BRAB - BACSU - GREMLIN Contacts

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BRAB - Branched-chain amino acid transport system carrier protein BraB

UniProt:	O34545	Sequences: MKHSLPVKDTIIIGFMLFALFFGAGNMIYPPELGQAAGHNVWKAIGGFLLTGVGLPLLGIIAIALTGKDAKGLADKAHPVFGTIFTVVLYLSIGPLFAIPRTGTVSYEIGAVPFLTGVPERLSLLIFTLIFFGVTYYLALNPSKVVDRVGKILTPIKFTIILIIVLKAIFTPMGGLGAVTEAYKGTPVFKGFLEGYKTMDALASIVFGVVVVNAVKSKGVTQSKALAAACIKAGVIAALGLTFIYVSLAYLGATSTNAIGPVGEGAKILSASSHYLFGSLGNIVLGAAITVACLTTSIGLVTSCGQYFSKLIPALSYKIVVTIVTLFSLIIANFGLAQIIAFSVPILSAIYPLAIVIIVLSFIDKIFKERREVYIACLIGTGLFSILDGIKAAGFSLGSLDVFLNANLPLYSLGIGWVLPGIVGAVIGYVLTLFIGPSKQLNEIS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	445 (427)
Sequences:	1608 (1192)
Seq/√Len:	57.7

ECOLI - BRNQ
BACSU - BRAB BRNQ

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
135_T	301_V	5.287	1.00
380_G	424_G	4.887	1.00
381_T	421_G	4.341	1.00
136_Y	322_T	4.106	1.00
129_L	329_L	4.098	1.00
228_A	232_K	3.881	1.00
190_K	194_E	3.873	1.00
377_C	425_A	3.816	1.00
424_G	428_G	3.677	1.00
135_T	297_S	3.665	1.00
327_F	331_I	3.621	1.00
39_H	179_V	3.483	1.00
203_A	207_F	3.121	1.00
59_G	204_S	2.913	1.00
57_L	238_A	2.858	1.00
167_K	171_T	2.826	1.00
9_D	218_K	2.656	1.00
264_E	337_A	2.622	1.00
235_V	239_L	2.562	1.00
305_G	320_V	2.477	1.00
81_F	378_L	2.421	1.00
41_V	249_A	2.405	1.00
19_A	149_V	2.386	1.00
356_V	381_T	2.377	1.00
14_G	236_I	2.368	1.00
301_V	321_V	2.367	1.00
103_G	128_T	2.358	1.00
156_I	291_V	2.334	1.00
59_G	358_I	2.295	1.00
85_F	354_A	2.245	1.00
376_A	380_G	2.226	1.00
98_A	202_L	2.207	1.00
356_V	421_G	2.198	1.00
128_T	333_N	2.187	1.00
316_S	319_I	2.177	1.00
125_L	129_L	2.157	1.00
136_Y	140_L	2.134	1.00
166_L	170_F	2.125	1.00
138_L	298_I	2.114	1.00
107_Y	123_S	2.019	1.00
371_R	375_I	2.012	1.00
222_Q	225_A	2.000	1.00
52_G	56_P	1.974	1.00
215_V	226_L	1.961	1.00
301_V	325_T	1.951	1.00
88_V	350_I	1.943	1.00
138_L	146_V	1.937	1.00
315_L	319_I	1.928	1.00
134_V	294_L	1.922	1.00
22_F	27_M	1.907	1.00
135_T	325_T	1.885	1.00
15_F	154_T	1.863	1.00
77_A	81_F	1.841	1.00
136_Y	321_V	1.829	0.99
102_T	297_S	1.768	0.99
103_G	133_G	1.767	0.99
419_L	423_V	1.755	0.99
334_F	338_Q	1.749	0.99
162_L	166_L	1.746	0.99
338_Q	341_A	1.737	0.99
37_A	44_A	1.735	0.99
45_I	249_A	1.722	0.99
263_G	267_K	1.701	0.99
