YERI - BACSU - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

YERI - Uncharacterized protein YerI

UniProt:	O34640	Sequences: MLDVHKDIKKIFHEEQVLAEAAARYGFSKDQVRFLADAENYVYECMKDNQPYILKITHTIRRSSDYMMGEMEWLRHLAIGGISVAKPLPSLNGKDVEAVPDGNGGSFLLRVYEKAPGQKVDESDWNETLFYELGRYTGSMHSLTKSYKLSNPAFKRQEWDEEEQLKLRKYVPEDQIKVFQQADSLMNELRRLPKSQDNYGLVHADLHHGNFNWDHGKITAFDFDDIGYNWFVNDISILLYNVLWYPVVPYDDKAAFTEEFMTHFMKGYWEENELDPAWLMIIPDFLRLRHMLIYGLLHQMFDLNTIGEEEKEMLAGFRRDIENGTPITAFDFSALV	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	336 (275)
Sequences:	7362 (5696)
Seq/√Len:	343.5

ECOLI - RDOA
BACSU - YERI COTI COTS YSXE YCBJ YUTH
HALSA - Q9HNB3

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
44_E	51_P	3.559	1.00
86_K	113_E	3.535	1.00
88_L	113_E	3.024	1.00
46_M	51_P	2.937	1.00
131_Y	267_G	2.936	1.00
44_E	114_K	2.848	1.00
134_G	267_G	2.807	1.00
127_E	263_H	2.666	1.00
132_E	135_R	2.583	1.00
135_R	267_G	2.559	1.00
188_E	192_L	2.496	1.00
54_L	111_V	2.488	1.00
135_R	270_E	2.454	1.00
139_S	271_E	2.419	1.00
138_G	271_E	2.384	1.00
144_T	149_L	2.356	1.00
53_I	114_K	2.275	1.00
33_R	44_E	2.265	1.00
202_V	229_N	2.222	1.00
135_R	271_E	2.211	1.00
31_Q	46_M	2.203	1.00
51_P	114_K	2.199	1.00
137_T	206_L	2.198	1.00
238_L	264_F	2.092	1.00
212_N	221_F	2.069	1.00
74_L	87_P	2.050	1.00
200_G	231_F	1.981	1.00
133_L	211_F	1.972	1.00
78_A	86_K	1.970	1.00
147_Y	150_S	1.959	1.00
142_S	272_N	1.957	1.00
187_N	191_R	1.928	1.00
136_Y	220_A	1.925	1.00
51_P	116_P	1.872	1.00
131_Y	266_K	1.849	1.00
75_R	89_P	1.844	1.00
131_Y	270_E	1.837	1.00
214_D	217_K	1.783	1.00
18_L	22_A	1.769	1.00
144_T	150_S	1.766	1.00
206_L	220_A	1.759	1.00
144_T	147_Y	1.727	1.00
181_Q	184_S	1.725	1.00
134_G	264_F	1.722	1.00
267_G	270_E	1.710	1.00
45_C	111_V	1.675	1.00
299_Q	303_L	1.661	1.00
115_A	219_T	1.647	1.00
127_E	131_Y	1.616	1.00
269_W	279_L	1.614	1.00
47_K	50_Q	1.611	1.00
183_D	187_N	1.588	1.00
71_M	87_P	1.579	1.00
52_Y	88_L	1.518	1.00
131_Y	135_R	1.510	1.00
142_S	271_E	1.497	1.00
119_K	212_N	1.494	1.00
81_G	139_S	1.494	1.00
68_M	72_E	1.494	1.00
16_Q	19_A	1.476	1.00
33_R	46_M	1.472	1.00
64_S	108_L	1.470	1.00
144_T	148_K	1.460	1.00
135_R	139_S	1.456	1.00
158_E	161_E	1.443	1.00
26_G	91_L	1.442	1.00
138_G	272_N	1.435	1.00
76_H	147_Y	1.431	1.00
262_T	266_K	1.428	1.00
73_W	226_I	1.425	1.00
235_I	265_M	1.400	1.00
145_K	149_L	1.390	1.00
132_E	218_I	1.390	1.00
266_K	270_E	1.358	1.00
175_Q	179_F	1.347	1.00
35_L	53_I	1.346	1.00
141_H	268_Y	1.339	1.00
50_Q	113_E	1.328	1.00
80_G	146_S	1.318	1.00
19_A	23_A	1.312	1.00
163_E	166_K	1.309	1.00
182_A	186_M	1.296	1.00
260_F	263_H	1.291	1.00
145_K	148_K	1.290	1.00
32_V	45_C	1.289	1.00
