YCCF - BACSU - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

YCCF - Uncharacterized protein YccF

UniProt:	O34478	Sequences: MGKVKRNAPCPCGSGKKYKKCCGSKVVDFPAELAAKEAKQIQEDLVEYAFTVHRESISGFINQHDFLSAMDRQTKDISVFNLGIWGIFFHPLAGEKTIFEEYLQKKGDSITRPKTREIVESWQSMTPALLLLKDLKEGIIHFEDVITAKQFEVEMDASNQDLPPVGSLILGYPIHEAEKAEFFMQFTIFPVKRTEALISKVKKYADAAVKDGKTPEDFMKQEFNNVLFALLAEKDEEPQAEKAEVSTVEWANDLEKETAAAIEEGMSGEEYPTELIPAVIDIWKTFCEKKSPVIRKPEAFAAAVEYYVNAISLNGASVSQAKLAKKYGVSASTISSRYKEIESTLQDEADRFAQALSS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	358 (332)
Sequences:	162 (144)
Seq/√Len:	7.9

BACSU - YCCF

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
6_R	19_K	3.915	0.97
6_R	17_K	3.566	0.94
7_N	17_K	3.546	0.94
10_C	14_S	3.127	0.89
283_W	306_Y	3.074	0.88
10_C	13_G	3.039	0.88
12_C	21_C	2.999	0.87
10_C	21_C	2.999	0.87
7_N	19_K	2.959	0.86
7_N	15_G	2.832	0.84
14_S	21_C	2.767	0.82
13_G	21_C	2.628	0.79
17_K	20_K	2.614	0.78
16_K	19_K	2.605	0.78
8_A	20_K	2.528	0.76
299_A	333_T	2.442	0.73
174_I	301_A	2.438	0.73
6_R	15_G	2.435	0.73
12_C	22_C	2.374	0.71
10_C	22_C	2.374	0.71
7_N	14_S	2.338	0.70
12_C	15_G	2.296	0.68
10_C	15_G	2.296	0.68
6_R	16_K	2.280	0.68
6_R	18_Y	2.258	0.67
7_N	10_C	2.228	0.66
7_N	12_C	2.228	0.66
18_Y	21_C	2.214	0.65
14_S	17_K	2.189	0.64
14_S	19_K	2.178	0.64
7_N	21_C	2.116	0.61
15_G	19_K	2.114	0.61
7_N	20_K	2.103	0.61
14_S	22_C	2.101	0.61
7_N	18_Y	2.098	0.61
250_W	259_A	2.083	0.60
6_R	20_K	2.031	0.58
6_R	14_S	2.013	0.57
15_G	21_C	1.998	0.57
10_C	19_K	1.980	0.56
12_C	19_K	1.980	0.56
305_E	326_K	1.972	0.56
6_R	10_C	1.930	0.54
6_R	12_C	1.930	0.54
287_C	303_A	1.902	0.53
10_C	17_K	1.895	0.53
12_C	17_K	1.895	0.53
13_G	22_C	1.891	0.53
12_C	16_K	1.877	0.52
10_C	16_K	1.877	0.52
6_R	21_C	1.852	0.51
305_E	327_Y	1.839	0.50
12_C	18_Y	1.802	0.49
10_C	18_Y	1.802	0.49
7_N	13_G	1.799	0.49
7_N	16_K	1.757	0.47
17_K	21_C	1.749	0.47
89_F	172_Y	1.723	0.46
49_A	85_W	1.705	0.45
44_D	115_T	1.643	0.42
82_L	89_F	1.634	0.42
16_K	21_C	1.615	0.41
23_G	183_F	1.604	0.41
283_W	327_Y	1.576	0.40
15_G	20_K	1.573	0.40
45_L	296_K	1.572	0.40
14_S	20_K	1.532	0.38
323_L	331_A	1.529	0.38
280_I	298_E	1.529	0.38
13_G	18_Y	1.523	0.38
13_G	19_K	1.514	0.37
14_S	18_Y	1.513	0.37
41_I	76_D	1.493	0.37
130_L	308_V	1.489	0.37
6_R	13_G	1.484	0.36
258_T	283_W	1.444	0.35
13_G	17_K	1.435	0.35
296_K	332_S	1.423	0.34
99_F	125_M	1.422	0.34
303_A	341_I	1.421	0.34
13_G	16_K	1.406	0.33
42_Q	88_F	1.385	0.33
323_L	334_I	1.370	0.32
127_P	294_I	1.361	0.32