103_G	132_F	1.688	0.99
138_L	294_L	1.676	0.99
130_I	134_V	1.649	0.99
61_I	231_I	1.645	0.99
421_G	424_G	1.633	0.99
158_F	244_I	1.631	0.99
165_V	247_S	1.626	0.99
83_T	87_V	1.617	0.99
376_A	428_G	1.586	0.98
157_K	288_A	1.582	0.98
201_A	358_I	1.580	0.98
224_K	228_A	1.570	0.98
250_Y	254_T	1.564	0.98
380_G	428_G	1.563	0.98
97_F	346_I	1.562	0.98
160_I	288_A	1.552	0.98
315_L	320_V	1.541	0.98
172_P	254_T	1.535	0.98
31_P	248_L	1.529	0.98
139_A	302_T	1.528	0.98
107_Y	120_E	1.523	0.98
122_L	126_I	1.521	0.98
294_L	298_I	1.518	0.98
380_G	383_L	1.513	0.98
136_Y	325_T	1.511	0.98
13_I	215_V	1.506	0.98
137_Y	148_R	1.506	0.98
6_P	9_D	1.499	0.98
59_G	201_A	1.494	0.98
389_G	393_A	1.491	0.98
304_C	324_V	1.485	0.98
353_L	382_G	1.482	0.98
104_T	124_L	1.477	0.98
309_S	316_S	1.470	0.98
91_L	96_L	1.468	0.98
205_I	354_A	1.456	0.97
379_I	382_G	1.446	0.97
349_A	386_I	1.433	0.97
330_I	334_F	1.421	0.97
45_I	246_V	1.417	0.97
31_P	268_I	1.412	0.97
17_L	60_I	1.410	0.97
344_V	348_S	1.403	0.97
240_G	244_I	1.400	0.97
353_L	378_L	1.387	0.96
157_K	295_T	1.381	0.96
103_G	135_T	1.380	0.96
305_G	321_V	1.377	0.96
284_V	288_A	1.374	0.96
182_A	190_K	1.369	0.96
93_I	98_A	1.369	0.96
127_F	290_T	1.366	0.96
168_A	251_L	1.351	0.96
176_L	253_A	1.348	0.96
388_D	416_G	1.347	0.96
43_K	46_G	1.343	0.96
46_G	188_V	1.339	0.96
76_K	364_D	1.335	0.96
97_F	340_I	1.335	0.96
172_P	255_S	1.325	0.95
429_Y	433_L	1.314	0.95
266_A	336_L	1.312	0.95
124_L	128_T	1.310	0.95
73_L	361_S	1.309	0.95
367_F	373_V	1.292	0.95
188_V	192_F	1.274	0.94
381_T	385_S	1.273	0.94
98_A	308_F	1.272	0.94
20_L	149_V	1.269	0.94
82_G	164_I	1.268	0.94
167_K	277_F	1.260	0.94
376_A	424_G	1.254	0.94
20_L	339_I	1.251	0.94
133_G	137_Y	1.244	0.94
301_V	324_V	1.243	0.94
376_A	431_L	1.241	0.93
92_S	97_F	1.240	0.93
360_L	373_V	1.236	0.93
20_L	98_A	1.233	0.93
113_P	116_T	1.233	0.93
419_L	426_V	1.232	0.93
262_V	268_I	1.228	0.93
197_K	339_I	1.216	0.93
410_L	413_L	1.211	0.93
124_L	333_N	1.204	0.92
49_L	242_T	1.203	0.92
126_I	130_I	1.201	0.92
364_D	374_Y	1.201	0.92
49_L	53_V	1.201	0.92
422_I	435_I	1.200	0.92
372_E	376_A	1.199	0.92
375_I	379_I	1.199	0.92
159_T	163_I	1.190	0.92
320_V	324_V	1.189	0.92
81_F	353_L	1.186	0.92
19_A	295_T	1.181	0.92
268_I	272_S	1.166	0.91
99_I	328_S	1.156	0.91
364_D	369_E	1.153	0.91
356_V	378_L	1.146	0.90
