THII - BACSU - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

THII - Probable tRNA sulfurtransferase

UniProt:	O34595	Sequences: MNYDHILIRFGEISTKGKNRKSFIERLKQNIRLVLKDYPNLKYFSNRDRMTITLNGEDPEALFPHLKQVFGIQSFSLAIKCDSRLDDIKATALKAIKDQYKPGDTFKVATKRAYKQFELDTNQMNAEIGGHILRNTEGLTVDVRNPDIPLRIEIREEATFLTIRDEKGAGGLPVGSAGKAMLMLSGGFDSPVAGFYAMKRGLSVEAVHFFSPPYTSERAKQKVMDLAKCLSRFGGSMTLHIVPFTKTQELIQKQIPENYTMTATRRLMLQIADRIREKRNGLAIITGESLGQVASQTLESMYAINAVTSTPILRPLIAMDKTEIIEKSREIGTYETSIQPFEDCCTIFTPPSPKTRPKKEKIEHFESFVDFEPYIQEAVDNIETMTLYSEQEANDKFAELF	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	401 (383)
Sequences:	1474 (1009)
Seq/√Len:	51.6

ECOLI - THII
BACSU - THII
HALSA - THII
SULSO - THII

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
182_L	194_G	5.811	1.00
306_A	363_E	5.248	1.00
376_Q	380_D	4.555	1.00
246_K	377_E	4.157	1.00
229_C	332_G	3.703	1.00
83_S	114_Y	3.341	1.00
274_R	376_Q	3.157	1.00
83_S	159_T	3.143	1.00
128_I	152_I	2.920	1.00
110_T	125_N	2.892	1.00
124_M	154_I	2.784	1.00
107_K	143_V	2.776	1.00
370_D	373_P	2.715	1.00
82_D	87_D	2.701	1.00
377_E	381_N	2.701	1.00
180_A	285_I	2.688	1.00
224_M	239_L	2.670	1.00
108_V	132_I	2.662	1.00
68_Q	232_R	2.602	1.00
110_T	124_M	2.537	1.00
328_S	333_T	2.406	1.00
89_K	131_H	2.388	1.00
229_C	336_T	2.359	1.00
301_M	317_I	2.330	1.00
9_R	76_S	2.311	1.00
9_R	74_S	2.216	1.00
183_M	284_I	2.214	1.00
181_M	281_G	2.193	1.00
196_Y	327_K	2.189	1.00
88_I	159_T	2.176	1.00
87_D	90_A	2.157	1.00
43_Y	52_I	2.156	1.00
96_I	150_L	2.133	1.00
300_S	357_P	2.127	1.00
336_T	339_Q	2.123	1.00
224_M	385_M	2.096	1.00
105_T	140_T	2.080	1.00
221_Q	225_D	2.055	1.00
274_R	277_E	2.049	1.00
273_D	308_T	2.047	1.00
92_A	128_I	2.029	1.00
326_E	330_E	2.022	1.00
109_A	149_P	2.020	1.00
180_A	283_A	2.004	1.00
180_A	202_L	2.002	1.00
255_I	263_A	1.983	1.00
299_E	356_R	1.955	1.00
283_A	313_L	1.952	1.00
270_Q	366_E	1.913	0.99
84_R	87_D	1.888	0.99
131_H	135_N	1.887	0.99
327_K	330_E	1.881	0.99
364_H	367_S	1.865	0.99
119_L	127_E	1.853	0.99
220_K	224_M	1.839	0.99
318_A	323_E	1.837	0.99
37_D	65_H	1.829	0.99
250_L	254_Q	1.825	0.99
278_K	380_D	1.817	0.99
242_V	382_I	1.812	0.99
266_R	366_E	1.803	0.99
110_T	154_I	1.797	0.99
93_L	135_N	1.796	0.99
326_E	329_R	1.793	0.99
282_L	299_E	1.789	0.99
85_L	124_M	1.788	0.99
273_D	309_S	1.759	0.99
88_I	128_I	1.737	0.99
259_Y	365_F	1.723	0.99
93_L	131_H	1.720	0.99
365_F	368_F	1.719	0.99
