YLBL - BACSU - GREMLIN Contacts

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YLBL - Uncharacterized protein YlbL

UniProt:	O34470	Sequences: MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEIVPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQSAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMSLEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKIVPVDTMQDAIDYLNKLKAKST	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	341 (313)
Sequences:	1056 (817)
Seq/√Len:	46.2

BACSU - YLBL

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
265_D	269_K	6.198	1.00
114_A	326_M	5.359	1.00
167_D	171_S	5.295	1.00
153_S	181_K	5.253	1.00
182_I	191_V	4.602	1.00
177_K	192_T	3.881	1.00
118_K	327_Q	3.870	1.00
263_T	271_G	3.724	1.00
36_T	230_I	3.724	1.00
165_L	169_I	3.488	1.00
293_A	320_I	3.325	1.00
327_Q	331_D	3.190	1.00
181_K	188_E	2.960	1.00
55_S	257_D	2.933	1.00
290_I	336_L	2.913	1.00
174_A	205_A	2.765	1.00
295_N	324_D	2.707	1.00
51_K	251_D	2.643	1.00
182_I	189_K	2.569	1.00
179_T	190_R	2.467	1.00
167_D	170_S	2.466	1.00
91_E	99_R	2.452	1.00
276_I	293_A	2.405	1.00
165_L	171_S	2.345	1.00
48_Y	248_T	2.342	1.00
92_S	95_E	2.277	1.00
237_L	323_V	2.254	1.00
272_P	296_Q	2.247	1.00
146_E	184_R	2.246	1.00
138_N	142_K	2.200	1.00
119_A	244_Y	2.194	1.00
290_I	321_V	2.158	1.00
292_F	332_Y	2.135	1.00
42_I	242_E	2.116	1.00
244_Y	326_M	2.100	1.00
240_S	326_M	2.093	1.00
52_G	255_G	2.080	1.00
122_K	127_F	2.062	1.00
166_I	169_I	2.058	0.99
168_Y	171_S	2.035	0.99
237_L	270_V	1.968	0.99
81_V	86_I	1.924	0.99
116_Y	223_I	1.862	0.99
321_V	332_Y	1.853	0.99
53_S	257_D	1.846	0.99
180_L	207_I	1.840	0.99
152_I	183_E	1.834	0.99
258_I	333_L	1.796	0.99
35_A	55_S	1.746	0.98
238_M	260_G	1.740	0.98
19_V	23_I	1.684	0.98
324_D	328_D	1.606	0.97
173_K	176_D	1.595	0.97
137_E	142_K	1.591	0.97
69_Y	80_I	1.580	0.97
55_S	288_K	1.557	0.96
295_N	322_P	1.552	0.96
135_V	139_M	1.529	0.96
150_K	183_E	1.488	0.95
56_L	230_I	1.482	0.95
118_K	326_M	1.477	0.95
118_K	244_Y	1.430	0.94
29_I	72_A	1.428	0.94
77_Y	313_D	1.417	0.94
166_I	170_S	1.410	0.94
168_Y	172_K	1.396	0.94
152_I	181_K	1.372	0.93
256_Y	289_D	1.362	0.93
321_V	336_L	1.361	0.93
100_Q	103_M	1.360	0.93
21_S	67_F	1.344	0.92
31_K	78_Y	1.335	0.92
166_I	171_S	1.334	0.92
162_A	213_T	1.311	0.91
195_L	205_A	1.309	0.91
165_L	168_Y	1.309	0.91
290_I	333_L	1.305	0.91
280_V	318_M	1.303	0.91
