GREMLIN Database
YJLB - Uncharacterized protein YjlB
UniProt: O34612 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 165 (157)
Sequences: 557 (437)
Seq/√Len: 34.9

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
97_I101_V5.5601.00
54_V77_I4.5551.00
77_I89_F4.0811.00
24_L79_F3.9811.00
38_E51_S3.8601.00
94_A152_I3.4691.00
62_S125_D3.3221.00
71_L113_T3.0701.00
41_V69_I3.0521.00
6_Q28_Q2.9531.00
125_D140_Q2.7821.00
24_L97_I2.7661.00
64_T122_V2.5151.00
76_V86_A2.3761.00
16_I102_G2.3630.99
58_H102_G2.3060.99
129_G133_E2.1170.99
105_K108_S2.1000.99
79_F97_I2.0970.99
153_T158_P2.0630.99
79_F95_V1.9610.98
76_V88_P1.9440.98
70_A95_V1.8260.97
58_H104_K1.7950.96
63_N124_Y1.7440.96
26_V87_I1.6010.93
25_V96_V1.5830.93
34_T51_S1.5620.92
20_P76_V1.5590.92
78_Q86_A1.5280.92
75_A112_F1.5120.91
29_N44_H1.4980.91
78_Q104_K1.4970.91
24_L101_V1.4710.90
37_A71_L1.4470.89
37_A69_I1.4450.89
31_L37_A1.4300.89
69_I115_L1.4200.88
31_L40_I1.3620.86
46_W147_P1.3410.85
26_V102_G1.3380.85
51_S71_L1.2980.83
5_T25_V1.2710.82
41_V117_A1.2690.82
54_V114_V1.2030.78
33_D107_S1.1660.76
16_I129_G1.1590.75
49_S117_A1.1510.75
62_S127_K1.1490.75
37_A94_A1.1450.75
81_G102_G1.1360.74
34_T37_A1.1280.73
28_Q159_L1.1130.72
96_V132_N1.1120.72
44_H147_P1.1010.72
46_W84_G1.1000.72
57_Y126_M1.0860.71
133_E138_V1.0800.70
51_S113_T1.0750.70
60_Y131_P1.0720.70
96_V159_L1.0590.69
19_H102_G1.0560.68
137_A140_Q1.0550.68
79_F87_I1.0530.68
50_W68_L1.0280.66
49_S124_Y1.0140.65
52_G114_V1.0080.65
13_D83_K1.0080.65
47_S120_G1.0020.64
8_Y85_A0.9950.64
30_A63_N0.9940.64
88_P139_K0.9350.59
49_S52_G0.9260.58
55_F126_M0.9240.58
52_G113_T0.9220.58
58_H78_Q0.9130.57
37_A42_T0.8760.54
10_F13_D0.8740.54
29_N45_G0.8740.54
48_N52_G0.8730.54
22_F146_L0.8710.53
156_R161_E0.8690.53
69_I152_I0.8620.53
39_R43_R0.8530.52
5_T162_I0.8510.52
50_W75_A0.8500.52
71_L115_L0.8440.51
69_I89_F0.8390.51
99_A141_I0.8360.50
38_E68_L0.8340.50
84_G147_P0.8160.49
89_F95_V0.8090.48
60_Y137_A0.8080.48
89_F116_G0.8030.48
53_S105_K0.8030.48
15_R130_K0.7990.47
66_E103_H0.7990.47
45_G120_G0.7940.47
50_W117_A0.7930.47
70_A115_L0.7910.47
62_S124_Y0.7910.47
40_I152_I0.7890.46
107_S110_P0.7810.46
63_N125_D0.7760.45
76_V107_S0.7680.45
5_T32_K0.7640.44
36_L40_I0.7590.44
25_V123_Q0.7560.44
88_P107_S0.7540.43
136_E140_Q0.7500.43
8_Y26_V0.7390.42
29_N72_R0.7380.42
82_E104_K0.7380.42
6_Q85_A0.7370.42
74_E110_P0.7360.42
74_E109_S0.7320.42
36_L96_V0.7270.41
82_E137_A0.7220.41
103_H116_G0.7170.40
35_G110_P0.7110.40
76_V148_A0.7100.40
50_W114_V0.7100.40
11_P90_K0.7090.40
159_L163_W0.7080.40
28_Q138_V0.7040.39
52_G116_G0.7040.39
