HISZ - BACSU - GREMLIN Contacts

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HISZ - ATP phosphoribosyltransferase regulatory subunit

UniProt:	O34459	Sequences: MFMFEKPHGMRDTLPGLYETKKKVRRSLTDLIDKWGYQFMETPTLEFYDTVGVQSAIEEQQLFKLLDQDGKTLVLRPDMTGPIARVAASKLLKHGHPLRVGYAANVFRAQEREGGRPAEFEQVGVELIGDGTTSADAEVIALVVGALKNAGLASFKIAIGHAGIADALFVEVLGNVERADVLRRFLYEKNYVGYREHVKSLPLSSIDKSRLLELLELRGGIEVCGRAEEIVDSAQGKSVVDELKALWDILEDYGCTENVRLDLNMVSHMSYYTGILFEVYAENVGFVIGSGGRYNKLLGHFDSPAPATGFGLRIDRLIEALHMKDEPCEIDAVIFSKEQRAQAIAYANEERMKGNKVVLQDLSGIENIDQMTKSFANVTYFIGARKEEQNG	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	391 (366)
Sequences:	6060 (3816)
Seq/√Len:	199.5

ECOLI - SYH
BACSU - HISZ SYH
HALSA - SYH
SULSO - SYH

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
228_E	244_K	4.301	1.00
158_A	262_D	3.985	1.00
299_G	304_P	3.866	1.00
102_Y	124_G	3.665	1.00
251_E	259_V	3.265	1.00
137_A	249_I	2.796	1.00
30_D	149_N	2.735	1.00
66_L	70_G	2.698	1.00
27_S	149_N	2.653	1.00
32_I	123_V	2.598	1.00
143_V	279_V	2.553	1.00
10_M	45_L	2.463	1.00
28_L	146_A	2.455	1.00
347_A	357_V	2.440	1.00
35_W	145_G	2.409	1.00
145_G	348_N	2.329	1.00
34_K	149_N	2.301	1.00
342_Q	345_A	2.278	1.00
156_K	260_R	2.277	1.00
243_L	261_L	2.213	1.00
17_L	322_H	2.203	1.00
26_R	30_D	2.196	1.00
22_K	39_F	2.189	1.00
64_K	72_T	2.141	1.00
20_T	322_H	2.137	1.00
23_K	27_S	2.111	1.00
143_V	289_G	2.073	1.00
181_V	233_S	2.054	1.00
127_L	135_A	2.053	1.00
48_Y	74_V	2.046	1.00
167_A	239_V	2.042	1.00
99_R	358_V	2.016	1.00
141_A	253_Y	2.011	1.00
76_R	104_A	1.961	1.00
368_I	381_F	1.957	1.00
31_L	149_N	1.949	1.00
48_Y	64_K	1.926	1.00
154_S	283_N	1.905	1.00
105_N	119_E	1.895	1.00
199_K	202_P	1.883	1.00
336_S	339_Q	1.882	1.00
167_A	236_G	1.852	1.00
125_V	142_L	1.850	1.00
7_P	45_L	1.834	1.00
44_T	107_F	1.827	1.00
84_A	298_L	1.797	1.00
334_I	347_A	1.792	1.00
252_D	341_A	1.736	1.00
156_K	282_E	1.733	1.00
29_T	39_F	1.719	1.00
180_D	184_R	1.711	1.00
247_W	261_L	1.699	1.00
248_D	341_A	1.680	1.00
241_D	245_A	1.679	1.00
247_W	259_V	1.678	1.00
158_A	260_R	1.676	1.00
237_K	241_D	1.642	1.00
22_K	29_T	1.641	1.00
345_A	349_E	1.638	1.00
158_A	280_Y	1.626	1.00
37_Y	127_L	1.607	1.00
347_A	359_L	1.606	1.00
44_T	104_A	1.604	1.00
200_S	203_L	1.592	1.00
195_R	203_L	1.591	1.00
338_E	384_A	1.591	1.00