128_T	332_A	1.144	0.90
54_G	95_P	1.144	0.90
312_I	320_V	1.143	0.90
70_A	86_T	1.142	0.90
75_D	82_G	1.128	0.90
80_V	84_I	1.128	0.90
32_E	36_A	1.122	0.89
47_G	188_V	1.113	0.89
15_F	19_A	1.110	0.89
376_A	427_I	1.108	0.89
125_L	329_L	1.101	0.89
329_L	332_A	1.093	0.88
370_R	432_T	1.091	0.88
120_E	123_S	1.086	0.88
349_A	389_G	1.077	0.87
106_S	290_T	1.074	0.87
237_A	241_L	1.074	0.87
96_L	342_F	1.067	0.87
291_V	295_T	1.065	0.87
51_T	56_P	1.065	0.87
40_N	43_K	1.058	0.86
63_I	208_G	1.058	0.86
189_F	415_I	1.052	0.86
380_G	384_F	1.052	0.86
322_T	326_L	1.046	0.86
41_V	253_A	1.044	0.86
154_T	157_K	1.034	0.85
53_V	242_T	1.034	0.85
55_L	355_I	1.028	0.85
63_I	212_V	1.028	0.85
349_A	353_L	1.028	0.85
109_I	208_G	1.025	0.85
58_L	359_V	1.021	0.84
20_L	105_V	1.020	0.84
16_M	20_L	1.015	0.84
49_L	161_I	1.015	0.84
383_L	427_I	1.012	0.84
31_P	269_L	1.009	0.84
98_A	207_F	1.008	0.84
388_D	391_K	0.996	0.83
20_L	207_F	0.994	0.83
431_L	434_F	0.987	0.82
91_L	308_F	0.982	0.82
50_L	188_V	0.975	0.82
391_K	401_D	0.973	0.82
213_N	216_K	0.973	0.82
107_Y	127_F	0.973	0.82
20_L	340_I	0.971	0.81
141_N	148_R	0.969	0.81
164_I	288_A	0.969	0.81
376_A	425_A	0.969	0.81
207_F	211_V	0.967	0.81
12_I	19_A	0.955	0.80
202_L	350_I	0.954	0.80
106_S	127_F	0.951	0.80
384_F	408_L	0.951	0.80
125_L	333_N	0.950	0.80
22_F	158_F	0.950	0.80
384_F	404_L	0.949	0.80
274_H	282_N	0.949	0.80
69_D	310_K	0.948	0.80
19_A	157_K	0.946	0.80
305_G	342_F	0.946	0.80
86_T	307_Y	0.946	0.80
85_F	89_L	0.944	0.79
380_G	421_G	0.943	0.79
17_L	22_F	0.940	0.79
309_S	315_L	0.939	0.79
265_G	336_L	0.937	0.79
430_V	434_F	0.935	0.79
10_T	232_K	0.935	0.79
21_F	60_I	0.933	0.79
385_S	389_G	0.932	0.79
121_R	125_L	0.931	0.79
27_M	288_A	0.930	0.78
102_T	106_S	0.930	0.78
226_L	230_C	0.929	0.78
92_S	350_I	0.928	0.78
197_K	385_S	0.927	0.78
388_D	392_A	0.920	0.78
157_K	292_A	0.918	0.78
79_P	192_F	0.918	0.78
58_L	362_F	0.917	0.77
147_D	218_K	0.917	0.77
300_L	343_S	0.916	0.77
170_F	173_M	0.915	0.77
62_A	361_S	0.911	0.77
356_V	377_C	0.910	0.77
241_L	295_T	0.910	0.77
115_L	123_S	0.906	0.77
160_I	287_A	0.898	0.76
62_A	66_T	0.898	0.76
176_L	254_T	0.898	0.76
10_T	240_G	0.897	0.76
8_K	12_I	0.889	0.75
89_L	202_L	0.886	0.75
80_V	298_I	0.885	0.75
171_T	276_L	0.881	0.75
169_I	250_Y	0.880	0.75
57_L	266_A	0.877	0.74