74_L	223_F	1.288	1.00
235_I	264_F	1.275	1.00
275_D	278_W	1.274	1.00
185_L	189_L	1.273	1.00
89_P	95_D	1.269	1.00
236_S	286_L	1.255	1.00
132_E	217_K	1.251	1.00
76_H	146_S	1.242	1.00
168_R	186_M	1.240	1.00
180_Q	184_S	1.235	1.00
148_K	151_N	1.228	1.00
74_L	85_A	1.221	1.00
263_H	267_G	1.207	1.00
179_F	183_D	1.196	1.00
136_Y	139_S	1.195	1.00
161_E	165_L	1.188	1.00
116_P	214_D	1.187	1.00
153_A	156_R	1.185	1.00
165_L	168_R	1.159	1.00
132_E	136_Y	1.156	1.00
214_D	219_T	1.155	1.00
90_S	94_K	1.154	1.00
145_K	150_S	1.150	1.00
67_M	70_E	1.149	1.00
187_N	190_R	1.148	1.00
184_S	187_N	1.144	1.00
126_N	129_L	1.140	1.00
185_L	188_E	1.131	1.00
186_M	190_R	1.130	1.00
133_L	238_L	1.118	1.00
174_D	178_V	1.111	1.00
131_Y	134_G	1.102	1.00
178_V	182_A	1.100	1.00
175_Q	178_V	1.100	1.00
174_D	177_K	1.094	1.00
198_N	278_W	1.092	1.00
267_G	271_E	1.079	1.00
75_R	87_P	1.073	1.00
140_M	220_A	1.066	1.00
146_S	151_N	1.060	1.00
134_G	138_G	1.046	1.00
90_S	93_G	1.040	1.00
184_S	188_E	1.039	1.00
21_A	111_V	1.038	1.00
56_I	109_L	1.036	1.00
269_W	273_E	1.036	1.00
91_L	96_V	1.036	1.00
20_E	89_P	1.031	1.00
213_W	218_I	1.030	1.00
266_K	269_W	1.023	1.00
128_T	131_Y	1.021	1.00
72_E	75_R	1.016	1.00
293_I	297_L	1.012	1.00
21_A	25_Y	1.008	1.00
52_Y	111_V	1.008	1.00
168_R	172_P	1.004	1.00
131_Y	263_H	1.002	1.00
205_D	210_N	0.999	1.00
17_V	22_A	0.993	1.00
141_H	234_D	0.992	1.00
54_L	109_L	0.991	1.00
145_K	272_N	0.981	1.00
17_V	20_E	0.977	1.00
76_H	143_L	0.977	1.00
156_R	160_D	0.976	1.00
239_L	261_M	0.971	1.00
71_M	95_D	0.970	1.00
115_A	212_N	0.970	1.00
163_E	167_L	0.969	1.00
265_M	269_W	0.967	1.00
71_M	110_R	0.963	1.00
55_K	70_E	0.959	1.00
166_K	169_K	0.958	1.00
75_R	79_I	0.956	1.00
167_L	171_V	0.955	1.00
188_E	284_D	0.955	1.00
263_H	266_K	0.954	1.00
297_L	300_M	0.954	1.00
169_K	172_P	0.953	1.00
82_I	140_M	0.943	1.00
78_A	87_P	0.942	1.00
196_Q	277_A	0.941	1.00
39_E	224_D	0.935	1.00
290_H	293_I	0.932	1.00
40_N	224_D	0.927	1.00
144_T	151_N	0.924	1.00
147_Y	151_N	0.921	1.00
24_R	90_S	0.918	1.00
72_E	147_Y	0.912	1.00
22_A	25_Y	0.911	1.00
42_V	53_I	0.905	1.00
44_E	53_I	0.901	1.00
22_A	28_S	0.894	1.00
156_R	159_W	0.893	1.00
29_K	48_D	0.889	1.00
63_S	66_Y	0.889	1.00
210_N	222_D	0.884	1.00
182_A	185_L	0.884	1.00
296_L	300_M	0.881	1.00
73_W	144_T	0.880	1.00
205_D	222_D	0.880	1.00
198_N	231_F	0.880	1.00
146_S	149_L	0.879	1.00
17_V	21_A	0.878	1.00
133_L	206_L	0.877	1.00
64_S	68_M	0.876	1.00
261_M	283_P	0.875	1.00
198_N	272_N	0.874	1.00
199_Y	228_Y	0.870	1.00
121_D	209_G	0.867	1.00
298_H	302_D	0.864	1.00
30_D	48_D	0.863	1.00
159_W	162_E	0.857	1.00
76_H	80_G	0.856	1.00
231_F	272_N	0.833	1.00
76_H	79_I	0.832	1.00