225_F	243_I	1.292	0.91
261_T	294_P	1.291	0.91
36_T	56_L	1.283	0.90
244_Y	330_I	1.283	0.90
8_S	12_V	1.277	0.90
237_L	329_A	1.277	0.90
50_E	251_D	1.276	0.90
72_A	78_Y	1.269	0.90
169_I	172_K	1.265	0.90
333_L	337_K	1.260	0.89
114_A	240_S	1.250	0.89
197_Q	203_D	1.245	0.89
184_R	191_V	1.229	0.88
48_Y	249_K	1.221	0.88
44_V	69_Y	1.218	0.88
37_E	53_S	1.204	0.87
209_V	213_T	1.198	0.87
296_Q	324_D	1.192	0.87
96_Y	100_Q	1.191	0.87
108_Q	239_M	1.190	0.87
290_I	332_Y	1.182	0.86
112_V	223_I	1.181	0.86
42_I	195_L	1.176	0.86
240_S	244_Y	1.175	0.86
70_V	74_M	1.173	0.86
140_P	196_K	1.167	0.86
237_L	240_S	1.164	0.85
75_H	78_Y	1.154	0.85
79_E	278_Q	1.153	0.85
272_P	297_N	1.152	0.85
256_Y	336_L	1.149	0.85
57_M	280_V	1.148	0.85
293_A	314_I	1.142	0.84
92_S	120_G	1.140	0.84
161_S	166_I	1.140	0.84
253_T	258_I	1.128	0.84
152_I	188_E	1.127	0.83
42_I	243_I	1.127	0.83
58_T	235_A	1.124	0.83
165_L	170_S	1.121	0.83
141_A	193_L	1.117	0.83
38_L	238_M	1.114	0.83
153_S	156_G	1.110	0.83
56_L	242_E	1.109	0.82
155_D	170_S	1.100	0.82
284_D	316_S	1.095	0.82
183_E	188_E	1.080	0.81
145_I	180_L	1.074	0.80
35_A	318_M	1.065	0.80
108_Q	227_I	1.054	0.79
180_L	193_L	1.052	0.79
181_K	190_R	1.045	0.79
108_Q	235_A	1.037	0.78
54_L	245_N	1.030	0.77
292_F	323_V	1.024	0.77
41_L	227_I	1.022	0.77
154_A	180_L	1.015	0.76
50_E	245_N	1.008	0.76
252_E	330_I	0.998	0.75
140_P	207_I	0.989	0.75
240_S	330_I	0.987	0.74
57_M	259_A	0.972	0.73
112_V	225_F	0.969	0.73
44_V	246_Q	0.969	0.73
254_K	337_K	0.965	0.73
118_K	330_I	0.964	0.73
292_F	321_V	0.964	0.73
183_E	186_E	0.963	0.73
250_P	337_K	0.959	0.72
180_L	191_V	0.959	0.72
134_S	210_S	0.957	0.72
14_L	17_I	0.956	0.72
28_Y	292_F	0.946	0.71
245_N	252_E	0.942	0.71
34_E	58_T	0.941	0.71
233_P	274_G	0.939	0.71
191_V	195_L	0.939	0.71
104_M	227_I	0.930	0.70
25_L	69_Y	0.929	0.70
42_I	227_I	0.923	0.69
56_L	60_K	0.918	0.69
315_D	318_M	0.917	0.69
277_D	313_D	0.916	0.69
56_L	235_A	0.913	0.68
231_G	235_A	0.909	0.68
227_I	239_M	0.905	0.68
323_V	329_A	0.904	0.68
18_A	22_F	0.904	0.68
284_D	318_M	0.898	0.67
299_A	310_T	0.895	0.67
227_I	244_Y	0.891	0.67
104_M	108_Q	0.890	0.66
328_D	331_D	0.890	0.66
120_G	182_I	0.887	0.66
88_E	91_E	0.880	0.66
173_K	312_K	0.879	0.66
118_K	240_S	0.878	0.65
56_L	104_M	0.866	0.64
245_N	250_P	0.865	0.64
99_R	225_F	0.855	0.63
277_D	309_K	0.854	0.63
58_T	239_M	0.854	0.63
41_L	276_I	0.852	0.63
94_K	137_E	0.852	0.63
