YBBR - BACSU - GREMLIN Contacts

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YBBR - YbbR-like domain-containing protein YbbR

UniProt:	O34659	Sequences: MDKFLNNRWAVKIIALLFALLLYVAVNSNQAPTPKKPGESFFPTSTTDEATLTDIPVKAYYDDENYVVTGVPQTVNVTIKGSTSAVKKARQTKNFEIYADMEHLKTGTHKVELKAKNVSDGLTISINPSVTTVTIQERTTKSFPVEVEYYNKSKMKKGYSPEQPIVSPKNVQITGSKNVIDNISLVKASVNLENADETIEKEAKVTVYDKDGNALPVDVEPSVIKITVPVTSPSKKVPFKIERTGSLPDGVSIANIESSPSEVTVYGSQDVLDSLEFIDGVSLDLSKINKDSDIEADIPLPDGVKKISPSKVTLHIEVDSEADQKFENVPIKTVGLSSSQNIEFLDPESQAIDVTAKGSPTNINKLKKSDIELYVNVSDLEDGEHSVKLEVNGPQNVTWSLGRKNAKIKLTSKKSNTSTNDNSSNTSGNQDTDKQTNDQKNNQQEDTKNTDKNNNDQNQDGNKDQNQDQDEDESTANSQSSSE	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	483 (394)
Sequences:	688 (611)
Seq/√Len:	30.8

BACSU - YBBR

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
265_V	275_L	6.931	1.00
136_Q	178_N	6.051	1.00
143_F	186_V	4.549	1.00
356_A	366_L	4.334	1.00
335_G	378_S	3.963	1.00
360_P	364_N	3.952	1.00
380_L	385_H	3.930	1.00
206_T	214_A	3.880	1.00
237_V	265_V	3.790	1.00
269_Q	273_D	3.467	1.00
209_D	213_N	3.321	1.00
247_L	285_L	3.303	1.00
186_V	207_V	3.254	1.00
97_I	113_L	3.224	1.00
8_R	12_K	3.201	1.00
247_L	253_I	3.178	1.00
81_G	86_V	3.173	1.00
386_S	405_N	3.072	1.00
207_V	219_V	3.035	1.00
291_D	317_E	2.978	1.00
101_M	111_V	2.921	1.00
188_A	203_A	2.903	1.00
188_A	205_V	2.886	1.00
382_D	412_S	2.832	1.00
180_I	183_I	2.686	1.00
265_V	304_V	2.648	1.00
236_K	262_E	2.622	1.00
322_A	363_I	2.612	1.00
142_S	170_N	2.611	1.00
336_L	342_I	2.581	1.00
240_K	277_F	2.475	0.99
195_A	199_I	2.434	0.99
389_L	406_A	2.388	0.99
148_E	187_K	2.353	0.99
367_K	370_D	2.258	0.99
198_T	227_T	2.195	0.99
77_V	95_F	2.193	0.99
164_P	229_P	2.185	0.98
166_V	226_I	2.160	0.98
387_V	408_I	2.122	0.98
335_G	377_V	2.086	0.98
137_E	177_K	2.062	0.98
104_L	135_I	2.023	0.97
180_I	215_L	2.021	0.97
237_V	275_L	1.995	0.97
283_L	296_A	1.993	0.97
207_V	215_L	1.968	0.97
253_I	285_L	1.927	0.97
288_I	292_S	1.819	0.95
104_L	109_H	1.798	0.95
345_L	409_K	1.771	0.94
237_V	278_I	1.754	0.94
356_A	363_I	1.751	0.94
165_I	229_P	1.729	0.94
79_I	89_A	1.724	0.94
380_L	387_V	1.722	0.94
198_T	229_P	1.698	0.93
143_F	183_I	1.668	0.92
373_L	391_V	1.657	0.92
288_I	318_V	1.654	0.92
384_E	409_K	1.642	0.92
336_L	340_Q	1.618	0.91
243_R	256_I	1.615	0.91
98_Y	114_K	1.612	0.91
99_A	111_V	1.608	0.91
354_V	371_I	1.606	0.91
156_K	196_D	1.595	0.91
373_L	389_L	1.584	0.90
258_S	312_V	1.578	0.90
139_T	177_K	1.571	0.90
145_V	205_V	1.563	0.90
118_V	124_I	1.557	0.90
