	0.34
36_L	241_V	0.617	0.34
262_K	282_S	0.616	0.34
42_K	285_V	0.615	0.34
121_V	263_I	0.613	0.34
26_K	200_T	0.612	0.34
158_A	172_E	0.612	0.34
157_E	169_A	0.609	0.34
34_D	56_L	0.609	0.34
162_Q	167_T	0.609	0.34
165_Q	171_A	0.607	0.33
261_N	275_N	0.606	0.33
235_I	263_I	0.606	0.33
113_I	117_S	0.602	0.33
76_T	80_Y	0.601	0.33
64_G	118_T	0.600	0.33
28_I	65_E	0.600	0.33
107_N	119_L	0.596	0.33
138_N	171_A	0.592	0.32
45_V	224_N	0.591	0.32
67_L	89_S	0.591	0.32
178_E	183_Q	0.591	0.32
192_S	198_T	0.591	0.32
77_T	81_T	0.590	0.32
170_E	174_S	0.588	0.32
234_V	237_L	0.582	0.31
123_G	126_T	0.582	0.31
229_A	236_P	0.579	0.31
203_T	206_D	0.578	0.31
259_K	279_K	0.578	0.31
38_G	121_V	0.577	0.31
86_D	113_I	0.576	0.31
164_K	170_E	0.575	0.31
137_T	150_Q	0.575	0.31
206_D	211_G	0.575	0.31
86_D	91_I	0.575	0.31
229_A	242_Y	0.573	0.31
196_T	280_T	0.572	0.31
53_W	69_I	0.572	0.31
52_E	93_Q	0.568	0.30
159_V	168_K	0.567	0.30
99_V	110_S	0.567	0.30
33_G	36_L	0.566	0.30
153_Q	158_A	0.565	0.30
66_K	114_Y	0.563	0.30
183_Q	187_N	0.563	0.30
243_V	252_A	0.563	0.30
108_L	117_S	0.562	0.30
266_F	284_K	0.561	0.30
176_N	184_S	0.557	0.30
235_I	239_S	0.557	0.30
103_K	124_Q	0.556	0.29
45_V	234_V	0.555	0.29
61_I	96_G	0.555	0.29
221_K	272_D	0.553	0.29
228_I	276_W	0.545	0.29
223_P	235_I	0.544	0.29
113_I	149_V	0.543	0.29
164_K	168_K	0.542	0.28
270_K	286_L	0.540	0.28
113_I	185_N	0.539	0.28
44_G	97_T	0.539	0.28
204_A	210_S	0.538	0.28
162_Q	173_T	0.537	0.28
225_A	240_K	0.537	0.28
116_G	278_V	0.536	0.28
33_G	122_K	0.535	0.28
258_I	261_N	0.534	0.28
202_Y	247_G	0.534	0.28
199_A	276_W	0.534	0.28
27_E	30_V	0.533	0.28
36_L	60_K	0.533	0.28
157_E	174_S	0.532	0.28
236_P	239_S	0.532	0.28
156_Q	167_T	0.531	0.28
40_S	48_K	0.531	0.28
234_V	251_A	0.529	0.28
83_K	132_T	0.526	0.27
225_A	267_V	0.523	0.27
163_P	167_T	0.522	0.27
176_N	185_N	0.520	0.27
227_V	238_G	0.520	0.27
237_L	241_V	0.520	0.27
261_N	280_T	0.518	0.27
207_G	270_K	0.518	0.27
162_Q	165_Q	0.516	0.27
218_D	221_K	0.516	0.27
49_D	53_W	0.516	0.27
50_L	82_I	0.515	0.27
173_T	181_A	0.514	0.26
231_D	238_G	0.512	0.26
260_G	273_A	0.507	0.26
271_S	275_N	0.503	0.26
51_K	72_E	0.503	0.26
79_Q	121_V	0.502	0.26
36_L	113_I	0.501	0.26
85_G	106_N	0.500	0.26
208_G	226_K	0.500	0.26

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4wjtA	2	0.3624	100	0.621	Contact Map
2ae0X	1	0.6969	99.8	0.743	Contact Map
2gu1A	1	0.8118	99.8	0.744	Contact Map
4uz3A	1	0.3449	99.8	0.755	Contact Map
2g5dA	1	0.662	99.8	0.756	Contact Map
4b8vA	2	0.4495	99.8	0.758	Contact Map
3czbA	2	0.7038	99.7	0.76	Contact Map
2pnwA	1	0.6655	99.7	0.763	Contact Map
4xcmA	2	0.7143	99.7	0.77	Contact Map
4ebyA	1	0.4634	99.6	0.789	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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