154_S	282_E	1.585	1.00
244_K	248_D	1.580	1.00
331_D	356_K	1.574	1.00
67_D	71_K	1.564	1.00
360_Q	364_G	1.562	1.00
79_M	124_G	1.527	1.00
247_W	251_E	1.523	1.00
202_P	217_L	1.489	1.00
144_V	157_I	1.483	1.00
221_I	251_E	1.479	1.00
368_I	372_T	1.469	1.00
44_T	119_E	1.469	1.00
331_D	335_F	1.455	1.00
28_L	123_V	1.446	1.00
236_G	239_V	1.446	1.00
219_G	223_V	1.445	1.00
186_L	214_L	1.430	1.00
25_R	41_E	1.429	1.00
48_Y	72_T	1.426	1.00
144_V	148_K	1.424	1.00
19_E	38_Q	1.407	1.00
8_H	111_E	1.406	1.00
79_M	106_V	1.405	1.00
349_E	352_M	1.403	1.00
121_E	315_D	1.393	1.00
238_S	241_D	1.389	1.00
79_M	102_Y	1.386	1.00
336_S	384_A	1.383	1.00
40_M	86_V	1.379	1.00
71_K	109_A	1.377	1.00
331_D	334_I	1.373	1.00
254_G	258_N	1.364	1.00
39_F	101_G	1.359	1.00
157_I	279_V	1.358	1.00
7_P	73_L	1.347	1.00
7_P	47_F	1.343	1.00
139_V	308_T	1.342	1.00
65_L	73_L	1.342	1.00
346_Y	349_E	1.339	1.00
19_E	33_D	1.338	1.00
332_A	355_N	1.327	1.00
240_V	244_K	1.325	1.00
30_D	34_K	1.322	1.00
279_V	289_G	1.322	1.00
83_I	124_G	1.321	1.00
125_V	139_V	1.320	1.00
164_I	239_V	1.309	1.00
7_P	10_M	1.292	1.00
331_D	355_N	1.291	1.00
84_A	128_I	1.290	1.00
24_V	318_I	1.283	1.00
199_K	217_L	1.280	1.00
187_Y	207_D	1.277	1.00
245_A	248_D	1.261	1.00
64_K	74_V	1.259	1.00
44_T	105_N	1.253	1.00
145_G	352_M	1.248	1.00
145_G	149_N	1.248	1.00
246_L	275_I	1.246	1.00
348_N	352_M	1.246	1.00
128_I	298_L	1.245	1.00
204_S	208_K	1.245	1.00
88_A	301_F	1.243	1.00
164_I	236_G	1.242	1.00
123_V	314_I	1.241	1.00
366_E	369_D	1.236	1.00
28_L	32_I	1.235	1.00
69_D	109_A	1.224	1.00
16_G	19_E	1.219	1.00
33_D	101_G	1.216	1.00
330_I	333_V	1.212	1.00
6_K	89_S	1.210	1.00
163_G	242_E	1.209	1.00
144_V	258_N	1.194	1.00
228_E	241_D	1.193	1.00
339_Q	342_Q	1.192	1.00
11_R	315_D	1.186	1.00
68_Q	109_A	1.184	1.00
347_A	351_R	1.180	1.00
120_F	311_G	1.177	1.00
131_G	306_P	1.173	1.00
29_T	101_G	1.170	1.00
222_E	225_G	1.170	1.00
184_R	187_Y	1.166	1.00
136_D	293_R	1.162	1.00
66_L	72_T	1.159	1.00
25_R	29_T	1.157	1.00
29_T	103_A	1.146	1.00
167_A	235_Q	1.146	1.00
48_Y	52_G	1.143	1.00
164_I	167_A	1.135	1.00
45_L	75_L	1.133	1.00
87_A	305_A	1.130	1.00
179_A	183_R	1.130	1.00
204_S	207_D	1.125	1.00
248_D	251_E	1.125	1.00
248_D	252_D	1.124	1.00
342_Q	382_I	1.116	1.00
280_Y	287_V	1.113	1.00
37_Y	138_E	1.110	1.00
25_R	314_I	1.106	1.00
137_A	253_Y	1.105	1.00