108_Q	243_I	0.847	0.63
270_V	329_A	0.847	0.63
144_K	191_V	0.841	0.62
171_S	178_V	0.838	0.62
298_G	324_D	0.837	0.62
295_N	298_G	0.832	0.61
209_V	322_P	0.830	0.61
132_A	207_I	0.825	0.61
113_I	159_Y	0.824	0.60
113_I	217_V	0.822	0.60
330_I	333_L	0.821	0.60
196_K	199_P	0.820	0.60
176_D	195_L	0.817	0.60
282_A	286_A	0.815	0.60
13_I	17_I	0.809	0.59
30_T	278_Q	0.807	0.59
84_E	89_E	0.807	0.59
293_A	312_K	0.805	0.59
178_V	207_I	0.801	0.58
51_K	222_D	0.799	0.58
296_Q	299_A	0.795	0.58
138_N	196_K	0.795	0.58
31_K	60_K	0.792	0.57
95_E	98_K	0.790	0.57
230_I	235_A	0.789	0.57
200_D	203_D	0.789	0.57
250_P	334_N	0.789	0.57
28_Y	280_V	0.788	0.57
56_L	228_E	0.788	0.57
284_D	317_N	0.787	0.57
116_Y	219_V	0.781	0.56
56_L	227_I	0.778	0.56
63_P	83_D	0.778	0.56
107_S	239_M	0.778	0.56
227_I	230_I	0.775	0.56
252_E	333_L	0.774	0.56
41_L	55_S	0.771	0.55
83_D	87_K	0.769	0.55
272_P	298_G	0.767	0.55
138_N	143_G	0.767	0.55
150_K	214_D	0.766	0.55
172_K	204_R	0.766	0.55
37_E	242_E	0.763	0.55
104_M	228_E	0.762	0.54
146_E	158_N	0.757	0.54
71_W	75_H	0.755	0.54
34_E	297_N	0.754	0.54
282_A	310_T	0.753	0.54
31_K	62_G	0.752	0.54
57_M	291_F	0.751	0.53
167_D	180_L	0.750	0.53
237_L	320_I	0.746	0.53
241_L	333_L	0.746	0.53
73_K	119_A	0.743	0.53
330_I	337_K	0.743	0.53
69_Y	73_K	0.742	0.53
185_E	224_D	0.739	0.52
108_Q	231_G	0.738	0.52
187_K	192_T	0.737	0.52
157_K	170_S	0.736	0.52
58_T	231_G	0.732	0.52
138_N	141_A	0.729	0.51
147_V	151_I	0.729	0.51
68_T	245_N	0.729	0.51
30_T	91_E	0.725	0.51
65_N	68_T	0.725	0.51
314_I	318_M	0.725	0.51
58_T	282_A	0.725	0.51
52_G	253_T	0.724	0.51
143_G	146_E	0.724	0.51
156_G	159_Y	0.720	0.50
177_K	195_L	0.719	0.50
151_I	207_I	0.717	0.50
311_A	320_I	0.716	0.50
71_W	309_K	0.712	0.50
64_A	83_D	0.712	0.50
129_G	150_K	0.710	0.49
136_V	139_M	0.710	0.49
332_Y	336_L	0.710	0.49
259_A	288_K	0.706	0.49
321_V	333_L	0.705	0.49
153_S	188_E	0.701	0.48
132_A	209_V	0.701	0.48
110_N	265_D	0.699	0.48
239_M	293_A	0.697	0.48
99_R	139_M	0.695	0.48
237_L	244_Y	0.694	0.48
272_P	324_D	0.694	0.48
310_T	313_D	0.693	0.48
273_I	276_I	0.690	0.47
51_K	187_K	0.688	0.47
24_K	63_P	0.687	0.47
57_M	113_I	0.686	0.47
42_I	56_L	0.685	0.47
13_I	105_K	0.682	0.47
281_V	314_I	0.682	0.47
113_I	117_Q	0.679	0.46
146_E	216_N	0.679	0.46
57_M	281_V	0.675	0.46
99_R	116_Y	0.673	0.46
44_V	65_N	0.672	0.46
58_T	230_I	0.672	0.46
240_S	265_D	0.671	0.46