181_M	207_V	1.702	0.99
67_K	75_F	1.694	0.99
38_Y	65_H	1.681	0.99
256_P	365_F	1.636	0.98
26_R	176_S	1.632	0.98
238_T	386_T	1.607	0.98
179_K	205_E	1.605	0.98
87_D	91_T	1.603	0.98
124_M	128_I	1.596	0.98
195_F	233_F	1.576	0.98
49_R	153_E	1.563	0.98
81_C	91_T	1.562	0.98
225_D	339_Q	1.561	0.98
207_V	275_I	1.561	0.98
379_V	382_I	1.527	0.97
42_K	53_T	1.486	0.97
273_D	310_T	1.484	0.97
267_L	371_F	1.480	0.97
24_I	48_D	1.476	0.97
322_T	326_E	1.476	0.97
150_L	161_L	1.464	0.96
8_I	72_I	1.457	0.96
303_A	359_K	1.440	0.96
154_I	159_T	1.434	0.96
99_Q	164_R	1.433	0.96
80_K	158_A	1.430	0.96
66_L	72_I	1.422	0.96
184_L	227_A	1.419	0.96
371_F	375_I	1.412	0.96
188_F	334_Y	1.407	0.95
225_D	228_K	1.404	0.95
303_A	362_I	1.400	0.95
127_E	130_G	1.396	0.95
142_D	145_N	1.386	0.95
27_L	30_N	1.372	0.95
181_M	275_I	1.372	0.95
267_L	369_V	1.369	0.95
250_L	253_K	1.366	0.95
207_V	272_A	1.366	0.95
306_A	359_K	1.365	0.95
373_P	377_E	1.365	0.95
109_A	125_N	1.360	0.95
359_K	362_I	1.360	0.95
276_R	310_T	1.355	0.94
41_L	52_I	1.338	0.94
11_G	73_Q	1.334	0.94
262_T	300_S	1.332	0.94
241_I	385_M	1.325	0.94
334_Y	338_I	1.319	0.94
206_A	237_M	1.308	0.93
197_A	285_I	1.307	0.93
271_I	375_I	1.299	0.93
259_Y	362_I	1.297	0.93
77_L	164_R	1.294	0.93
290_L	317_I	1.285	0.93
205_E	240_H	1.275	0.92
267_L	270_Q	1.267	0.92
8_I	52_I	1.260	0.92
251_I	263_A	1.259	0.92
111_K	153_E	1.251	0.92
172_L	177_A	1.231	0.91
91_T	94_K	1.223	0.91
214_Y	249_E	1.222	0.91
7_L	78_A	1.217	0.91
90_A	94_K	1.217	0.91
277_E	310_T	1.216	0.90
198_M	234_G	1.210	0.90
319_M	327_K	1.204	0.90
31_I	69_V	1.190	0.89
183_M	286_T	1.187	0.89
67_K	166_E	1.184	0.89
194_G	206_A	1.176	0.89
278_K	382_I	1.175	0.89
25_E	29_Q	1.171	0.89
26_R	29_Q	1.171	0.89
229_C	232_R	1.170	0.89
220_K	385_M	1.166	0.89
31_I	43_Y	1.166	0.89
89_K	127_E	1.166	0.89
40_N	57_E	1.164	0.88
220_K	383_E	1.164	0.88
261_M	264_T	1.160	0.88
108_V	150_L	1.159	0.88
28_K	45_S	1.159	0.88
6_I	75_F	1.148	0.88
96_I	132_I	1.128	0.87
283_A	298_L	1.125	0.87
194_G	204_V	1.122	0.87
337_S	340_P	1.115	0.86
267_L	375_I	1.112	0.86
120_D	123_Q	1.108	0.86
359_K	363_E	1.101	0.85
172_L	200_R	1.096	0.85
238_T	384_T	1.094	0.85
270_Q	307_V	1.094	0.85
74_S	165_D	1.088	0.85
108_V	128_I	1.087	0.85
86_D	90_A	1.082	0.84
313_L	317_I	1.075	0.84
126_A	130_G	1.068	0.84
205_E	238_T	1.066	0.84
25_E	45_S	1.062	0.83
272_A	284_I	1.061	0.83
243_P	381_N	1.061	0.83
92_A	132_I	1.051	0.83
