GREMLIN Database
YJQA - Uncharacterized protein YjqA
UniProt: O34593 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 125 (114)
Sequences: 602 (393)
Seq/√Len: 36.8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
67_Q76_R5.8671.00
29_E122_A2.6881.00
92_K104_S2.5461.00
41_R57_Q2.5261.00
79_V91_L2.5161.00
46_F71_Y2.5151.00
23_L26_I2.4401.00
75_S96_S2.4211.00
19_V36_A2.4111.00
41_R58_G2.2530.99
43_L54_V2.2070.99
108_K111_E2.1600.99
69_I103_V2.1340.99
79_V117_Q2.0040.99
117_Q121_A1.8900.98
53_L105_K1.8360.97
18_A21_E1.8290.97
29_E118_K1.8120.97
22_E56_K1.7590.97
65_E78_S1.7320.96
18_A38_K1.6680.95
14_L19_V1.6490.95
32_K48_D1.6380.95
44_I53_L1.5230.93
44_I105_K1.4960.92
57_Q61_G1.4950.92
23_L45_V1.4950.92
76_R98_A1.4530.91
12_S88_D1.4140.89
58_G61_G1.3850.88
51_L105_K1.3630.88
65_E92_K1.3560.87
16_T33_V1.3380.87
19_V33_V1.2920.85
34_E48_D1.2780.84
44_I49_K1.2720.84
62_K93_I1.2460.82
63_K80_E1.2430.82
15_S32_K1.2300.82
77_F121_A1.2200.81
16_T122_A1.2190.81
15_S18_A1.1890.79
41_R60_T1.1750.78
29_E48_D1.1740.78
62_K81_T1.1570.77
110_D115_D1.1350.76
24_A112_S1.1200.75
67_Q98_A1.1190.75
70_P86_D1.1170.75
23_L119_V1.1140.75
25_H112_S1.1040.74
6_G40_V1.0840.73
88_D106_Q1.0690.72
82_A109_K1.0630.71
71_Y77_F1.0530.70
46_F68_S1.0460.70
55_D65_E1.0380.69
60_T84_R1.0310.69
89_S92_K1.0300.69
24_A33_V1.0150.67
63_K86_D0.9980.66
41_R61_G0.9850.65
51_L74_I0.9730.64
107_F115_D0.9620.63
112_S115_D0.9120.59
56_K64_T0.8990.58
7_L55_D0.8780.56
18_A30_G0.8750.56
28_L121_A0.8740.56
8_L29_E0.8490.54
117_Q120_L0.8460.53
15_S24_A0.8410.53
10_N88_D0.8350.52
84_R87_L0.8270.52
30_G122_A0.8240.51
90_E116_I0.8110.50
38_K45_V0.7910.49
105_K109_K0.7900.48
11_A73_S0.7800.48
29_E89_S0.7780.47
13_T37_F0.7770.47
91_L113_I0.7750.47
43_L84_R0.7670.46
114_Y117_Q0.7660.46
25_H114_Y0.7640.46
16_T22_E0.7610.46
36_A70_P0.7490.45
49_K109_K0.7360.44
68_S80_E0.7330.43
53_L69_I0.7320.43
82_A114_Y0.7270.43
75_S116_I0.7210.42
39_L44_I0.7190.42
69_I82_A0.7130.42
91_L107_F0.7060.41
43_L56_K0.7020.41
45_V115_D0.7020.41
50_R68_S0.6990.41
15_S38_K0.6860.39
19_V115_D0.6780.39
37_F115_D0.6710.38
77_F94_W0.6700.38
35_A119_V0.6690.38
27_L33_V0.6540.37
94_W121_A0.6500.36
79_V114_Y0.6500.36
51_L121_A0.6490.36
45_V49_K0.6470.36
73_S95_I0.6460.36
59_I85_F0.6440.36
48_D122_A0.6430.36
95_I117_Q0.6420.36
35_A116_I0.6410.36
107_F116_I0.6340.35
35_A115_D0.6310.35
37_F40_V0.6280.35
106_Q111_E0.6260.35
57_Q63_K0.6250.34
7_L85_F0.6200.34
21_E109_K0.6200.34
16_T30_G0.6190.34
65_E103_V0.6130.34
16_T32_K0.6120.33
51_L91_L0.6110.33
65_E97_G0.6100.33
11_A120_L0.6100.33
62_K84_R0.6090.33
44_I76_R0.6030.33
8_L56_K0.6030.33
59_I109_K0.6010.33
13_T35_A0.5970.32
91_L105_K0.5940.32
58_G90_E0.5910.32
38_K72_K0.5890.32
6_G82_A0.5890.32
9_G39_L0.5880.32
28_L78_S0.5810.31
35_A82_A0.5790.31
73_S121_A0.5790.31
22_E51_L0.5760.31
20_Q110_D0.5730.30
107_F114_Y0.5720.30
52_I60_T0.5710.30
33_V36_A0.5610.30
61_G81_T0.5610.30
59_I116_I0.5580.29
108_K119_V0.5570.29
68_S71_Y0.5530.29
18_A24_A0.5510.29
25_H118_K0.5510.29
46_F116_I0.5490.29
39_L120_L0.5470.29
39_L67_Q0.5450.28
6_G12_S0.5340.28
69_I95_I0.5310.27
26_I107_F0.5300.27
22_E93_I0.5280.27
35_A79_V0.5260.27
46_F91_L0.5260.27
25_H113_I0.5230.27
95_I107_F0.5210.27
45_V106_Q0.5210.27
11_A101_P0.5200.27
89_S114_Y0.5200.27
41_R90_E0.5190.27
81_T117_Q0.5160.26
113_I119_V0.5150.26
96_S101_P0.5130.26
107_F113_I0.5030.26
19_V43_L0.5010.25
36_A45_V0.5000.25
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3hsaA 3 0.904 100 0.111 Contact Map
3b77A 4 0.928 100 0.314 Contact Map
2cayA 4 0.88 95.8 0.874 Contact Map
1zsqA 1 0.776 92.8 0.891 Contact Map
1lw3A 1 0.776 91.3 0.896 Contact Map
2hthB 1 0.808 91.1 0.896 Contact Map
1w7pD 1 0 70.3 0.918 Contact Map
2yf0A 2 0.712 65.6 0.921 Contact Map
4r8gE 1 0.856 38.4 0.933 Contact Map
2i1jA 3 0.896 31.4 0.936 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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