95_P	347_L	0.876	0.74
234_G	268_I	0.872	0.74
42_W	46_G	0.872	0.74
99_I	297_S	0.867	0.73
402_V	406_A	0.866	0.73
61_I	227_A	0.863	0.73
109_I	289_I	0.860	0.73
81_F	85_F	0.859	0.73
146_V	214_A	0.859	0.73
89_L	350_I	0.859	0.73
263_G	337_A	0.857	0.73
157_K	241_L	0.856	0.72
236_I	355_I	0.854	0.72
12_I	16_M	0.853	0.72
164_I	273_S	0.852	0.72
77_A	378_L	0.851	0.72
224_K	423_V	0.851	0.72
134_V	290_T	0.849	0.72
111_A	114_F	0.847	0.72
153_L	296_T	0.843	0.71
93_I	203_A	0.838	0.71
154_T	295_T	0.838	0.71
389_G	392_A	0.836	0.71
63_I	73_L	0.832	0.70
68_K	72_G	0.831	0.70
55_L	110_G	0.829	0.70
46_G	50_L	0.826	0.70
71_K	310_K	0.826	0.70
97_F	343_S	0.824	0.70
16_M	265_G	0.823	0.69
102_T	328_S	0.822	0.69
76_K	361_S	0.822	0.69
416_G	426_V	0.821	0.69
44_A	194_E	0.820	0.69
145_V	244_I	0.819	0.69
35_Q	255_S	0.814	0.69
144_K	147_D	0.813	0.69
75_D	79_P	0.812	0.68
67_G	73_L	0.810	0.68
95_P	300_L	0.808	0.68
9_D	14_G	0.807	0.68
146_V	295_T	0.806	0.68
18_F	22_F	0.806	0.68
127_F	289_I	0.804	0.68
326_L	330_I	0.798	0.67
237_A	291_V	0.798	0.67
264_E	267_K	0.797	0.67
102_T	324_V	0.797	0.67
372_E	375_I	0.796	0.67
20_L	60_I	0.795	0.67
10_T	236_I	0.794	0.67
22_F	240_G	0.793	0.67
406_A	422_I	0.792	0.66
122_L	166_L	0.792	0.66
159_T	426_V	0.790	0.66
90_Y	206_V	0.788	0.66
157_K	307_Y	0.786	0.66
21_F	204_S	0.785	0.66
169_I	247_S	0.784	0.66
206_V	241_L	0.777	0.65
141_N	318_K	0.777	0.65
407_N	423_V	0.776	0.65
52_G	205_I	0.776	0.65
144_K	148_R	0.774	0.65
224_K	383_L	0.773	0.65
183_Y	336_L	0.773	0.65
131_F	288_A	0.771	0.64
96_L	331_I	0.769	0.64
116_T	353_L	0.767	0.64
273_S	277_F	0.767	0.64
146_V	157_K	0.766	0.64
289_I	343_S	0.765	0.64
398_G	401_D	0.763	0.64
226_L	233_A	0.759	0.63
95_P	99_I	0.758	0.63
343_S	349_A	0.752	0.62
20_L	97_F	0.750	0.62
387_L	404_L	0.748	0.62
276_L	374_Y	0.747	0.62
87_V	311_L	0.745	0.62
185_G	189_F	0.743	0.62
388_D	411_Y	0.741	0.61
334_F	339_I	0.740	0.61
348_S	392_A	0.740	0.61
176_L	250_Y	0.739	0.61
109_I	270_S	0.735	0.61
123_S	126_I	0.734	0.61
65_L	210_V	0.733	0.60
19_A	238_A	0.733	0.60
93_I	305_G	0.732	0.60
126_I	359_V	0.732	0.60
96_L	346_I	0.731	0.60
288_A	339_I	0.731	0.60
250_Y	253_A	0.731	0.60
307_Y	311_L	0.729	0.60
104_T	247_S	0.727	0.60
326_L	426_V	0.724	0.60
146_V	149_V	0.724	0.60
184_K	187_P	0.723	0.59
255_S	272_S	0.723	0.59
