GREMLIN Database
GLNP - Probable glutamine ABC transporter permease protein GlnP
UniProt: O34606 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 218 (203)
Sequences: 19565 (11780)
Seq/√Len: 826.8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
32_L96_T3.3091.00
122_A132_T3.0111.00
150_V210_A2.9591.00
91_A163_A2.9561.00
128_S131_Q2.7971.00
20_L24_Y2.7391.00
187_Y190_P2.7241.00
43_L55_I2.6881.00
175_A195_A2.6241.00
208_L212_R2.3061.00
65_L70_I2.2581.00
40_A104_S2.2501.00
123_R132_T2.2461.00
118_Q140_Q2.2441.00
130_T134_F2.2401.00
119_I132_T2.2141.00
50_V54_L2.1891.00
40_A100_S2.0721.00
50_V53_Q2.0021.00
119_I123_R1.9491.00
173_H177_I1.8991.00
36_F100_S1.8801.00
44_R56_A1.8591.00
28_I92_I1.8481.00
208_L211_R1.7991.00
49_P53_Q1.7831.00
204_Y208_L1.7791.00
21_V24_Y1.7781.00
86_E89_A1.7411.00
179_N188_F1.7111.00
16_W20_L1.7081.00
41_G107_I1.6911.00
24_Y88_T1.6771.00
26_A157_L1.6691.00
74_T94_A1.6561.00
113_S144_R1.6481.00
45_Y112_K1.6461.00
25_V163_A1.6401.00
110_G145_M1.6331.00
59_V104_S1.6111.00
175_A191_I1.6031.00
30_I153_F1.5951.00
17_D20_L1.5591.00
128_S132_T1.5501.00
21_V168_L1.5501.00
33_S99_E1.5231.00
129_Y133_L1.4921.00
209_A212_R1.4751.00
105_E108_R1.4751.00
19_F202_V1.4531.00
14_F17_D1.4491.00
200_F204_Y1.4391.00
40_A55_I1.4141.00
103_L149_I1.4091.00
212_R215_V1.4081.00
123_R129_Y1.4031.00
38_L107_I1.3721.00
174_N177_I1.3661.00
131_Q135_F1.3541.00
127_L131_Q1.3411.00
48_V53_Q1.3331.00
49_P52_S1.3191.00
131_Q134_F1.2991.00
26_A160_T1.2671.00
28_I96_T1.2651.00
35_F39_I1.2521.00
12_L16_W1.2401.00
70_I98_F1.2311.00
32_L92_I1.2201.00
39_I43_L1.2071.00
107_I145_M1.1941.00
24_Y28_I1.1921.00
103_L152_Q1.1861.00
88_T92_I1.1841.00
71_I94_A1.1721.00
173_H176_Q1.1691.00
119_I137_V1.1631.00
179_N192_F1.1591.00
52_S56_A1.1591.00
53_Q57_V1.1581.00
122_A136_I1.1501.00
62_I97_I1.1411.00
48_V51_L1.1381.00
37_G103_L1.1261.00
87_I167_A1.1221.00
14_F174_N1.1221.00
169_P173_H1.1161.00
108_R112_K1.1151.00
71_I163_A1.1091.00
65_L98_F1.1071.00
55_I104_S1.0971.00
129_Y132_T1.0961.00
44_R105_E1.0831.00
54_L57_V1.0831.00
26_A153_F1.0821.00
177_I181_Q1.0761.00
114_I141_A1.0731.00
106_I152_Q1.0691.00
17_D21_V1.0691.00
43_L46_A1.0641.00
54_L58_L1.0631.00
89_A92_I1.0591.00
45_Y111_L1.0481.00
111_L137_V1.0461.00
30_I156_L1.0431.00
176_Q179_N1.0061.00
92_I96_T1.0011.00
60_E204_Y0.9891.00
74_T90_A0.9861.00
88_T168_L0.9831.00
211_R215_V0.9701.00
157_L202_V0.9691.00
13_A17_D0.9651.00
58_L100_S0.9631.00
106_I148_P0.9561.00
122_A127_L0.9541.00
70_I74_T0.9501.00
133_L138_M0.9461.00
29_S96_T0.9441.00
41_G111_L0.9441.00
22_T157_L0.9371.00
178_I191_I0.9351.00
163_A170_E0.9351.00
57_V60_E0.9301.00
67_L159_D0.9251.00
205_S209_A0.9201.00
71_I162_L0.9141.00
43_L51_L0.9051.00
48_V54_L0.9041.00
67_L98_F0.9021.00
116_K120_E0.8991.00
155_S159_D0.8991.00
127_L135_F0.8951.00
62_I101_A0.8921.00
161_S199_Y0.8821.00
89_A93_T0.8781.00
209_A213_L0.8761.00
206_L210_A0.8761.00
72_F76_F0.8761.00
77_A81_I0.8731.00
28_I32_L0.8721.00
42_T133_L0.8651.00
19_F171_L0.8591.00
133_L137_V0.8551.00
38_L138_M0.8411.00
60_E200_F0.8351.00
144_R148_P0.8301.00
117_G121_A0.8251.00
36_F96_T0.8241.00
47_K52_S0.8191.00
212_R216_R0.8161.00
87_I168_L0.8141.00
31_I35_F0.8141.00
34_F149_I0.8041.00
165_V169_P0.8021.00
29_S156_L0.7961.00
99_E152_Q0.7931.00
73_F77_A0.7911.00
157_L206_L0.7881.00