294_I	337_R	1.350	0.31
97_T	171_G	1.347	0.31
86_G	285_T	1.341	0.31
283_W	304_V	1.319	0.30
150_Q	286_F	1.318	0.30
116_R	303_A	1.312	0.30
112_R	115_T	1.308	0.30
110_I	115_T	1.308	0.30
16_K	20_K	1.306	0.30
306_Y	327_Y	1.301	0.30
134_D	203_K	1.299	0.30
265_G	327_Y	1.297	0.30
60_F	82_L	1.293	0.29
8_A	324_A	1.293	0.29
7_N	22_C	1.292	0.29
85_W	127_P	1.291	0.29
9_P	20_K	1.286	0.29
175_H	187_T	1.284	0.29
334_I	338_Y	1.284	0.29
45_L	295_R	1.279	0.29
283_W	287_C	1.276	0.29
147_T	201_V	1.272	0.29
18_Y	22_C	1.271	0.29
8_A	17_K	1.269	0.29
258_T	301_A	1.267	0.29
119_V	170_L	1.256	0.28
296_K	329_V	1.251	0.28
173_P	282_I	1.248	0.28
120_E	297_P	1.234	0.28
9_P	197_L	1.225	0.27
199_S	327_Y	1.222	0.27
12_C	20_K	1.209	0.27
10_C	20_K	1.209	0.27
220_K	341_I	1.198	0.26
324_A	330_S	1.192	0.26
9_P	14_S	1.191	0.26
303_A	337_R	1.189	0.26
294_I	303_A	1.188	0.26
187_T	217_D	1.180	0.26
330_S	346_Q	1.179	0.26
8_A	11_P	1.179	0.26
330_S	333_T	1.176	0.26
306_Y	320_Q	1.165	0.25
286_F	329_V	1.161	0.25
37_E	115_T	1.160	0.25
292_P	295_R	1.151	0.25
127_P	283_W	1.138	0.25
87_I	130_L	1.131	0.24
206_D	286_F	1.131	0.24
122_W	292_P	1.123	0.24
305_E	316_A	1.120	0.24
142_F	226_V	1.114	0.24
42_Q	84_I	1.114	0.24
15_G	22_C	1.105	0.24
199_S	260_A	1.102	0.23
262_I	279_V	1.100	0.23
87_I	308_V	1.099	0.23
131_L	143_E	1.090	0.23
88_F	168_L	1.087	0.23
250_W	287_C	1.085	0.23
89_F	300_F	1.079	0.23
45_L	48_Y	1.076	0.23
334_I	340_E	1.074	0.23
44_D	102_Y	1.065	0.22
88_F	184_M	1.064	0.22
195_E	286_F	1.056	0.22
25_K	134_D	1.054	0.22
119_V	212_G	1.053	0.22
137_E	248_V	1.045	0.22
330_S	336_S	1.036	0.22
85_W	335_S	1.033	0.21
345_L	348_E	1.028	0.21
64_H	82_L	1.027	0.21
22_C	119_V	1.017	0.21
86_G	227_L	1.017	0.21
287_C	294_I	1.017	0.21
102_Y	214_T	1.005	0.21
129_L	168_L	1.003	0.21
98_I	172_Y	1.000	0.21
60_F	86_G	0.993	0.20
85_W	300_F	0.992	0.20
102_Y	145_V	0.991	0.20
122_W	174_I	0.989	0.20
103_L	142_F	0.985	0.20
116_R	321_A	0.977	0.20
45_L	324_A	0.977	0.20
224_N	246_S	0.975	0.20
6_R	22_C	0.970	0.20
11_P	21_C	0.967	0.20
283_W	301_A	0.967	0.20
23_G	189_F	0.966	0.20
132_L	305_E	0.961	0.20
84_I	186_F	0.955	0.19
173_P	329_V	0.953	0.19
162_L	323_L	0.952	0.19
115_T	334_I	0.947	0.19
70_M	88_F	0.944	0.19
128_A	153_V	0.937	0.19
300_F	306_Y	0.934	0.19
120_E	332_S	0.932	0.19
166_G	343_S	0.930	0.19
284_K	333_T	0.926	0.19
109_S	259_A	0.924	0.19
103_L	153_V	0.920	0.19
296_K	330_S	0.919	0.19
308_V	320_Q	0.913	0.18
57_I	258_T	0.909	0.18
70_M	135_L	0.907	0.18
48_Y	97_T	0.906	0.18