90_Y	187_P	0.722	0.59
70_A	89_L	0.721	0.59
149_V	350_I	0.720	0.59
220_V	225_A	0.720	0.59
19_A	241_L	0.720	0.59
411_Y	416_G	0.719	0.59
74_A	357_I	0.717	0.59
239_L	242_T	0.717	0.59
102_T	247_S	0.716	0.59
316_S	323_I	0.716	0.59
105_V	331_I	0.715	0.59
304_C	308_F	0.713	0.58
16_M	19_A	0.711	0.58
188_V	194_E	0.711	0.58
156_I	159_T	0.710	0.58
95_P	343_S	0.710	0.58
177_G	256_T	0.710	0.58
87_V	308_F	0.710	0.58
49_L	55_L	0.710	0.58
295_T	307_Y	0.709	0.58
157_K	291_V	0.707	0.58
127_F	165_V	0.707	0.58
19_A	197_K	0.707	0.58
206_V	303_S	0.705	0.57
31_P	210_V	0.705	0.57
98_A	300_L	0.704	0.57
106_S	282_N	0.704	0.57
315_L	323_I	0.701	0.57
108_E	264_E	0.701	0.57
209_V	304_C	0.698	0.57
139_A	203_A	0.696	0.57
134_V	137_Y	0.695	0.56
59_G	240_G	0.695	0.56
126_I	426_V	0.695	0.56
110_G	113_P	0.694	0.56
6_P	46_G	0.693	0.56
126_I	133_G	0.692	0.56
398_G	402_V	0.691	0.56
70_A	206_V	0.691	0.56
14_G	240_G	0.690	0.56
326_L	329_L	0.690	0.56
26_N	29_Y	0.690	0.56
108_E	112_V	0.690	0.56
105_V	124_L	0.688	0.56
377_C	428_G	0.688	0.56
201_A	348_S	0.687	0.56
241_L	307_Y	0.684	0.55
360_L	374_Y	0.684	0.55
348_S	389_G	0.684	0.55
64_A	199_M	0.679	0.55
181_E	185_G	0.676	0.54
207_F	300_L	0.676	0.54
229_A	339_I	0.674	0.54
111_A	244_I	0.672	0.54
142_P	306_Q	0.671	0.54
25_G	29_Y	0.670	0.54
266_A	411_Y	0.670	0.54
183_Y	187_P	0.667	0.53
97_F	339_I	0.667	0.53
372_E	431_L	0.666	0.53
173_M	254_T	0.666	0.53
61_I	234_G	0.663	0.53
64_A	234_G	0.659	0.52
90_Y	299_G	0.659	0.52
410_L	415_I	0.658	0.52
175_G	423_V	0.655	0.52
356_V	359_V	0.655	0.52
135_T	294_L	0.654	0.52
41_V	45_I	0.654	0.52
80_V	83_T	0.650	0.51
89_L	238_A	0.645	0.51
99_I	103_G	0.644	0.51
19_A	285_L	0.643	0.51
263_G	268_I	0.640	0.50
154_T	158_F	0.640	0.50
108_E	211_V	0.640	0.50
52_G	208_G	0.637	0.50
323_I	386_I	0.634	0.50
370_R	433_L	0.634	0.50
21_F	233_A	0.633	0.50
400_L	408_L	0.631	0.49
21_F	26_N	0.630	0.49
102_T	132_F	0.630	0.49
12_I	145_V	0.629	0.49
131_F	374_Y	0.628	0.49
33_L	104_T	0.627	0.49
372_E	422_I	0.625	0.49
365_K	368_K	0.624	0.49
165_V	216_K	0.624	0.49
103_G	240_G	0.624	0.49
20_L	203_A	0.623	0.49
33_L	249_A	0.621	0.48
72_G	75_D	0.620	0.48
27_M	327_F	0.620	0.48
58_L	358_I	0.619	0.48
224_K	287_A	0.617	0.48
126_I	423_V	0.617	0.48
183_Y	265_G	0.616	0.48
69_D	72_G	0.616	0.48
139_A	321_V	0.615	0.48
