YJLB - BACSU - GREMLIN Contacts

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YJLB - Uncharacterized protein YjlB

UniProt:	O34612	Sequences: MERETQTYFFPDDGRIPNHPDFPLVVYQNALKDTGLAERIVTRHGWSNSWSGSVFPYHHYHSNTHEVLIALRREAVIQFGGEKGAAIPFKSGDAVVIPAGVGHKKLSSSPDFTVLGAYPGGVQYDMKTGKPNEREEAVKQIKQAALPANDPITGKREPLLEIWVK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	165 (157)
Sequences:	557 (437)
Seq/√Len:	34.9

BACSU - YJLB

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
97_I	101_V	5.560	1.00
54_V	77_I	4.555	1.00
77_I	89_F	4.081	1.00
24_L	79_F	3.981	1.00
38_E	51_S	3.860	1.00
94_A	152_I	3.469	1.00
62_S	125_D	3.322	1.00
71_L	113_T	3.070	1.00
41_V	69_I	3.052	1.00
6_Q	28_Q	2.953	1.00
125_D	140_Q	2.782	1.00
24_L	97_I	2.766	1.00
64_T	122_V	2.515	1.00
76_V	86_A	2.376	1.00
16_I	102_G	2.363	0.99
58_H	102_G	2.306	0.99
129_G	133_E	2.117	0.99
105_K	108_S	2.100	0.99
79_F	97_I	2.097	0.99
153_T	158_P	2.063	0.99
79_F	95_V	1.961	0.98
76_V	88_P	1.944	0.98
70_A	95_V	1.826	0.97
58_H	104_K	1.795	0.96
63_N	124_Y	1.744	0.96
26_V	87_I	1.601	0.93
25_V	96_V	1.583	0.93
34_T	51_S	1.562	0.92
20_P	76_V	1.559	0.92
78_Q	86_A	1.528	0.92
75_A	112_F	1.512	0.91
29_N	44_H	1.498	0.91
78_Q	104_K	1.497	0.91
24_L	101_V	1.471	0.90
37_A	71_L	1.447	0.89
37_A	69_I	1.445	0.89
31_L	37_A	1.430	0.89
69_I	115_L	1.420	0.88
31_L	40_I	1.362	0.86
46_W	147_P	1.341	0.85
26_V	102_G	1.338	0.85
51_S	71_L	1.298	0.83
5_T	25_V	1.271	0.82
41_V	117_A	1.269	0.82
54_V	114_V	1.203	0.78
33_D	107_S	1.166	0.76
16_I	129_G	1.159	0.75
49_S	117_A	1.151	0.75
62_S	127_K	1.149	0.75
37_A	94_A	1.145	0.75
81_G	102_G	1.136	0.74
34_T	37_A	1.128	0.73
28_Q	159_L	1.113	0.72
96_V	132_N	1.112	0.72
44_H	147_P	1.101	0.72
46_W	84_G	1.100	0.72
57_Y	126_M	1.086	0.71
133_E	138_V	1.080	0.70
51_S	113_T	1.075	0.70
60_Y	131_P	1.072	0.70
96_V	159_L	1.059	0.69
19_H	102_G	1.056	0.68
137_A	140_Q	1.055	0.68
79_F	87_I	1.053	0.68
50_W	68_L	1.028	0.66
49_S	124_Y	1.014	0.65
52_G	114_V	1.008	0.65
13_D	83_K	1.008	0.65
47_S	120_G	1.002	0.64
8_Y	85_A	0.995	0.64
30_A	63_N	0.994	0.64
88_P	139_K	0.935	0.59
49_S	52_G	0.926	0.58
55_F	126_M	0.924	0.58
52_G	113_T	0.922	0.58
58_H	78_Q	0.913	0.57
37_A	42_T	0.876	0.54
10_F	13_D	0.874	0.54
29_N	45_G	0.874	0.54
48_N	52_G	0.873	0.54
22_F	146_L	0.871	0.53
156_R	161_E	0.869	0.53
69_I	152_I	0.862	0.53
39_R	43_R	0.853	0.52
5_T	162_I	0.851	0.52
50_W	75_A	0.850	0.52
71_L	115_L	0.844	0.51
69_I	89_F	0.839	0.51
99_A	141_I	0.836	0.50
38_E	68_L	0.834	0.50
84_G	147_P	0.816	0.49
89_F	95_V	0.809	0.48
60_Y	137_A	0.808	0.48
89_F	116_G	0.803	0.48
53_S	105_K	0.803	0.48
15_R	130_K	0.799	0.47
66_E	103_H	0.799	0.47
45_G	120_G	0.794	0.47
50_W	117_A	0.793	0.47
70_A	115_L	0.791	0.47
62_S	124_Y	0.791	0.47
40_I	152_I	0.789	0.46
107_S	110_P	0.781	0.46
63_N	125_D	0.776	0.45
76_V	107_S	0.768	0.45
5_T	32_K	0.764	0.44
36_L	40_I	0.759	0.44
25_V	123_Q	0.756	0.44
88_P	107_S	0.754	0.43
136_E	140_Q	0.750	0.43
8_Y	26_V	0.739	0.42
29_N	72_R	0.738	0.42
82_E	104_K	0.738	0.42
6_Q	85_A	0.737	0.42
74_E	110_P	0.736	0.42
74_E	109_S	0.732	0.42
36_L	96_V	0.727	0.41
82_E	137_A	0.722	0.41
103_H	116_G	0.717	0.40