116_R	336_S	0.894	0.18
15_G	18_Y	0.894	0.18
11_P	14_S	0.892	0.18
9_P	12_C	0.891	0.18
56_S	86_G	0.891	0.18
19_K	22_C	0.889	0.18
172_Y	300_F	0.889	0.18
262_I	338_Y	0.888	0.18
145_V	162_L	0.882	0.18
296_K	299_A	0.882	0.18
125_M	197_L	0.878	0.18
165_V	197_L	0.878	0.18
210_K	301_A	0.877	0.18
96_K	148_A	0.873	0.17
98_I	130_L	0.872	0.17
317_S	323_L	0.870	0.17
9_P	17_K	0.870	0.17
304_V	308_V	0.868	0.17
283_W	330_S	0.866	0.17
11_P	23_G	0.862	0.17
292_P	296_K	0.861	0.17
115_T	326_K	0.859	0.17
294_I	306_Y	0.858	0.17
71_D	217_D	0.853	0.17
27_V	32_E	0.853	0.17
252_N	329_V	0.850	0.17
23_G	129_L	0.849	0.17
122_W	324_A	0.848	0.17
66_F	99_F	0.848	0.17
8_A	57_I	0.847	0.17
78_S	173_P	0.843	0.17
69_A	143_E	0.838	0.17
204_Y	328_G	0.836	0.17
122_W	286_F	0.836	0.17
44_D	300_F	0.835	0.17
80_F	266_M	0.835	0.17
122_W	182_F	0.834	0.17
217_D	251_A	0.834	0.17
337_R	340_E	0.832	0.16
119_V	273_T	0.830	0.16
162_L	298_E	0.828	0.16
85_W	122_W	0.828	0.16
17_K	22_C	0.828	0.16
320_Q	335_S	0.828	0.16
91_P	98_I	0.826	0.16
109_S	215_P	0.826	0.16
343_S	348_E	0.824	0.16
262_I	304_V	0.823	0.16
9_P	19_K	0.817	0.16
130_L	172_Y	0.816	0.16
38_A	42_Q	0.805	0.16
115_T	173_P	0.805	0.16
140_I	214_T	0.801	0.16
128_A	144_D	0.797	0.16
100_E	348_E	0.795	0.16
256_K	323_L	0.793	0.16
171_G	214_T	0.793	0.16
153_V	172_Y	0.791	0.16
119_V	174_I	0.790	0.16
333_T	339_K	0.790	0.16
36_K	153_V	0.788	0.16
86_G	127_P	0.785	0.15
45_L	320_Q	0.784	0.15
82_L	115_T	0.780	0.15
78_S	185_Q	0.777	0.15
200_K	268_G	0.776	0.15
296_K	335_S	0.775	0.15
9_P	13_G	0.773	0.15
219_M	286_F	0.772	0.15
45_L	99_F	0.772	0.15
102_Y	263_E	0.768	0.15
326_K	340_E	0.768	0.15
49_A	320_Q	0.767	0.15
102_Y	106_K	0.766	0.15
175_H	329_V	0.765	0.15
84_I	153_V	0.765	0.15
57_I	213_K	0.763	0.15
94_G	273_T	0.762	0.15
85_W	223_F	0.761	0.15
261_A	297_P	0.758	0.15
329_V	334_I	0.756	0.15
127_P	219_M	0.749	0.15
174_I	177_A	0.748	0.15
137_E	206_D	0.748	0.15
76_D	109_S	0.746	0.15
56_S	142_F	0.744	0.15
53_H	250_W	0.744	0.15
76_D	323_L	0.743	0.15
23_G	132_L	0.741	0.15
16_K	132_L	0.739	0.15
49_A	153_V	0.736	0.14
204_Y	218_F	0.735	0.14
96_K	145_V	0.735	0.14
122_W	296_K	0.731	0.14
271_Y	323_L	0.731	0.14
9_P	18_Y	0.727	0.14
330_S	339_K	0.727	0.14
90_H	130_L	0.726	0.14
56_S	95_E	0.725	0.14
305_E	337_R	0.725	0.14
177_A	246_S	0.725	0.14
52_V	150_Q	0.723	0.14
45_L	245_V	0.721	0.14
131_L	218_F	0.721	0.14
71_D	157_A	0.720	0.14
9_P	21_C	0.720	0.14
84_I	184_M	0.719	0.14
18_Y	25_K	0.718	0.14
122_W	258_T	0.718	0.14