323_I	376_A	0.615	0.48
396_S	399_S	0.613	0.47
181_E	419_L	0.612	0.47
77_A	272_S	0.611	0.47
107_Y	158_F	0.610	0.47
312_I	349_A	0.610	0.47
360_L	377_C	0.610	0.47
194_E	197_K	0.610	0.47
230_C	236_I	0.609	0.47
422_I	425_A	0.609	0.47
94_G	98_A	0.609	0.47
382_G	386_I	0.607	0.47
22_F	272_S	0.606	0.47
52_G	273_S	0.606	0.47
400_L	404_L	0.605	0.47
245_Y	293_C	0.605	0.47
282_N	286_G	0.603	0.46
220_V	247_S	0.603	0.46
98_A	102_T	0.601	0.46
10_T	229_A	0.600	0.46
372_E	423_V	0.600	0.46
88_V	346_I	0.599	0.46
251_L	262_V	0.599	0.46
90_Y	303_S	0.597	0.46
107_Y	125_L	0.596	0.46
289_I	310_K	0.595	0.45
23_G	26_N	0.595	0.45
271_A	274_H	0.595	0.45
262_V	272_S	0.593	0.45
366_I	426_V	0.592	0.45
133_G	274_H	0.592	0.45
67_G	254_T	0.592	0.45
309_S	320_V	0.589	0.45
92_S	328_S	0.589	0.45
6_P	11_I	0.589	0.45
94_G	300_L	0.588	0.45
96_L	327_F	0.588	0.45
85_F	206_V	0.587	0.45
88_V	145_V	0.587	0.45
76_K	374_Y	0.586	0.44
173_M	275_Y	0.585	0.44
408_L	416_G	0.584	0.44
396_S	426_V	0.584	0.44
94_G	207_F	0.583	0.44
172_P	219_G	0.581	0.44
237_A	411_Y	0.581	0.44
164_I	340_I	0.579	0.44
66_T	153_L	0.578	0.44
37_A	287_A	0.578	0.44
220_V	229_A	0.577	0.43
132_F	237_A	0.576	0.43
133_G	136_Y	0.576	0.43
267_K	271_A	0.575	0.43
98_A	203_A	0.575	0.43
206_V	354_A	0.574	0.43
114_F	145_V	0.573	0.43
52_G	238_A	0.573	0.43
22_F	165_V	0.572	0.43
288_A	291_V	0.572	0.43
131_F	135_T	0.572	0.43
256_T	259_I	0.571	0.43
263_G	298_I	0.570	0.43
84_I	326_L	0.569	0.43
59_G	203_A	0.568	0.43
194_E	265_G	0.567	0.42
142_P	302_T	0.567	0.42
426_V	430_V	0.565	0.42
16_M	90_Y	0.565	0.42
33_L	194_E	0.565	0.42
186_T	329_L	0.564	0.42
28_I	266_A	0.563	0.42
379_I	383_L	0.563	0.42
89_L	321_V	0.562	0.42
53_V	192_F	0.561	0.42
148_R	152_I	0.561	0.42
109_I	249_A	0.560	0.42
327_F	330_I	0.560	0.42
53_V	241_L	0.560	0.42
209_V	336_L	0.560	0.42
403_F	406_A	0.559	0.42
127_F	393_A	0.558	0.41
70_A	208_G	0.558	0.41
215_V	230_C	0.557	0.41
223_S	310_K	0.556	0.41
8_K	75_D	0.556	0.41
93_I	110_G	0.556	0.41
48_F	64_A	0.555	0.41
239_L	243_F	0.555	0.41
153_L	230_C	0.553	0.41
140_L	318_K	0.552	0.41
169_I	228_A	0.551	0.41
421_G	428_G	0.551	0.41
19_A	51_T	0.550	0.41
376_A	379_I	0.550	0.41
90_Y	265_G	0.548	0.40
69_D	208_G	0.547	0.40
15_F	197_K	0.547	0.40
214_A	309_S	0.546	0.40
22_F	339_I	0.546	0.40
292_A	298_I	0.545	0.40