77_Y	285_K	0.671	0.46
173_K	205_A	0.666	0.45
184_R	189_K	0.665	0.45
103_M	106_S	0.665	0.45
225_F	239_M	0.664	0.45
217_V	278_Q	0.663	0.45
132_A	145_I	0.661	0.45
244_Y	318_M	0.658	0.44
157_K	181_K	0.658	0.44
56_L	336_L	0.654	0.44
207_I	323_V	0.654	0.44
131_Y	214_D	0.652	0.44
154_A	205_A	0.650	0.44
48_Y	139_M	0.650	0.44
51_K	80_I	0.649	0.43
40_S	137_E	0.648	0.43
237_L	310_T	0.647	0.43
310_T	314_I	0.644	0.43
44_V	47_G	0.644	0.43
156_G	179_T	0.642	0.43
311_A	314_I	0.640	0.43
155_D	224_D	0.639	0.42
166_I	325_T	0.638	0.42
121_K	219_V	0.638	0.42
42_I	80_I	0.638	0.42
233_P	291_F	0.637	0.42
276_I	298_G	0.637	0.42
82_P	240_S	0.637	0.42
153_S	172_K	0.636	0.42
182_I	193_L	0.635	0.42
41_L	239_M	0.632	0.42
154_A	207_I	0.629	0.41
38_L	242_E	0.628	0.41
42_I	249_K	0.628	0.41
55_S	100_Q	0.628	0.41
309_K	315_D	0.626	0.41
61_V	68_T	0.626	0.41
109_E	215_R	0.624	0.41
7_F	176_D	0.624	0.41
145_I	182_I	0.623	0.41
34_E	278_Q	0.620	0.41
57_M	61_V	0.620	0.41
54_L	57_M	0.620	0.41
23_I	326_M	0.620	0.41
156_G	328_D	0.619	0.41
92_S	162_A	0.618	0.40
52_G	251_D	0.617	0.40
72_A	80_I	0.617	0.40
23_I	26_P	0.616	0.40
112_V	217_V	0.615	0.40
92_S	146_E	0.613	0.40
59_V	325_T	0.612	0.40
154_A	311_A	0.609	0.40
135_V	145_I	0.608	0.39
310_T	320_I	0.606	0.39
328_D	332_Y	0.605	0.39
187_K	237_L	0.605	0.39
173_K	299_A	0.604	0.39
44_V	243_I	0.603	0.39
116_Y	222_D	0.603	0.39
230_I	239_M	0.602	0.39
167_D	172_K	0.602	0.39
18_A	155_D	0.602	0.39
132_A	151_I	0.600	0.39
237_L	281_V	0.599	0.39
148_G	187_K	0.597	0.38
42_I	284_D	0.597	0.38
117_Q	122_K	0.597	0.38
10_M	137_E	0.596	0.38
182_I	190_R	0.596	0.38
64_A	96_Y	0.595	0.38
106_S	130_I	0.592	0.38
206_G	210_S	0.592	0.38
104_M	230_I	0.592	0.38
90_G	332_Y	0.592	0.38
105_K	150_K	0.592	0.38
195_L	276_I	0.591	0.38
120_G	203_D	0.590	0.38
22_F	136_V	0.590	0.38
76_P	313_D	0.589	0.38
293_A	310_T	0.588	0.38
27_Y	199_P	0.587	0.38
21_S	24_K	0.586	0.37
181_K	194_T	0.583	0.37
140_P	144_K	0.582	0.37
23_I	103_M	0.582	0.37
331_D	335_K	0.581	0.37
35_A	281_V	0.580	0.37
153_S	190_R	0.579	0.37
113_I	210_S	0.578	0.37
273_I	293_A	0.578	0.37
109_E	112_V	0.577	0.37
35_A	53_S	0.577	0.37
72_A	104_M	0.576	0.37
57_M	66_P	0.575	0.36
198_F	206_G	0.575	0.36
41_L	240_S	0.575	0.36
293_A	322_P	0.574	0.36
38_L	73_K	0.571	0.36
38_L	61_V	0.571	0.36
57_M	237_L	0.571	0.36
37_E	228_E	0.571	0.36
69_Y	114_A	0.569	0.36
70_V	154_A	0.569	0.36