246_K	249_E	1.036	0.82
181_M	205_E	1.036	0.82
243_P	246_K	1.034	0.82
322_T	329_R	1.020	0.81
327_K	332_G	1.011	0.80
360_E	363_E	1.011	0.80
104_D	148_I	1.001	0.79
167_K	326_E	1.000	0.79
93_L	136_T	0.997	0.79
183_M	272_A	0.992	0.79
63_F	75_F	0.991	0.79
275_I	382_I	0.989	0.79
9_R	49_R	0.982	0.78
86_D	89_K	0.982	0.78
95_A	161_L	0.981	0.78
269_L	308_T	0.981	0.78
237_M	241_I	0.981	0.78
84_R	89_K	0.978	0.78
77_L	166_E	0.978	0.78
88_I	154_I	0.975	0.78
303_A	357_P	0.974	0.78
242_V	378_A	0.966	0.77
76_S	162_T	0.961	0.77
244_F	264_T	0.960	0.77
205_E	281_G	0.960	0.77
132_I	150_L	0.949	0.76
269_L	288_E	0.940	0.75
273_D	276_R	0.939	0.75
259_Y	354_K	0.936	0.75
275_I	279_R	0.932	0.74
92_A	108_V	0.932	0.74
304_I	313_L	0.926	0.74
169_A	195_F	0.922	0.74
264_T	271_I	0.910	0.73
354_K	357_P	0.910	0.73
5_H	78_A	0.899	0.72
363_E	367_S	0.897	0.72
4_D	54_L	0.897	0.72
246_K	378_A	0.896	0.71
270_Q	375_I	0.895	0.71
230_L	234_G	0.895	0.71
107_K	144_R	0.894	0.71
96_I	148_I	0.893	0.71
65_H	69_V	0.893	0.71
358_K	361_K	0.891	0.71
197_A	318_A	0.889	0.71
107_K	146_P	0.888	0.71
24_I	45_S	0.887	0.71
195_F	327_K	0.882	0.70
274_R	375_I	0.878	0.70
66_L	75_F	0.873	0.69
182_L	206_A	0.872	0.69
262_T	304_I	0.872	0.69
199_K	323_E	0.871	0.69
257_E	351_P	0.861	0.68
89_K	93_L	0.861	0.68
70_F	169_A	0.857	0.68
372_E	376_Q	0.856	0.68
305_N	312_I	0.855	0.68
225_D	336_T	0.853	0.68
35_L	52_I	0.849	0.67
104_D	147_D	0.848	0.67
237_M	240_H	0.845	0.67
245_T	341_F	0.841	0.67
274_R	372_E	0.838	0.66
302_Y	306_A	0.838	0.66
85_L	119_L	0.835	0.66
286_T	316_L	0.835	0.66
31_I	50_M	0.832	0.66
44_F	53_T	0.830	0.66
64_P	67_K	0.830	0.66
14_S	48_D	0.830	0.66
298_L	313_L	0.826	0.65
290_L	313_L	0.823	0.65
227_A	237_M	0.820	0.65
342_E	346_T	0.819	0.65
9_R	162_T	0.819	0.65
63_F	166_E	0.815	0.64
202_L	298_L	0.813	0.64
208_H	344_C	0.810	0.64
274_R	278_K	0.808	0.63
103_G	148_I	0.806	0.63
129_G	147_D	0.805	0.63
204_V	237_M	0.804	0.63
85_L	127_E	0.802	0.63
188_F	338_I	0.801	0.63
132_I	139_L	0.799	0.63
80_K	160_F	0.798	0.62
274_R	379_V	0.794	0.62
219_A	341_F	0.792	0.62
240_H	382_I	0.791	0.62
196_Y	318_A	0.789	0.62
17_G	177_A	0.789	0.62
30_N	174_V	0.788	0.61
155_R	288_E	0.787	0.61
8_I	50_M	0.787	0.61
26_R	355_T	0.785	0.61
10_F	14_S	0.784	0.61
236_S	386_T	0.780	0.61
38_Y	111_K	0.778	0.61
114_Y	117_F	0.777	0.60
93_L	97_K	0.776	0.60
248_Q	343_D	0.774	0.60
276_R	281_G	0.772	0.60
286_T	317_I	0.771	0.60