286_G	313_P	0.545	0.40
36_A	103_G	0.544	0.40
356_V	411_Y	0.543	0.40
67_G	71_K	0.543	0.40
372_E	390_I	0.540	0.40
322_T	431_L	0.540	0.40
22_F	33_L	0.540	0.40
103_G	297_S	0.540	0.40
258_A	288_A	0.539	0.39
361_S	420_P	0.538	0.39
131_F	297_S	0.537	0.39
189_F	193_L	0.537	0.39
103_G	106_S	0.537	0.39
90_Y	209_V	0.536	0.39
8_K	143_S	0.535	0.39
140_L	322_T	0.535	0.39
14_G	98_A	0.535	0.39
72_G	349_A	0.535	0.39
197_K	415_I	0.535	0.39
408_L	421_G	0.534	0.39
169_I	375_I	0.533	0.39
367_F	425_A	0.533	0.39
212_V	234_G	0.532	0.39
52_G	289_I	0.531	0.39
221_T	430_V	0.531	0.39
15_F	161_I	0.531	0.39
171_T	221_T	0.531	0.39
109_I	282_N	0.530	0.38
262_V	267_K	0.529	0.38
61_I	64_A	0.528	0.38
401_D	430_V	0.528	0.38
13_I	17_L	0.528	0.38
156_I	288_A	0.528	0.38
23_G	30_P	0.527	0.38
326_L	429_Y	0.525	0.38
174_G	236_I	0.525	0.38
336_L	340_I	0.524	0.38
418_V	422_I	0.522	0.38
203_A	244_I	0.522	0.38
36_A	40_N	0.522	0.38
400_L	407_N	0.521	0.38
130_I	383_L	0.521	0.38
177_G	326_L	0.521	0.38
157_K	244_I	0.520	0.37
331_I	425_A	0.519	0.37
79_P	84_I	0.518	0.37
49_L	246_V	0.518	0.37
407_N	434_F	0.518	0.37
47_G	56_P	0.517	0.37
54_G	350_I	0.515	0.37
323_I	359_V	0.512	0.37
102_T	343_S	0.512	0.37
251_L	413_L	0.512	0.37
251_L	284_V	0.511	0.37
104_T	161_I	0.511	0.37
258_A	275_Y	0.511	0.37
402_V	433_L	0.510	0.36
322_T	378_L	0.509	0.36
423_V	427_I	0.508	0.36
215_V	289_I	0.508	0.36
397_L	426_V	0.508	0.36
52_G	65_L	0.508	0.36
363_I	366_I	0.507	0.36
210_V	277_F	0.506	0.36
50_L	84_I	0.505	0.36
85_F	90_Y	0.505	0.36
329_L	334_F	0.505	0.36
85_F	205_I	0.504	0.36
227_A	385_S	0.504	0.36
237_A	292_A	0.503	0.36
106_S	289_I	0.503	0.36
19_A	303_S	0.501	0.36
274_H	279_S	0.501	0.36
134_V	330_I	0.501	0.36
221_T	423_V	0.501	0.36
84_I	274_H	0.500	0.35
427_I	431_L	0.500	0.35

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3giaA	1	0.9281	100	0.807	Contact Map
3l1lA	2	0.8742	99.3	0.905	Contact Map
3dh4A	3	0.8787	98.7	0.927	Contact Map
4djkA	2	0.8719	98.5	0.931	Contact Map
2xq2A	2	0.8921	98.4	0.932	Contact Map
2a65A	2	0.9438	97.7	0.944	Contact Map
2jlnA	1	0.8966	97.3	0.948	Contact Map
4us3A	1	0.8854	96.5	0.953	Contact Map
4wgvA	2	0.7865	96.1	0.955	Contact Map
4xp4A	1	0.9416	96.1	0.955	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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