37_E	257_D	0.568	0.36
106_S	214_D	0.567	0.36
38_L	56_L	0.563	0.35
25_L	114_A	0.562	0.35
148_G	209_V	0.562	0.35
120_G	321_V	0.560	0.35
105_K	112_V	0.559	0.35
96_Y	206_G	0.556	0.35
16_L	65_N	0.556	0.35
55_S	286_A	0.556	0.35
154_A	167_D	0.552	0.34
144_K	182_I	0.551	0.34
48_Y	250_P	0.548	0.34
26_P	52_G	0.548	0.34
290_I	323_V	0.547	0.34
62_G	114_A	0.547	0.34
240_S	264_I	0.545	0.34
245_N	253_T	0.544	0.34
35_A	257_D	0.542	0.33
47_G	50_E	0.541	0.33
258_I	290_I	0.538	0.33
155_D	161_S	0.538	0.33
10_M	18_A	0.537	0.33
74_M	169_I	0.536	0.33
297_N	324_D	0.536	0.33
8_S	16_L	0.536	0.33
39_A	171_S	0.535	0.33
187_K	224_D	0.534	0.33
280_V	309_K	0.534	0.33
224_D	289_D	0.532	0.33
130_I	318_M	0.532	0.33
111_A	225_F	0.532	0.33
177_K	194_T	0.531	0.33
16_L	153_S	0.531	0.33
186_E	216_N	0.529	0.32
15_I	19_V	0.527	0.32
159_Y	167_D	0.527	0.32
290_I	330_I	0.526	0.32
12_V	226_E	0.526	0.32
240_S	269_K	0.525	0.32
161_S	165_L	0.525	0.32
80_I	218_K	0.524	0.32
12_V	80_I	0.524	0.32
35_A	110_N	0.524	0.32
82_P	272_P	0.524	0.32
140_P	199_P	0.523	0.32
35_A	286_A	0.523	0.32
42_I	228_E	0.521	0.32
43_K	249_K	0.521	0.32
94_K	185_E	0.520	0.32
237_L	333_L	0.519	0.31
55_S	113_I	0.518	0.31
64_A	87_K	0.518	0.31
256_Y	337_K	0.517	0.31
211_L	240_S	0.517	0.31
146_E	331_D	0.517	0.31
90_G	137_E	0.516	0.31
281_V	285_K	0.516	0.31
57_M	231_G	0.516	0.31
194_T	222_D	0.515	0.31
54_L	242_E	0.514	0.31
282_A	294_P	0.514	0.31
312_K	315_D	0.514	0.31
108_Q	242_E	0.513	0.31
57_M	122_K	0.513	0.31
264_I	326_M	0.513	0.31
258_I	289_D	0.512	0.31
309_K	313_D	0.511	0.31
240_S	334_N	0.510	0.31
168_Y	247_L	0.510	0.31
325_T	328_D	0.510	0.31
203_D	328_D	0.507	0.30
9_W	12_V	0.506	0.30
166_I	172_K	0.506	0.30
108_Q	278_Q	0.505	0.30
69_Y	326_M	0.504	0.30
113_I	266_V	0.504	0.30
24_K	94_K	0.503	0.30
40_S	173_K	0.502	0.30
128_N	330_I	0.500	0.30
132_A	264_I	0.500	0.30

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3wu4A	3	0.5044	99.8	0.822	Contact Map
1z0wA	3	0.5249	99.7	0.832	Contact Map
2x36A	3	0.5191	99.7	0.833	Contact Map
3k1jA	4	0.915	99.7	0.837	Contact Map
1xhkA	2	0.4927	99.7	0.838	Contact Map
3m6aA	3	0.8299	99.7	0.84	Contact Map
4fwgA	3	0.8827	99.6	0.849	Contact Map
2kl1A	1	0.2493	99.3	0.874	Contact Map
2i4sA	1	0.2991	99.3	0.874	Contact Map
2kjpA	1	0.261	99.3	0.875	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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