97_K	136_T	0.768	0.60
238_T	279_R	0.768	0.60
89_K	135_N	0.757	0.58
247_T	378_A	0.757	0.58
180_A	298_L	0.753	0.58
181_M	272_A	0.753	0.58
92_A	161_L	0.752	0.58
205_E	279_R	0.750	0.58
220_K	241_I	0.750	0.58
35_L	62_L	0.748	0.57
260_T	264_T	0.747	0.57
12_E	20_R	0.747	0.57
202_L	290_L	0.745	0.57
50_M	198_M	0.745	0.57
13_I	50_M	0.744	0.57
19_N	23_F	0.739	0.57
215_T	222_K	0.736	0.56
277_E	309_S	0.733	0.56
179_K	203_S	0.730	0.56
95_A	99_Q	0.728	0.55
375_I	379_V	0.725	0.55
97_K	135_N	0.724	0.55
265_R	350_P	0.722	0.55
14_S	24_I	0.719	0.55
264_T	300_S	0.719	0.55
263_A	270_Q	0.718	0.54
10_F	49_R	0.718	0.54
28_K	32_R	0.717	0.54
309_S	312_I	0.716	0.54
240_H	384_T	0.714	0.54
134_R	325_I	0.713	0.54
64_P	232_R	0.711	0.54
203_S	236_S	0.708	0.53
43_Y	50_M	0.708	0.53
86_D	131_H	0.706	0.53
223_V	239_L	0.705	0.53
31_I	66_L	0.705	0.53
112_R	121_T	0.704	0.53
114_Y	156_E	0.704	0.53
58_D	61_A	0.703	0.53
221_Q	224_M	0.703	0.53
12_E	27_L	0.702	0.53
305_N	314_R	0.701	0.53
106_F	141_V	0.699	0.52
239_L	385_M	0.699	0.52
288_E	314_R	0.695	0.52
340_P	345_C	0.694	0.52
19_N	265_R	0.694	0.52
319_M	323_E	0.691	0.52
219_A	340_P	0.690	0.52
51_T	160_F	0.687	0.51
223_V	349_T	0.687	0.51
129_G	141_V	0.686	0.51
222_K	226_L	0.684	0.51
376_Q	379_V	0.684	0.51
45_S	48_D	0.683	0.51
228_K	387_L	0.680	0.50
57_E	84_R	0.679	0.50
175_G	200_R	0.679	0.50
179_K	279_R	0.678	0.50
208_H	219_A	0.678	0.50
244_F	263_A	0.677	0.50
272_A	379_V	0.675	0.50
213_P	343_D	0.674	0.50
7_L	153_E	0.674	0.50
93_L	132_I	0.674	0.50
6_I	63_F	0.673	0.50
265_R	304_I	0.673	0.50
127_E	131_H	0.673	0.50
114_Y	119_L	0.672	0.50
96_I	128_I	0.671	0.50
224_M	241_I	0.671	0.50
303_A	306_A	0.670	0.49
12_E	16_K	0.670	0.49
207_V	242_V	0.669	0.49
252_Q	349_T	0.666	0.49
105_T	133_L	0.664	0.49
265_R	345_C	0.661	0.48
95_A	136_T	0.661	0.48
41_L	62_L	0.661	0.48
340_P	343_D	0.660	0.48
38_Y	55_N	0.659	0.48
83_S	117_F	0.658	0.48
307_V	366_E	0.657	0.48
197_A	202_L	0.655	0.48
224_M	228_K	0.654	0.48
162_T	165_D	0.653	0.48
48_D	349_T	0.651	0.47
88_I	160_F	0.648	0.47
13_I	286_T	0.647	0.47
122_N	125_N	0.645	0.47
286_T	301_M	0.644	0.47
223_V	351_P	0.644	0.47
217_E	221_Q	0.642	0.47
180_A	197_A	0.641	0.46
70_F	331_I	0.641	0.46
157_E	160_F	0.641	0.46
23_F	222_K	0.640	0.46
123_Q	229_C	0.640	0.46
207_V	284_I	0.638	0.46
128_I	131_H	0.638	0.46
271_I	379_V	0.636	0.46
288_E	307_V	0.633	0.46
123_Q	126_A	0.632	0.45
248_Q	348_F	0.631	0.45