42_Q	183_F	0.717	0.14
120_E	123_Q	0.714	0.14
22_C	44_D	0.713	0.14
231_L	323_L	0.710	0.14
69_A	137_E	0.705	0.14
98_I	147_T	0.703	0.14
343_S	346_Q	0.698	0.14
57_I	301_A	0.698	0.14
243_A	249_E	0.695	0.14
13_G	20_K	0.694	0.14
42_Q	153_V	0.694	0.14
58_S	121_S	0.691	0.14
306_Y	319_S	0.691	0.14
123_Q	306_Y	0.689	0.14
191_V	310_A	0.689	0.14
48_Y	85_W	0.688	0.14
103_L	187_T	0.687	0.13
133_K	141_H	0.687	0.13
42_Q	49_A	0.685	0.13
306_Y	310_A	0.684	0.13
194_T	341_I	0.684	0.13
45_L	283_W	0.683	0.13
304_V	329_V	0.681	0.13
201_V	256_K	0.679	0.13
307_Y	345_L	0.678	0.13
118_I	139_I	0.676	0.13
148_A	231_L	0.675	0.13
204_Y	207_A	0.675	0.13
48_Y	185_Q	0.674	0.13
24_S	34_A	0.671	0.13
128_A	258_T	0.668	0.13
16_K	22_C	0.664	0.13
283_W	300_F	0.663	0.13
169_I	187_T	0.662	0.13
102_Y	198_I	0.660	0.13
192_K	261_A	0.657	0.13
202_K	299_A	0.656	0.13
84_I	87_I	0.654	0.13
320_Q	338_Y	0.648	0.13
97_T	306_Y	0.647	0.13
41_I	86_G	0.646	0.13
214_T	248_V	0.646	0.13
99_F	110_I	0.645	0.13
6_R	9_P	0.644	0.13
202_K	231_L	0.643	0.13
303_A	336_S	0.642	0.13
156_D	171_G	0.641	0.13
47_E	52_V	0.640	0.13
60_F	64_H	0.640	0.13
141_H	282_I	0.639	0.13
277_P	322_K	0.639	0.13
89_F	130_L	0.639	0.13
177_A	332_S	0.638	0.13
75_K	88_F	0.637	0.13
201_V	325_K	0.634	0.13
48_Y	101_E	0.632	0.12
72_R	94_G	0.630	0.12
103_L	132_L	0.629	0.12
41_I	44_D	0.628	0.12
321_A	325_K	0.627	0.12
129_L	331_A	0.624	0.12
81_N	86_G	0.624	0.12
303_A	323_L	0.623	0.12
100_E	148_A	0.623	0.12
52_V	146_I	0.623	0.12
8_A	13_G	0.621	0.12
207_A	322_K	0.620	0.12
171_G	242_K	0.620	0.12
294_I	300_F	0.619	0.12
88_F	99_F	0.619	0.12
45_L	308_V	0.619	0.12
287_C	324_A	0.618	0.12
258_T	287_C	0.617	0.12
110_I	160_Q	0.616	0.12
84_I	172_Y	0.615	0.12
332_S	348_E	0.615	0.12
127_P	306_Y	0.615	0.12
80_F	118_I	0.614	0.12
107_G	348_E	0.610	0.12
143_E	192_K	0.607	0.12
149_K	302_A	0.604	0.12
79_V	86_G	0.604	0.12
88_F	272_P	0.603	0.12
296_K	336_S	0.603	0.12
296_K	333_T	0.602	0.12
149_K	205_A	0.601	0.12
231_L	274_E	0.599	0.12
320_Q	325_K	0.598	0.12
78_S	266_M	0.597	0.12
83_G	172_Y	0.597	0.12
175_H	279_V	0.597	0.12
257_E	297_P	0.596	0.12
26_V	133_K	0.596	0.12
188_I	333_T	0.595	0.12
189_F	262_I	0.595	0.12
153_V	343_S	0.594	0.12
336_S	339_K	0.593	0.12
299_A	304_V	0.592	0.12
57_I	269_E	0.591	0.12
129_L	151_F	0.590	0.12
92_L	229_A	0.589	0.12
330_S	337_R	0.588	0.12
341_I	345_L	0.586	0.12
102_Y	259_A	0.586	0.12
320_Q	334_I	0.586	0.12
88_F	91_P	0.584	0.12
90_H	140_I	0.583	0.12
70_M	251_A	0.580	0.12
127_P	224_N	0.578	0.12