19_F198_M0.7871.00
114_I144_R0.7831.00
29_S95_L0.7791.00
71_I166_I0.7791.00
211_R214_E0.7771.00
163_A168_L0.7741.00
194_L198_M0.7681.00
41_G45_Y0.7651.00
190_P193_L0.7641.00
53_Q56_A0.7631.00
46_A55_I0.7591.00
58_L101_A0.7571.00
201_A205_S0.7551.00
18_G174_N0.7481.00
48_V52_S0.7361.00
91_A166_I0.7341.00
70_I94_A0.7311.00
56_A60_E0.7301.00
33_S103_L0.7291.00
175_A179_N0.7261.00
75_F166_I0.7241.00
27_F31_I0.7221.00
58_L62_I0.7211.00
13_A16_W0.7211.00
44_R47_K0.7211.00
110_G144_R0.7191.00
95_L160_T0.7151.00
75_F90_A0.7141.00
28_I31_I0.7071.00
119_I129_Y0.7041.00
25_V91_A0.6991.00
169_P174_N0.6991.00
99_E159_D0.6961.00
191_I195_A0.6941.00
99_E156_L0.6941.00
46_A129_Y0.6921.00
68_L165_V0.6911.00
23_L27_F0.6881.00
95_L156_L0.6851.00
157_L203_N0.6821.00
116_K119_I0.6761.00
207_S211_R0.6751.00
51_L54_L0.6731.00
21_V170_E0.6671.00
107_I111_L0.6621.00
103_L107_I0.6601.00
111_L141_A0.6591.00
22_T199_Y0.6541.00
21_V88_T0.6541.00
25_V168_L0.6491.00
205_S208_L0.6491.00
28_I88_T0.6471.00
172_I199_Y0.6431.00
43_L54_L0.6421.00
32_L35_F0.6411.00
61_T65_L0.6391.00
146_V213_L0.6381.00
148_P151_S0.6361.00
164_V173_H0.6351.00
172_I195_A0.6341.00
99_E103_L0.6321.00
179_N191_I0.6301.00
85_L89_A0.6281.00
116_K123_R0.6271.00
171_L198_M0.6271.00
22_T26_A0.6251.00
73_F193_L0.6241.00
25_V29_S0.6231.00
96_T100_S0.6201.00
182_S188_F0.6191.00
87_I166_I0.6191.00
24_Y89_A0.6191.00
98_F159_D0.6171.00
82_G85_L0.6171.00
35_F96_T0.6161.00
40_A43_L0.6151.00
36_F40_A0.6121.00
161_S164_V0.6121.00
36_F39_I0.6111.00
205_S212_R0.6081.00
44_R59_V0.6081.00
137_V140_Q0.6061.00
32_L36_F0.6021.00
193_L196_A0.6011.00
210_A213_L0.6011.00
172_I192_F0.5971.00
11_H178_I0.5951.00
44_R52_S0.5911.00
75_F85_L0.5871.00
204_Y207_S0.5861.00
193_L197_L0.5851.00
26_A30_I0.5841.00
75_F87_I0.5831.00
62_I70_I0.5821.00
152_Q155_S0.5811.00
16_W19_F0.5801.00
38_L142_L0.5771.00
57_V61_T0.5751.00
95_L163_A0.5751.00
161_S172_I0.5711.00
15_L198_M0.5691.00
77_A80_E0.5681.00
78_L83_I0.5681.00
128_S135_F0.5661.00
192_F195_A0.5631.00
35_F38_L0.5621.00
127_L132_T0.5581.00
197_L201_A0.5531.00
91_A168_L0.5521.00
189_F193_L0.5521.00
34_F107_I0.5521.00
67_L95_L0.5511.00
189_F192_F0.5491.00
176_Q180_G0.5481.00
37_G104_S0.5481.00
200_F207_S0.5451.00
154_I206_L0.5451.00
63_R105_E0.5421.00
120_E135_F0.5411.00
25_V88_T0.5381.00
178_I182_S0.5371.00
182_S187_Y0.5351.00
192_F196_A0.5351.00
195_A198_M0.5331.00
47_K129_Y0.5321.00
188_F191_I0.5311.00
11_H14_F0.5281.00
44_R104_S0.5271.00
20_L23_L0.5271.00
115_D144_R0.5261.00
25_V160_T0.5241.00
30_I34_F0.5221.00
87_I90_A0.5221.00
200_F203_N0.5171.00
111_L133_L0.5131.00
203_N206_L0.5091.00
45_Y48_V0.5091.00
110_G114_I0.5091.00
109_S148_P0.5091.00
110_G148_P0.5071.00
34_F103_L0.5031.00
175_A178_I0.5021.00
190_P194_L0.5011.00
98_F102_M0.5001.00
203_N207_S0.5001.00
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4ymuD 2 0.9862 100 0.403 Contact Map
3tuiA 2 0.9541 99.9 0.485 Contact Map
2onkC 2 0.9633 99.9 0.497 Contact Map
3rlfF 1 0.9541 99.9 0.504 Contact Map
3d31C 2 0.945 99.9 0.507 Contact Map
4tquM 1 0.9908 99.9 0.532 Contact Map
3rlfG 1 0.9817 99.9 0.54 Contact Map
4tquN 1 0.9771 99.8 0.576 Contact Map
3j8eG 3 0.7064 3.7 0.957 Contact Map
5a63B 1 0.2844 3.1 0.958 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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