301_M	313_L	0.630	0.45
122_N	126_A	0.630	0.45
48_D	162_T	0.629	0.45
10_F	43_Y	0.627	0.45
40_N	55_N	0.626	0.45
262_T	362_I	0.625	0.45
69_V	332_G	0.625	0.45
301_M	308_T	0.624	0.45
6_I	66_L	0.624	0.45
174_V	177_A	0.621	0.44
251_I	255_I	0.619	0.44
285_I	298_L	0.619	0.44
216_S	219_A	0.617	0.44
377_E	380_D	0.617	0.44
300_S	354_K	0.616	0.44
113_A	155_R	0.616	0.44
208_H	283_A	0.614	0.44
275_I	384_T	0.614	0.44
261_M	304_I	0.613	0.44
84_R	164_R	0.611	0.43
269_L	286_T	0.610	0.43
19_N	345_C	0.609	0.43
130_G	134_R	0.609	0.43
243_P	378_A	0.609	0.43
268_M	346_T	0.609	0.43
266_R	270_Q	0.608	0.43
248_Q	346_T	0.607	0.43
288_E	348_F	0.606	0.43
89_K	128_I	0.606	0.43
364_H	368_F	0.606	0.43
92_A	160_F	0.606	0.43
54_L	62_L	0.606	0.43
261_M	265_R	0.605	0.43
260_T	347_I	0.604	0.43
124_M	290_L	0.602	0.42
260_T	349_T	0.602	0.42
61_A	64_P	0.602	0.42
210_F	220_K	0.600	0.42
301_M	311_P	0.600	0.42
42_K	150_L	0.599	0.42
373_P	376_Q	0.599	0.42
134_R	137_E	0.593	0.41
288_E	304_I	0.592	0.41
345_C	348_F	0.592	0.41
266_R	307_V	0.591	0.41
188_F	192_V	0.590	0.41
28_K	48_D	0.589	0.41
82_D	117_F	0.589	0.41
273_D	284_I	0.588	0.41
181_M	194_G	0.588	0.41
198_M	304_I	0.587	0.41
107_K	348_F	0.584	0.41
269_L	312_I	0.584	0.41
7_L	223_V	0.583	0.40
191_P	337_S	0.581	0.40
288_E	305_N	0.581	0.40
216_S	353_P	0.580	0.40
233_F	331_I	0.578	0.40
208_H	349_T	0.578	0.40
227_A	230_L	0.576	0.40
180_A	204_V	0.575	0.40
151_R	165_D	0.574	0.40
252_Q	260_T	0.574	0.40
136_T	140_T	0.574	0.40
335_E	339_Q	0.573	0.39
61_A	65_H	0.572	0.39
323_E	326_E	0.571	0.39
349_T	353_P	0.570	0.39
65_H	280_N	0.569	0.39
273_D	277_E	0.568	0.39
224_M	387_L	0.566	0.39
105_T	146_P	0.566	0.39
27_L	200_R	0.565	0.39
109_A	143_V	0.564	0.39
325_I	341_F	0.564	0.39
177_A	291_G	0.562	0.38
213_P	219_A	0.561	0.38
191_P	333_T	0.561	0.38
264_T	346_T	0.561	0.38
186_G	222_K	0.561	0.38
285_I	318_A	0.560	0.38
225_D	284_I	0.559	0.38
23_F	115_K	0.559	0.38
15_T	281_G	0.559	0.38
113_A	153_E	0.558	0.38
14_S	20_R	0.555	0.38
9_R	155_R	0.555	0.38
108_V	129_G	0.555	0.38
96_I	108_V	0.554	0.38
313_L	316_L	0.553	0.38
198_M	267_L	0.553	0.38
4_D	79_I	0.552	0.37
294_A	350_P	0.552	0.37
81_C	161_L	0.551	0.37
130_G	133_L	0.549	0.37
254_Q	272_A	0.549	0.37
361_K	365_F	0.548	0.37
265_R	343_D	0.547	0.37
94_K	98_D	0.547	0.37
46_N	160_F	0.546	0.37
240_H	279_R	0.545	0.37
179_K	238_T	0.545	0.37
19_N	343_D	0.545	0.37
284_I	310_T	0.543	0.37
100_Y	138_G	0.543	0.37