35_G	110_P	0.711	0.40
76_V	148_A	0.710	0.40
50_W	114_V	0.710	0.40
11_P	90_K	0.709	0.40
159_L	163_W	0.708	0.40
28_Q	138_V	0.704	0.39
52_G	116_G	0.704	0.39
77_I	95_V	0.703	0.39
63_N	122_V	0.701	0.39
31_L	124_Y	0.698	0.39
39_R	148_A	0.698	0.39
10_F	101_V	0.696	0.39
22_F	158_P	0.696	0.39
35_G	42_T	0.694	0.38
54_V	81_G	0.693	0.38
39_R	155_K	0.692	0.38
58_H	81_G	0.685	0.38
55_F	68_L	0.684	0.38
24_L	95_V	0.684	0.38
34_T	125_D	0.675	0.37
157_E	161_E	0.674	0.37
50_W	54_V	0.674	0.37
37_A	57_Y	0.673	0.37
15_R	22_F	0.665	0.36
8_Y	76_V	0.664	0.36
9_F	160_L	0.657	0.36
68_L	75_A	0.655	0.35
7_T	143_Q	0.655	0.35
37_A	152_I	0.654	0.35
50_W	81_G	0.654	0.35
12_D	138_V	0.641	0.34
66_E	116_G	0.639	0.34
153_T	157_E	0.637	0.34
28_Q	90_K	0.636	0.34
45_G	149_N	0.635	0.34
150_D	154_G	0.633	0.34
63_N	94_A	0.632	0.34
63_N	137_A	0.631	0.34
67_V	96_V	0.629	0.33
83_K	152_I	0.625	0.33
11_P	96_V	0.625	0.33
70_A	89_F	0.624	0.33
54_V	112_F	0.623	0.33
48_N	117_A	0.620	0.33
7_T	162_I	0.618	0.33
40_I	162_I	0.615	0.32
124_Y	127_K	0.614	0.32
5_T	27_Y	0.612	0.32
147_P	163_W	0.612	0.32
30_A	72_R	0.611	0.32
30_A	60_Y	0.607	0.32
7_T	26_V	0.607	0.32
24_L	149_N	0.604	0.31
27_Y	74_E	0.604	0.31
74_E	139_K	0.603	0.31
158_P	161_E	0.602	0.31
10_F	102_G	0.595	0.31
81_G	117_A	0.594	0.31
50_W	112_F	0.594	0.31
139_K	142_K	0.594	0.31
12_D	46_W	0.593	0.31
29_N	33_D	0.591	0.31
46_W	159_L	0.584	0.30
86_A	106_L	0.580	0.30
7_T	25_V	0.577	0.30
65_H	100_G	0.576	0.29
35_G	106_L	0.575	0.29
16_I	20_P	0.573	0.29
52_G	58_H	0.569	0.29
26_V	54_V	0.568	0.29
38_E	102_G	0.567	0.29
7_T	132_N	0.565	0.29
127_K	140_Q	0.562	0.28
10_F	85_A	0.559	0.28
54_V	68_L	0.557	0.28
19_H	22_F	0.555	0.28
102_G	138_V	0.550	0.28
133_E	161_E	0.550	0.28
147_P	154_G	0.549	0.28
25_V	139_K	0.548	0.28
156_R	160_L	0.547	0.27
54_V	105_K	0.544	0.27
8_Y	106_L	0.544	0.27
68_L	81_G	0.544	0.27
85_A	90_K	0.543	0.27
96_V	139_K	0.542	0.27
83_K	86_A	0.542	0.27
29_N	90_K	0.540	0.27
141_I	144_A	0.539	0.27
39_R	90_K	0.539	0.27
41_V	115_L	0.531	0.26
69_I	111_D	0.530	0.26
150_D	157_E	0.526	0.26
86_A	129_G	0.525	0.26
74_E	90_K	0.525	0.26
151_P	154_G	0.523	0.26
147_P	150_D	0.522	0.26
8_Y	87_I	0.520	0.26
55_F	113_T	0.520	0.26
127_K	137_A	0.520	0.26
12_D	83_K	0.518	0.26
133_E	136_E	0.515	0.25
51_S	115_L	0.513	0.25
19_H	130_K	0.513	0.25
36_L	39_R	0.511	0.25
34_T	115_L	0.511	0.25
38_E	48_N	0.510	0.25
12_D	106_L	0.509	0.25
15_R	24_L	0.509	0.25
37_A	51_S	0.509	0.25
41_V	114_V	0.505	0.25
86_A	90_K	0.505	0.25
91_S	99_A	0.505	0.25
159_L	162_I	0.502	0.24
120_G	140_Q	0.502	0.24
96_V	162_I	0.501	0.24
75_A	89_F	0.500	0.24

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1juhA	3	0.9636	99.3	0.797	Contact Map
3qacA	3	0.8848	98.9	0.831	Contact Map
4qglA	1	0.7636	98.9	0.832	Contact Map
1vr3A	1	0.8848	98.9	0.835	Contact Map
3d0jA	2	0.7515	98.9	0.835	Contact Map
3c3vA	5	0.8606	98.7	0.842	Contact Map
1zrrA	1	0.8182	98.7	0.843	Contact Map
4lejA	3	0.8788	98.7	0.843	Contact Map
2e9qA	6	0.8667	98.7	0.843	Contact Map
3fz3A	5	0.8848	98.7	0.845	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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