77_I95_V0.7030.39
63_N122_V0.7010.39
31_L124_Y0.6980.39
39_R148_A0.6980.39
10_F101_V0.6960.39
22_F158_P0.6960.39
35_G42_T0.6940.38
54_V81_G0.6930.38
39_R155_K0.6920.38
58_H81_G0.6850.38
55_F68_L0.6840.38
24_L95_V0.6840.38
34_T125_D0.6750.37
157_E161_E0.6740.37
50_W54_V0.6740.37
37_A57_Y0.6730.37
15_R22_F0.6650.36
8_Y76_V0.6640.36
9_F160_L0.6570.36
68_L75_A0.6550.35
7_T143_Q0.6550.35
37_A152_I0.6540.35
50_W81_G0.6540.35
12_D138_V0.6410.34
66_E116_G0.6390.34
153_T157_E0.6370.34
28_Q90_K0.6360.34
45_G149_N0.6350.34
150_D154_G0.6330.34
63_N94_A0.6320.34
63_N137_A0.6310.34
67_V96_V0.6290.33
83_K152_I0.6250.33
11_P96_V0.6250.33
70_A89_F0.6240.33
54_V112_F0.6230.33
48_N117_A0.6200.33
7_T162_I0.6180.33
40_I162_I0.6150.32
124_Y127_K0.6140.32
5_T27_Y0.6120.32
147_P163_W0.6120.32
30_A72_R0.6110.32
30_A60_Y0.6070.32
7_T26_V0.6070.32
24_L149_N0.6040.31
27_Y74_E0.6040.31
74_E139_K0.6030.31
158_P161_E0.6020.31
10_F102_G0.5950.31
81_G117_A0.5940.31
50_W112_F0.5940.31
139_K142_K0.5940.31
12_D46_W0.5930.31
29_N33_D0.5910.31
46_W159_L0.5840.30
86_A106_L0.5800.30
7_T25_V0.5770.30
65_H100_G0.5760.29
35_G106_L0.5750.29
16_I20_P0.5730.29
52_G58_H0.5690.29
26_V54_V0.5680.29
38_E102_G0.5670.29
7_T132_N0.5650.29
127_K140_Q0.5620.28
10_F85_A0.5590.28
54_V68_L0.5570.28
19_H22_F0.5550.28
102_G138_V0.5500.28
133_E161_E0.5500.28
147_P154_G0.5490.28
25_V139_K0.5480.28
156_R160_L0.5470.27
54_V105_K0.5440.27
8_Y106_L0.5440.27
68_L81_G0.5440.27
85_A90_K0.5430.27
96_V139_K0.5420.27
83_K86_A0.5420.27
29_N90_K0.5400.27
141_I144_A0.5390.27
39_R90_K0.5390.27
41_V115_L0.5310.26
69_I111_D0.5300.26
150_D157_E0.5260.26
86_A129_G0.5250.26
74_E90_K0.5250.26
151_P154_G0.5230.26
147_P150_D0.5220.26
8_Y87_I0.5200.26
55_F113_T0.5200.26
127_K137_A0.5200.26
12_D83_K0.5180.26
133_E136_E0.5150.25
51_S115_L0.5130.25
19_H130_K0.5130.25
36_L39_R0.5110.25
34_T115_L0.5110.25
38_E48_N0.5100.25
12_D106_L0.5090.25
15_R24_L0.5090.25
37_A51_S0.5090.25
41_V114_V0.5050.25
86_A90_K0.5050.25
91_S99_A0.5050.25
159_L162_I0.5020.24
120_G140_Q0.5020.24
96_V162_I0.5010.24
75_A89_F0.5000.24
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
1juhA 3 0.9636 99.3 0.797 Contact Map
3qacA 3 0.8848 98.9 0.831 Contact Map
4qglA 1 0.7636 98.9 0.832 Contact Map
1vr3A 1 0.8848 98.9 0.835 Contact Map
3d0jA 2 0.7515 98.9 0.835 Contact Map
3c3vA 5 0.8606 98.7 0.842 Contact Map
1zrrA 1 0.8182 98.7 0.843 Contact Map
4lejA 3 0.8788 98.7 0.843 Contact Map
2e9qA 6 0.8667 98.7 0.843 Contact Map
3fz3A 5 0.8848 98.7 0.845 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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