23_Y	153_S	1.554	0.89
239_F	298_I	1.547	0.89
381_E	410_L	1.532	0.89
248_P	285_L	1.524	0.89
240_K	279_D	1.488	0.87
66_Y	135_I	1.473	0.87
248_P	287_K	1.458	0.86
285_L	288_I	1.449	0.86
173_I	180_I	1.448	0.86
333_T	377_V	1.443	0.86
15_A	19_A	1.417	0.85
340_Q	410_L	1.406	0.84
165_I	227_T	1.400	0.84
202_E	225_K	1.400	0.84
256_I	316_I	1.394	0.84
339_S	342_I	1.393	0.84
336_L	410_L	1.389	0.83
205_V	217_V	1.389	0.83
335_G	376_N	1.381	0.83
238_P	241_I	1.372	0.83
375_V	389_L	1.372	0.83
25_A	205_V	1.370	0.82
31_A	84_S	1.363	0.82
44_T	99_A	1.360	0.82
337_S	377_V	1.359	0.82
186_V	205_V	1.355	0.82
384_E	407_K	1.355	0.82
275_L	304_V	1.343	0.81
382_D	410_L	1.342	0.81
393_G	399_W	1.340	0.81
377_V	410_L	1.335	0.81
325_K	355_T	1.329	0.81
251_V	287_K	1.316	0.80
235_K	272_L	1.312	0.80
301_P	304_V	1.311	0.80
82_S	205_V	1.310	0.80
325_K	353_D	1.309	0.79
333_T	336_L	1.308	0.79
340_Q	412_S	1.301	0.79
377_V	380_L	1.301	0.79
171_V	205_V	1.287	0.78
356_A	371_I	1.283	0.78
175_G	180_I	1.272	0.77
371_I	393_G	1.270	0.77
174_T	220_E	1.264	0.77
253_I	316_I	1.261	0.77
359_S	362_N	1.259	0.77
244_T	284_D	1.251	0.76
251_V	320_S	1.250	0.76
81_G	89_A	1.232	0.75
336_L	377_V	1.223	0.75
42_F	89_A	1.223	0.75
140_T	172_Q	1.202	0.73
388_K	405_N	1.201	0.73
11_V	15_A	1.198	0.73
247_L	251_V	1.198	0.73
173_I	195_A	1.197	0.73
236_K	265_V	1.195	0.73
374_Y	392_N	1.192	0.73
13_I	406_A	1.191	0.73
197_E	270_D	1.181	0.72
327_E	353_D	1.180	0.72
177_K	181_D	1.180	0.72
147_V	190_V	1.174	0.72
171_V	221_P	1.171	0.71
99_A	113_L	1.162	0.71
167_S	225_K	1.159	0.71
236_K	264_T	1.155	0.70
161_P	192_L	1.154	0.70
271_V	304_V	1.151	0.70
287_K	292_S	1.147	0.70
15_A	161_P	1.146	0.70
342_I	410_L	1.143	0.69
86_V	99_A	1.130	0.69
386_S	407_K	1.129	0.68
52_L	95_F	1.122	0.68
259_S	313_T	1.115	0.67
13_I	16_L	1.111	0.67
263_V	298_I	1.107	0.67
17_L	21_L	1.105	0.67
7_N	10_A	1.090	0.66
6_N	97_I	1.073	0.64
386_S	402_G	1.068	0.64
331_I	403_R	1.062	0.64
23_Y	93_K	1.061	0.64
145_V	168_P	1.056	0.63
166_V	224_I	1.054	0.63
182_N	210_K	1.052	0.63
380_L	410_L	1.052	0.63
31_A	278_I	1.048	0.63
179_V	183_I	1.046	0.62
239_F	255_N	1.044	0.62
293_D	313_T	1.044	0.62
377_V	387_V	1.042	0.62
242_E	279_D	1.040	0.62
143_F	208_Y	1.035	0.62
209_D	383_G	1.034	0.62
247_L	318_V	1.033	0.61
38_G	81_G	1.031	0.61
372_E	392_N	1.030	0.61
188_A	226_I	1.027	0.61
162_E	229_P	1.026	0.61
23_Y	89_A	1.025	0.61
316_I	339_S	1.018	0.60
89_A	95_F	1.018	0.60
190_V	228_V	1.017	0.60
342_I	411_T	1.014	0.60
166_V	190_V	1.006	0.59