85_W	98_I	0.577	0.12
49_A	95_E	0.576	0.12
191_V	289_K	0.574	0.11
300_F	347_D	0.574	0.11
147_T	334_I	0.574	0.11
125_M	302_A	0.572	0.11
24_S	327_Y	0.572	0.11
11_P	328_G	0.571	0.11
153_V	221_Q	0.571	0.11
165_V	290_K	0.570	0.11
175_H	286_F	0.567	0.11
13_G	37_E	0.566	0.11
81_N	175_H	0.565	0.11
103_L	173_P	0.564	0.11
192_K	323_L	0.564	0.11
48_Y	137_E	0.564	0.11
94_G	119_V	0.562	0.11
48_Y	222_E	0.560	0.11
82_L	122_W	0.559	0.11
45_L	306_Y	0.559	0.11
225_N	333_T	0.558	0.11
194_T	279_V	0.557	0.11
217_D	322_K	0.556	0.11
173_P	183_F	0.554	0.11
48_Y	74_T	0.550	0.11
35_A	324_A	0.549	0.11
124_S	203_K	0.548	0.11
73_Q	286_F	0.547	0.11
97_T	302_A	0.545	0.11
82_L	300_F	0.545	0.11
130_L	194_T	0.544	0.11
329_V	336_S	0.544	0.11
92_L	275_L	0.543	0.11
84_I	88_F	0.542	0.11
201_V	212_G	0.542	0.11
64_H	340_E	0.541	0.11
104_Q	325_K	0.540	0.11
57_I	75_K	0.540	0.11
142_F	187_T	0.539	0.11
254_L	303_A	0.537	0.11
302_A	330_S	0.537	0.11
258_T	300_F	0.536	0.11
91_P	121_S	0.536	0.11
116_R	334_I	0.534	0.11
320_Q	333_T	0.533	0.11
122_W	190_P	0.530	0.11
132_L	169_I	0.529	0.11
49_A	297_P	0.529	0.11
70_M	276_I	0.528	0.11
219_M	248_V	0.527	0.11
147_T	293_V	0.524	0.11
144_D	219_M	0.522	0.11
253_D	339_K	0.521	0.11
99_F	287_C	0.520	0.11
164_P	174_I	0.520	0.11
25_K	278_A	0.520	0.11
49_A	182_F	0.519	0.11
129_L	180_A	0.519	0.11
121_S	174_I	0.517	0.11
117_E	333_T	0.517	0.11
49_A	266_M	0.517	0.11
210_K	245_V	0.516	0.11
148_A	280_I	0.515	0.11
169_I	172_Y	0.514	0.11
282_I	307_Y	0.514	0.11
247_T	266_M	0.514	0.11
198_I	308_V	0.514	0.11
192_K	219_M	0.513	0.11
295_R	333_T	0.512	0.10
329_V	340_E	0.512	0.10
164_P	295_R	0.511	0.10
142_F	149_K	0.510	0.10
141_H	144_D	0.508	0.10
48_Y	107_G	0.508	0.10
73_Q	266_M	0.508	0.10
252_N	289_K	0.507	0.10
178_E	337_R	0.507	0.10
35_A	38_A	0.507	0.10
80_F	84_I	0.507	0.10
323_L	327_Y	0.505	0.10
253_D	341_I	0.504	0.10
63_Q	150_Q	0.504	0.10
35_A	181_E	0.504	0.10
168_L	188_I	0.502	0.10
90_H	170_L	0.502	0.10
295_R	332_S	0.502	0.10
114_K	266_M	0.500	0.10

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1ozbI	1	0.067	99	0.878	Contact Map
2jq5A	1	0.3045	98.2	0.905	Contact Map
1aisB	1	0.5363	96.5	0.93	Contact Map
1c9bA	1	0.4944	96.1	0.933	Contact Map
3g33B	2	0.5223	93.6	0.942	Contact Map
4bbrM	1	0.3855	92.9	0.944	Contact Map
2i9wA	1	0.3408	92	0.945	Contact Map
2w96A	1	0.5866	91.4	0.946	Contact Map
4gfkA	2	0.176	91.3	0.946	Contact Map
4ac0A	2	0.1788	90.8	0.947	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.011 seconds.