195_F	331_I	0.542	0.36
214_Y	219_A	0.541	0.36
248_Q	342_E	0.541	0.36
96_I	99_Q	0.541	0.36
86_D	284_I	0.540	0.36
302_Y	363_E	0.540	0.36
218_R	221_Q	0.540	0.36
177_A	301_M	0.539	0.36
279_R	382_I	0.538	0.36
93_L	379_V	0.538	0.36
50_M	304_I	0.538	0.36
103_G	139_L	0.538	0.36
66_L	78_A	0.537	0.36
261_M	269_L	0.536	0.36
211_S	248_Q	0.535	0.36
11_G	14_S	0.535	0.36
43_Y	153_E	0.535	0.36
19_N	222_K	0.535	0.36
64_P	147_D	0.534	0.36
48_D	73_Q	0.532	0.35
278_K	379_V	0.532	0.35
92_A	150_L	0.532	0.35
151_R	162_T	0.531	0.35
194_G	230_L	0.531	0.35
11_G	350_P	0.531	0.35
10_F	212_P	0.530	0.35
216_S	341_F	0.530	0.35
111_K	125_N	0.530	0.35
21_K	25_E	0.529	0.35
195_F	259_Y	0.528	0.35
72_I	169_A	0.528	0.35
25_E	32_R	0.527	0.35
257_E	349_T	0.527	0.35
214_Y	245_T	0.527	0.35
217_E	220_K	0.525	0.35
264_T	349_T	0.523	0.35
245_T	264_T	0.523	0.35
19_N	248_Q	0.522	0.35
268_M	344_C	0.522	0.35
34_V	69_V	0.522	0.35
212_P	348_F	0.520	0.34
110_T	128_I	0.519	0.34
223_V	336_T	0.519	0.34
70_F	155_R	0.519	0.34
213_P	265_R	0.519	0.34
142_D	146_P	0.518	0.34
344_C	349_T	0.518	0.34
208_H	346_T	0.518	0.34
193_A	197_A	0.518	0.34
176_S	351_P	0.517	0.34
73_Q	322_T	0.517	0.34
35_L	39_P	0.517	0.34
222_K	343_D	0.516	0.34
162_T	349_T	0.516	0.34
204_V	386_T	0.515	0.34
19_N	117_F	0.515	0.34
382_I	386_T	0.514	0.34
109_A	122_N	0.513	0.34
117_F	233_F	0.512	0.34
282_L	298_L	0.511	0.34
81_C	159_T	0.511	0.34
19_N	348_F	0.509	0.33
60_E	94_K	0.509	0.33
277_E	306_A	0.509	0.33
105_T	147_D	0.508	0.33
328_S	334_Y	0.508	0.33
10_F	13_I	0.507	0.33
108_V	195_F	0.506	0.33
219_A	245_T	0.506	0.33
88_I	92_A	0.505	0.33
118_E	123_Q	0.505	0.33
245_T	348_F	0.504	0.33
242_V	275_I	0.504	0.33
7_L	160_F	0.504	0.33
23_F	215_T	0.503	0.33
196_Y	199_K	0.503	0.33
149_P	199_K	0.503	0.33
115_K	222_K	0.503	0.33
222_K	338_I	0.502	0.33
196_Y	319_M	0.502	0.33
274_R	330_E	0.502	0.33
49_R	74_S	0.501	0.33
202_L	282_L	0.500	0.32

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2c5sA	2	0.9277	100	0.345	Contact Map
4kr6A	2	0.9526	100	0.371	Contact Map
1vbkA	2	0.7431	100	0.492	Contact Map
3uowA	2	0.8404	99.9	0.833	Contact Map
1gpmA	3	0.8105	99.9	0.85	Contact Map
2dplA	2	0.5187	99.9	0.852	Contact Map
2ywbA	4	0.8653	99.9	0.855	Contact Map
3tqiA	3	0.8204	99.9	0.856	Contact Map
2derA	1	0.5187	99.8	0.866	Contact Map
2hmaA	2	0.5362	99.8	0.869	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0118 seconds.