293_D	315_H	1.004	0.59
2_D	10_A	1.004	0.59
323_D	355_T	0.998	0.59
107_G	288_I	0.992	0.58
82_S	85_A	0.979	0.57
15_A	373_L	0.977	0.57
8_R	178_N	0.976	0.57
303_G	354_V	0.970	0.57
251_V	285_L	0.967	0.56
22_L	26_V	0.965	0.56
374_Y	390_E	0.963	0.56
333_T	342_I	0.962	0.56
108_T	132_T	0.958	0.56
274_S	366_L	0.953	0.55
79_I	86_V	0.952	0.55
45_S	91_Q	0.946	0.55
97_I	126_I	0.940	0.54
334_V	374_Y	0.931	0.53
195_A	230_V	0.929	0.53
65_N	137_E	0.927	0.53
23_Y	176_S	0.927	0.53
140_T	174_T	0.923	0.53
287_K	373_L	0.919	0.52
64_E	137_E	0.918	0.52
50_A	175_G	0.915	0.52
342_I	375_V	0.914	0.52
205_V	314_L	0.911	0.52
281_V	299_P	0.910	0.52
333_T	344_F	0.908	0.52
183_I	207_V	0.906	0.51
212_G	244_T	0.903	0.51
175_G	217_V	0.901	0.51
128_P	221_P	0.898	0.51
200_E	227_T	0.898	0.51
141_K	193_E	0.896	0.51
190_V	203_A	0.895	0.51
304_V	308_S	0.888	0.50
292_S	324_Q	0.885	0.50
79_I	157_K	0.885	0.50
267_G	304_V	0.885	0.50
191_N	265_V	0.884	0.50
147_V	188_A	0.884	0.50
361_T	364_N	0.882	0.50
258_S	314_L	0.879	0.49
200_E	225_K	0.872	0.49
280_G	298_I	0.872	0.49
33_T	166_V	0.869	0.48
24_V	375_V	0.865	0.48
375_V	396_N	0.864	0.48
15_A	188_A	0.863	0.48
205_V	224_I	0.862	0.48
147_V	166_V	0.854	0.47
96_E	116_K	0.851	0.47
212_G	354_V	0.848	0.47
9_W	13_I	0.848	0.47
112_E	116_K	0.844	0.46
110_K	132_T	0.843	0.46
26_V	238_P	0.841	0.46
337_S	379_D	0.837	0.46
182_N	209_D	0.835	0.46
242_E	282_S	0.832	0.45
74_T	186_V	0.830	0.45
221_P	328_N	0.828	0.45
163_Q	229_P	0.825	0.45
328_N	353_D	0.822	0.45
146_E	205_V	0.820	0.45
17_L	255_N	0.818	0.44
75_V	128_P	0.817	0.44
235_K	276_E	0.816	0.44
155_M	192_L	0.816	0.44
304_V	361_T	0.814	0.44
74_T	228_V	0.811	0.44
174_T	263_V	0.810	0.44
231_T	235_K	0.810	0.44
245_G	287_K	0.810	0.44
54_D	275_L	0.809	0.44
183_I	298_I	0.809	0.44
145_V	304_V	0.808	0.44
379_D	385_H	0.805	0.43
273_D	326_F	0.804	0.43
50_A	54_D	0.804	0.43
185_L	335_G	0.797	0.43
275_L	301_P	0.795	0.43
16_L	190_V	0.794	0.42
66_Y	161_P	0.793	0.42
340_Q	377_V	0.792	0.42
331_I	362_N	0.792	0.42
270_D	331_I	0.791	0.42
391_V	399_W	0.788	0.42
86_V	89_A	0.788	0.42
166_V	228_V	0.788	0.42
376_N	390_E	0.784	0.42
358_G	363_I	0.779	0.41
98_Y	366_L	0.778	0.41
162_E	231_T	0.777	0.41
41_F	44_T	0.776	0.41
97_I	227_T	0.776	0.41
101_M	207_V	0.776	0.41
81_G	145_V	0.774	0.41
145_V	227_T	0.770	0.41
24_V	111_V	0.769	0.41
233_P	272_L	0.768	0.40
338_S	351_A	0.765	0.40
31_A	48_D	0.761	0.40
122_L	203_A	0.761	0.40
32_P	44_T	0.759	0.40
367_K	386_S	0.757	0.40
149_Y	154_K	0.756	0.40