289_G	312_L	1.100	1.00
155_F	279_V	1.099	1.00
34_K	145_G	1.098	1.00
67_D	70_G	1.095	1.00
148_K	155_F	1.091	1.00
103_A	123_V	1.088	1.00
249_I	253_Y	1.085	1.00
332_A	357_V	1.081	1.00
252_D	345_A	1.081	1.00
42_T	82_P	1.078	1.00
349_E	353_K	1.070	1.00
11_R	17_L	1.070	1.00
144_V	155_F	1.068	1.00
369_D	372_T	1.063	1.00
22_K	26_R	1.062	1.00
241_D	244_K	1.060	1.00
242_E	274_G	1.057	1.00
147_L	289_G	1.052	1.00
213_E	226_R	1.047	1.00
34_K	355_N	1.044	1.00
11_R	117_P	1.042	1.00
368_I	379_T	1.042	1.00
87_A	128_I	1.040	1.00
319_E	322_H	1.032	1.00
147_L	155_F	1.026	1.00
131_G	295_N	1.022	1.00
87_A	96_H	1.017	1.00
156_K	258_N	1.014	1.00
22_K	25_R	1.007	1.00
22_K	33_D	1.005	1.00
161_H	242_E	1.001	1.00
79_M	104_A	1.000	1.00
26_R	29_T	0.997	1.00
148_K	352_M	0.993	1.00
25_R	39_F	0.988	1.00
130_D	135_A	0.986	1.00
35_W	351_R	0.983	1.00
365_I	369_D	0.981	1.00
250_L	259_V	0.981	1.00
341_A	345_A	0.979	1.00
31_L	145_G	0.977	1.00
133_T	246_L	0.976	0.99
313_R	316_R	0.976	0.99
206_I	214_L	0.975	0.99
334_I	343_A	0.975	0.99
143_V	310_F	0.974	0.99
296_K	304_P	0.968	0.99
146_A	312_L	0.965	0.99
33_D	356_K	0.960	0.99
369_D	373_K	0.958	0.99
18_Y	39_F	0.952	0.99
127_L	139_V	0.951	0.99
24_V	150_A	0.949	0.99
133_T	242_E	0.946	0.99
245_A	249_I	0.942	0.99
360_Q	363_S	0.941	0.99
137_A	246_L	0.940	0.99
164_I	235_Q	0.927	0.99
372_T	379_T	0.925	0.99
27_S	31_L	0.921	0.99
45_L	73_L	0.920	0.99
46_E	85_R	0.919	0.99
75_L	107_F	0.919	0.99
161_H	274_G	0.919	0.99
222_E	226_R	0.919	0.99
201_L	204_S	0.911	0.99
105_N	121_E	0.907	0.99
6_K	90_K	0.906	0.99
27_S	30_D	0.901	0.99
156_K	280_Y	0.897	0.99
244_K	247_W	0.894	0.99
358_V	374_S	0.894	0.99
40_M	100_V	0.892	0.99
183_R	187_Y	0.888	0.99
134_S	340_R	0.888	0.99
67_D	73_L	0.887	0.99
281_A	288_I	0.883	0.99
335_F	379_T	0.879	0.99
145_G	148_K	0.878	0.99
40_M	83_I	0.878	0.99
253_Y	344_I	0.875	0.99
196_E	200_S	0.875	0.99
187_Y	195_R	0.873	0.99
107_F	119_E	0.869	0.99
29_T	33_D	0.866	0.99
30_D	33_D	0.864	0.99
331_D	377_N	0.863	0.99
152_L	321_L	0.862	0.99
27_S	150_A	0.860	0.99
99_R	127_L	0.859	0.99
195_R	198_V	0.857	0.99
133_T	245_A	0.855	0.99
83_I	100_V	0.849	0.99
136_D	139_V	0.847	0.99
298_L	305_A	0.846	0.99
237_K	240_V	0.845	0.99
50_T	301_F	0.843	0.99
332_A	335_F	0.841	0.99
296_K	299_G	0.841	0.99
118_A	268_H	0.839	0.98
332_A	380_Y	0.836	0.98