157_Q	162_E	0.828	1.00
137_T	234_D	0.825	1.00
40_N	55_K	0.822	1.00
156_R	162_E	0.820	1.00
70_E	74_L	0.816	1.00
137_T	141_H	0.812	1.00
30_D	45_C	0.809	1.00
75_R	86_K	0.807	1.00
165_L	169_K	0.804	1.00
176_I	180_Q	0.802	1.00
68_M	90_S	0.800	1.00
27_F	111_V	0.800	1.00
129_L	213_W	0.798	1.00
157_Q	160_D	0.791	1.00
154_F	157_Q	0.787	1.00
41_Y	56_I	0.784	1.00
75_R	78_A	0.783	1.00
136_Y	218_I	0.781	1.00
176_I	179_F	0.780	1.00
20_E	24_R	0.780	1.00
297_L	301_F	0.779	1.00
128_T	132_E	0.777	1.00
165_L	190_R	0.777	1.00
82_I	136_Y	0.777	1.00
130_F	259_E	0.775	1.00
297_L	305_T	0.773	1.00
168_R	190_R	0.770	1.00
139_S	142_S	0.769	1.00
189_L	192_L	0.768	1.00
157_Q	161_E	0.765	1.00
174_D	182_A	0.764	1.00
56_I	101_D	0.763	1.00
175_Q	182_A	0.760	1.00
34_F	41_Y	0.759	1.00
138_G	142_S	0.752	1.00
243_L	261_M	0.746	1.00
237_I	240_Y	0.743	1.00
204_A	227_G	0.741	1.00
153_A	157_Q	0.739	0.99
207_H	240_Y	0.739	0.99
65_D	68_M	0.738	0.99
276_P	280_M	0.737	0.99
163_E	170_Y	0.735	0.99
21_A	24_R	0.729	0.99
232_V	274_L	0.728	0.99
265_M	279_L	0.725	0.99
20_E	23_A	0.724	0.99
166_K	170_Y	0.722	0.99
134_G	271_E	0.722	0.99
154_F	160_D	0.722	0.99
18_L	21_A	0.721	0.99
186_M	288_L	0.719	0.99
198_N	274_L	0.718	0.99
210_N	224_D	0.715	0.99
37_D	42_V	0.715	0.99
280_M	283_P	0.714	0.99
25_Y	89_P	0.711	0.99
167_L	170_Y	0.708	0.99
68_M	94_K	0.707	0.99
156_R	161_E	0.705	0.99
71_M	90_S	0.701	0.99
23_A	91_L	0.697	0.99
128_T	216_G	0.696	0.99
83_S	139_S	0.692	0.99
277_A	280_M	0.690	0.99
75_R	95_D	0.690	0.99
138_G	267_G	0.689	0.99
46_M	50_Q	0.689	0.99
275_D	279_L	0.689	0.99
236_S	285_F	0.688	0.99
71_M	75_R	0.688	0.99
293_I	296_L	0.687	0.99
130_F	260_F	0.687	0.99
99_V	109_L	0.685	0.99
80_G	143_L	0.682	0.99
290_H	294_Y	0.681	0.99
204_A	233_N	0.677	0.99
256_F	259_E	0.675	0.99
294_Y	297_L	0.670	0.99
155_K	158_E	0.668	0.99
154_F	159_W	0.667	0.99
129_L	132_E	0.666	0.99
73_W	201_L	0.665	0.99
190_R	193_P	0.664	0.99
90_S	108_L	0.661	0.99
166_K	172_P	0.656	0.99
203_H	206_L	0.655	0.99
168_R	183_D	0.654	0.99
62_R	65_D	0.652	0.99
42_V	55_K	0.648	0.99
165_L	171_V	0.647	0.99
146_S	150_S	0.647	0.99
39_E	58_H	0.643	0.99
178_V	181_Q	0.640	0.99
274_L	279_L	0.639	0.99
178_V	186_M	0.638	0.99
42_V	207_H	0.637	0.99
127_E	130_F	0.636	0.98
158_E	162_E	0.636	0.98
82_I	143_L	0.634	0.98
153_A	226_I	0.634	0.98
63_S	70_E	0.634	0.98
182_A	291_M	0.633	0.98
87_P	90_S	0.631	0.98
19_A	22_A	0.631	0.98
136_Y	206_L	0.629	0.98
289_R	293_I	0.629	0.98
283_P	287_R	0.628	0.98
35_L	44_E	0.627	0.98
38_A	241_N	0.627	0.98
295_G	298_H	0.626	0.98
16_Q	22_A	0.625	0.98
174_D	179_F	0.625	0.98
120_V	211_F	0.623	0.98
188_E	191_R	0.622	0.98
70_E	224_D	0.620	0.98
285_F	289_R	0.617	0.98