23_Y	136_Q	0.756	0.40
157_K	276_E	0.755	0.39
239_F	281_V	0.755	0.39
74_T	214_A	0.754	0.39
295_E	311_K	0.752	0.39
85_A	89_A	0.751	0.39
52_L	278_I	0.750	0.39
15_A	276_E	0.750	0.39
141_K	188_A	0.746	0.39
273_D	395_Q	0.744	0.39
239_F	280_G	0.741	0.38
191_N	211_D	0.741	0.38
239_F	258_S	0.740	0.38
186_V	292_S	0.737	0.38
123_T	200_E	0.737	0.38
173_I	396_N	0.736	0.38
267_G	352_I	0.735	0.38
233_P	266_Y	0.735	0.38
101_M	272_L	0.735	0.38
350_Q	408_I	0.733	0.38
86_V	272_L	0.732	0.38
5_L	25_A	0.729	0.37
331_I	369_S	0.728	0.37
178_N	344_F	0.727	0.37
30_Q	291_D	0.726	0.37
215_L	291_D	0.725	0.37
165_I	278_I	0.724	0.37
247_L	406_A	0.721	0.37
110_K	130_V	0.719	0.37
217_V	242_E	0.717	0.37
68_V	113_L	0.715	0.36
237_V	267_G	0.715	0.36
265_V	272_L	0.715	0.36
42_F	113_L	0.713	0.36
10_A	97_I	0.712	0.36
2_D	6_N	0.710	0.36
165_I	276_E	0.709	0.36
208_Y	214_A	0.708	0.36
116_K	273_D	0.706	0.36
235_K	275_L	0.706	0.36
16_L	135_I	0.705	0.36
326_F	371_I	0.704	0.36
158_G	335_G	0.703	0.36
6_N	285_L	0.702	0.35
14_I	165_I	0.700	0.35
226_I	394_P	0.697	0.35
11_V	207_V	0.696	0.35
396_N	400_S	0.694	0.35
207_V	217_V	0.690	0.35
202_E	223_V	0.690	0.35
187_K	208_Y	0.689	0.35
68_V	118_V	0.688	0.34
394_P	397_V	0.688	0.34
228_V	307_I	0.686	0.34
4_F	198_T	0.686	0.34
142_S	171_V	0.686	0.34
166_V	288_I	0.682	0.34
104_L	111_V	0.682	0.34
298_I	381_E	0.682	0.34
118_V	191_N	0.682	0.34
387_V	410_L	0.682	0.34
184_S	212_G	0.677	0.34
13_I	174_T	0.677	0.34
329_V	377_V	0.673	0.33
271_V	275_L	0.672	0.33
269_Q	290_K	0.672	0.33
120_D	222_S	0.671	0.33
155_M	158_G	0.670	0.33
23_Y	300_L	0.667	0.33
286_S	364_N	0.667	0.33
243_R	247_L	0.665	0.33
95_F	175_G	0.664	0.33
293_D	364_N	0.664	0.33
259_S	263_V	0.664	0.33
188_A	292_S	0.662	0.33
25_A	406_A	0.661	0.33
11_V	320_S	0.660	0.32
42_F	267_G	0.658	0.32
2_D	7_N	0.658	0.32
211_D	363_I	0.657	0.32
77_V	281_V	0.654	0.32
77_V	126_I	0.654	0.32
141_K	222_S	0.653	0.32
293_D	392_N	0.653	0.32
162_E	314_L	0.651	0.32
23_Y	42_F	0.651	0.32
22_L	368_K	0.651	0.32
23_Y	48_D	0.649	0.32
19_A	113_L	0.648	0.32
23_Y	155_M	0.645	0.31
14_I	271_V	0.645	0.31
178_N	250_G	0.642	0.31
22_L	273_D	0.641	0.31
31_A	412_S	0.640	0.31
362_N	397_V	0.640	0.31
101_M	155_M	0.640	0.31
251_V	318_V	0.638	0.31
350_Q	402_G	0.638	0.31
185_L	212_G	0.636	0.31
145_V	297_D	0.634	0.31
276_E	367_K	0.632	0.30
257_E	261_S	0.631	0.30
290_K	312_V	0.630	0.30
338_S	360_P	0.630	0.30
27_N	32_P	0.629	0.30
145_V	171_V	0.629	0.30
286_S	298_I	0.628	0.30
75_V	133_V	0.627	0.30
153_S	190_V	0.627	0.30
32_P	136_Q	0.627	0.30
192_L	195_A	0.627	0.30
46_T	75_V	0.627	0.30
147_V	283_L	0.626	0.30
44_T	111_V	0.625	0.30
183_I	219_V	0.625	0.30
82_S	128_P	0.625	0.30
149_Y	192_L	0.624	0.30
365_K	369_S	0.624	0.30
340_Q	382_D	0.624	0.30
300_L	307_I	0.623	0.30
46_T	49_E	0.622	0.30
7_N	385_H	0.622	0.30
337_S	340_Q	0.621	0.30
33_T	265_V	0.621	0.30
66_Y	104_L	0.619	0.30
109_H	115_A	0.618	0.30
136_Q	176_S	0.618	0.30
12_K	394_P	0.618	0.30
77_V	216_P	0.616	0.29
354_V	367_K	0.615	0.29
223_V	297_D	0.615	0.29
345_L	407_K	0.615	0.29
21_L	191_N	0.613	0.29
265_V	335_G	0.611	0.29
50_A	97_I	0.610	0.29
16_L	310_S	0.610	0.29
186_V	371_I	0.610	0.29
210_K	302_D	0.609	0.29
230_V	397_V	0.608	0.29
297_D	311_K	0.608	0.29
164_P	228_V	0.605	0.29
254_A	319_D	0.605	0.29
109_H	135_I	0.605	0.29
32_P	48_D	0.604	0.29
159_Y	162_E	0.604	0.29
3_K	279_D	0.603	0.29
373_L	387_V	0.602	0.28
92_T	239_F	0.601	0.28
343_E	409_K	0.600	0.28
95_F	128_P	0.598	0.28
84_S	113_L	0.597	0.28
174_T	218_D	0.597	0.28
269_Q	412_S	0.596	0.28
276_E	381_E	0.596	0.28
25_A	66_Y	0.596	0.28
183_I	331_I	0.593	0.28
176_S	374_Y	0.593	0.28
14_I	37_P	0.591	0.28
375_V	407_K	0.591	0.28
113_L	126_I	0.591	0.28
208_Y	213_N	0.590	0.28
271_V	274_S	0.590	0.28
156_K	173_I	0.590	0.28
356_A	397_V	0.589	0.28
20_L	397_V	0.588	0.28
31_A	136_Q	0.586	0.27
383_G	410_L	0.586	0.27
197_E	220_E	0.586	0.27
197_E	283_L	0.584	0.27
171_V	279_D	0.583	0.27
159_Y	226_I	0.583	0.27
8_R	136_Q	0.582	0.27
362_N	396_N	0.580	0.27
223_V	350_Q	0.580	0.27
244_T	282_S	0.577	0.27
9_W	12_K	0.576	0.27
198_T	330_P	0.574	0.27
352_I	360_P	0.574	0.27
9_W	23_Y	0.573	0.27
33_T	176_S	0.573	0.27
100_D	168_P	0.573	0.27
38_G	275_L	0.573	0.27
226_I	341_N	0.572	0.27
145_V	166_V	0.571	0.26
148_E	189_S	0.571	0.26
369_S	395_Q	0.570	0.26
132_T	228_V	0.569	0.26
295_E	313_T	0.568	0.26
141_K	406_A	0.568	0.26
174_T	183_I	0.568	0.26
196_D	367_K	0.567	0.26
192_L	360_P	0.566	0.26
100_D	245_G	0.564	0.26
148_E	283_L	0.563	0.26
105_K	109_H	0.562	0.26
290_K	317_E	0.561	0.26
287_K	361_T	0.561	0.26
341_N	411_T	0.561	0.26
311_K	408_I	0.560	0.26
15_A	94_N	0.560	0.26
324_Q	356_A	0.560	0.26
293_D	309_P	0.559	0.26
50_A	183_I	0.559	0.26
75_V	126_I	0.558	0.26
212_G	395_Q	0.556	0.26
252_S	303_G	0.554	0.25
273_D	365_K	0.552	0.25
357_K	400_S	0.552	0.25
273_D	410_L	0.550	0.25
241_I	258_S	0.550	0.25
120_D	340_Q	0.549	0.25
8_R	215_L	0.549	0.25
173_I	207_V	0.547	0.25
13_I	116_K	0.547	0.25
25_A	149_Y	0.547	0.25
203_A	214_A	0.546	0.25
201_K	227_T	0.546	0.25
214_A	283_L	0.545	0.25