212_N	219_T	0.616	0.98
225_D	289_R	0.610	0.98
200_G	272_N	0.608	0.98
91_L	94_K	0.607	0.98
227_G	233_N	0.605	0.98
96_V	108_L	0.605	0.98
47_K	52_Y	0.604	0.98
164_Q	171_V	0.603	0.98
173_E	178_V	0.603	0.98
301_F	305_T	0.599	0.98
140_M	223_F	0.598	0.98
183_D	186_M	0.598	0.98
87_P	113_E	0.595	0.98
85_A	113_E	0.595	0.98
130_F	263_H	0.594	0.98
239_L	283_P	0.594	0.98
83_S	136_Y	0.592	0.98
94_K	108_L	0.589	0.98
259_E	263_H	0.589	0.98
197_D	230_W	0.588	0.97
145_K	151_N	0.586	0.97
241_N	290_H	0.586	0.97
207_H	241_N	0.585	0.97
62_R	221_F	0.583	0.97
155_K	160_D	0.583	0.97
85_A	115_A	0.581	0.97
57_T	67_M	0.580	0.97
165_L	172_P	0.580	0.97
177_K	180_Q	0.578	0.97
294_Y	298_H	0.576	0.97
53_I	85_A	0.575	0.97
93_G	96_V	0.574	0.97
133_L	137_T	0.573	0.97
177_K	295_G	0.569	0.97
127_E	259_E	0.569	0.97
239_L	282_I	0.564	0.97
90_S	96_V	0.563	0.97
195_S	198_N	0.560	0.97
206_L	211_F	0.557	0.97
25_Y	90_S	0.557	0.97
160_D	163_E	0.552	0.96
28_S	48_D	0.549	0.96
164_Q	168_R	0.549	0.96
257_T	260_F	0.547	0.96
289_R	300_M	0.547	0.96
155_K	159_W	0.547	0.96
137_T	204_A	0.542	0.96
274_L	278_W	0.537	0.96
261_M	265_M	0.536	0.96
57_T	70_E	0.535	0.96
129_L	216_G	0.535	0.96
130_F	242_V	0.534	0.96
189_L	194_K	0.533	0.96
134_G	238_L	0.533	0.96
299_Q	302_D	0.533	0.96
292_L	296_L	0.529	0.95
279_L	283_P	0.528	0.95
197_D	278_W	0.528	0.95
42_V	296_L	0.527	0.95
269_W	276_P	0.525	0.95
281_I	285_F	0.521	0.95
62_R	70_E	0.520	0.95
40_N	70_E	0.520	0.95
82_I	139_S	0.519	0.95
163_E	168_R	0.518	0.95
143_L	147_Y	0.518	0.95
150_S	157_Q	0.517	0.95
153_A	161_E	0.517	0.95
301_F	304_N	0.517	0.95
169_K	173_E	0.517	0.95
213_W	219_T	0.516	0.95
112_Y	221_F	0.515	0.95
134_G	272_N	0.515	0.95
74_L	112_Y	0.514	0.95
236_S	283_P	0.514	0.95
239_L	265_M	0.513	0.95
292_L	295_G	0.513	0.95
225_D	237_I	0.512	0.95
201_L	228_Y	0.512	0.95
39_E	42_V	0.508	0.94
176_I	183_D	0.508	0.94
69_G	226_I	0.507	0.94
192_L	278_W	0.506	0.94
110_R	224_D	0.506	0.94
119_K	221_F	0.505	0.94
132_E	216_G	0.504	0.94
189_L	193_P	0.504	0.94
204_A	229_N	0.503	0.94
199_Y	202_V	0.503	0.94
53_I	112_Y	0.503	0.94
182_A	189_L	0.502	0.94
66_Y	70_E	0.502	0.94
55_K	224_D	0.500	0.94
144_T	201_L	0.500	0.94

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2ppqA	2	0.8958	100	0.385	Contact Map
2q83A	1	0.8869	100	0.403	Contact Map
4pdyA	1	0.8869	100	0.409	Contact Map
1zylA	1	0.9256	100	0.416	Contact Map
4ocvA	1	0.9464	100	0.422	Contact Map
3i1aA	1	0.8929	100	0.461	Contact Map
3dxpA	2	0.9137	100	0.474	Contact Map
3atsA	1	0.9107	100	0.492	Contact Map
3jr1A	1	0.8244	100	0.511	Contact Map
1nw1A	2	0.9137	100	0.522	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.01 seconds.