131_T	202_E	0.545	0.25
115_A	175_G	0.544	0.25
259_S	388_K	0.543	0.25
93_K	159_Y	0.543	0.25
331_I	375_V	0.543	0.25
276_E	327_E	0.543	0.25
304_V	311_K	0.542	0.25
29_N	131_T	0.542	0.25
125_S	138_R	0.541	0.25
83_T	87_K	0.540	0.25
81_G	85_A	0.539	0.25
79_I	131_T	0.538	0.24
212_G	339_S	0.538	0.24
344_F	408_I	0.537	0.24
253_I	310_S	0.536	0.24
105_K	279_D	0.535	0.24
115_A	352_I	0.534	0.24
33_T	312_V	0.534	0.24
145_V	224_I	0.534	0.24
23_Y	72_P	0.533	0.24
82_S	174_T	0.532	0.24
332_K	372_E	0.532	0.24
52_L	93_K	0.532	0.24
242_E	408_I	0.531	0.24
100_D	314_L	0.531	0.24
261_S	331_I	0.531	0.24
6_N	79_I	0.531	0.24
17_L	250_G	0.531	0.24
159_Y	233_P	0.531	0.24
23_Y	281_V	0.530	0.24
234_S	266_Y	0.530	0.24
303_G	352_I	0.529	0.24
220_E	373_L	0.529	0.24
357_K	398_T	0.529	0.24
133_V	284_D	0.528	0.24
131_T	323_D	0.527	0.24
173_I	233_P	0.526	0.24
48_D	315_H	0.525	0.24
367_K	405_N	0.524	0.24
113_L	160_S	0.524	0.24
192_L	263_V	0.524	0.24
298_I	379_D	0.523	0.24
9_W	64_E	0.523	0.24
99_A	311_K	0.521	0.23
213_N	271_V	0.521	0.23
47_T	285_L	0.521	0.23
369_S	405_N	0.520	0.23
18_F	75_V	0.520	0.23
33_T	68_V	0.519	0.23
312_V	351_A	0.518	0.23
243_R	253_I	0.517	0.23
3_K	380_L	0.517	0.23
267_G	371_I	0.516	0.23
46_T	101_M	0.516	0.23
5_L	331_I	0.516	0.23
161_P	335_G	0.516	0.23
193_E	318_V	0.516	0.23
284_D	287_K	0.515	0.23
174_T	370_D	0.515	0.23
241_I	283_L	0.515	0.23
285_L	292_S	0.514	0.23
268_S	273_D	0.514	0.23
79_I	354_V	0.512	0.23
52_L	332_K	0.512	0.23
239_F	300_L	0.511	0.23
171_V	342_I	0.511	0.23
316_I	323_D	0.510	0.23
173_I	328_N	0.509	0.23
355_T	406_A	0.509	0.23
281_V	298_I	0.509	0.23
269_Q	318_V	0.509	0.23
54_D	191_N	0.508	0.23
181_D	276_E	0.508	0.23
194_N	384_E	0.508	0.23
200_E	207_V	0.507	0.23
331_I	341_N	0.505	0.23
171_V	241_I	0.505	0.23
31_A	99_A	0.504	0.23
260_P	312_V	0.503	0.22
366_L	371_I	0.503	0.22
81_G	238_P	0.503	0.22
29_N	190_V	0.501	0.22
26_V	190_V	0.501	0.22
190_V	394_P	0.501	0.22
285_L	327_E	0.500	0.22

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4qdyA	2	0.3954	100	0.692	Contact Map
2kq1A	1	0.2422	99.8	0.823	Contact Map
2kxyA	1	0.207	99.6	0.854	Contact Map
2l3uA	1	0.2029	99.6	0.858	Contact Map
3lywA	1	0.176	99.4	0.869	Contact Map
2zjrS	1	0.3416	81.8	0.96	Contact Map
4l3aA	1	0.5735	78.6	0.961	Contact Map
1feuA	1	0.3644	67.2	0.964	Contact Map
1wlhA	2	0.4969	57.1	0.966	Contact Map
2e7mA	1	0.2153	53.7	0.967	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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