83_I	102_Y	0.836	0.98
267_S	290_S	0.834	0.98
133_T	137_A	0.833	0.98
178_R	181_V	0.828	0.98
102_Y	126_E	0.823	0.98
10_M	42_T	0.821	0.98
13_T	21_K	0.820	0.98
141_A	348_N	0.819	0.98
199_K	205_S	0.816	0.98
186_L	224_C	0.815	0.98
63_F	73_L	0.814	0.98
20_T	318_I	0.811	0.98
221_I	225_G	0.810	0.98
176_V	180_D	0.806	0.98
18_Y	21_K	0.805	0.98
78_D	81_G	0.803	0.98
339_Q	384_A	0.803	0.98
42_T	83_I	0.799	0.98
298_L	303_S	0.798	0.98
51_V	74_V	0.793	0.98
31_L	146_A	0.790	0.98
370_Q	374_S	0.788	0.98
118_A	313_R	0.786	0.98
31_L	35_W	0.780	0.98
161_H	239_V	0.780	0.98
225_G	244_K	0.779	0.98
345_A	348_N	0.778	0.98
197_H	223_V	0.775	0.97
185_F	189_K	0.775	0.97
125_V	310_F	0.774	0.97
177_E	180_D	0.773	0.97
181_V	185_F	0.773	0.97
132_T	245_A	0.772	0.97
167_A	274_G	0.771	0.97
214_L	223_V	0.769	0.97
22_K	101_G	0.767	0.97
62_L	74_V	0.765	0.97
21_K	25_R	0.764	0.97
265_M	276_L	0.762	0.97
164_I	274_G	0.761	0.97
274_G	295_N	0.761	0.97
350_E	357_V	0.757	0.97
189_K	223_V	0.756	0.97
148_K	258_N	0.754	0.97
332_A	350_E	0.754	0.97
37_Y	125_V	0.751	0.97
195_R	206_I	0.751	0.97
342_Q	346_Y	0.750	0.97
8_H	112_R	0.749	0.97
355_N	359_L	0.748	0.97
18_Y	22_K	0.746	0.97
332_A	378_V	0.746	0.97
140_I	250_L	0.744	0.97
37_Y	99_R	0.743	0.97
159_I	247_W	0.742	0.97
134_S	249_I	0.742	0.97
65_L	74_V	0.741	0.97
87_A	98_L	0.738	0.97
34_K	357_V	0.736	0.97
189_K	197_H	0.736	0.97
12_D	85_R	0.734	0.96
242_E	246_L	0.731	0.96
32_I	142_L	0.731	0.96
37_Y	135_A	0.731	0.96
221_I	248_D	0.731	0.96
267_S	278_E	0.730	0.96
83_I	128_I	0.728	0.96
48_Y	65_L	0.724	0.96
83_I	126_E	0.723	0.96
198_V	208_K	0.722	0.96
21_K	315_D	0.722	0.96
37_Y	142_L	0.718	0.96
32_I	125_V	0.718	0.96
365_I	368_I	0.715	0.96
110_Q	116_R	0.714	0.96
298_L	307_A	0.712	0.96
288_I	317_L	0.710	0.96
52_G	62_L	0.709	0.96
203_L	207_D	0.706	0.96
358_V	361_D	0.702	0.95
226_R	229_E	0.702	0.95
147_L	317_L	0.696	0.95
232_D	235_Q	0.693	0.95
152_L	320_A	0.693	0.95
184_R	188_E	0.693	0.95
234_A	238_S	0.693	0.95
343_A	382_I	0.692	0.95
195_R	207_D	0.692	0.95
250_L	255_C	0.689	0.95
139_V	142_L	0.686	0.95
18_Y	41_E	0.686	0.95
243_L	247_W	0.686	0.95
203_L	206_I	0.685	0.95
129_G	306_P	0.683	0.95
251_E	254_G	0.680	0.95
355_N	362_L	0.678	0.95
215_L	218_R	0.678	0.95
212_L	216_E	0.676	0.94
340_R	343_A	0.675	0.94
217_L	223_V	0.673	0.94
141_A	255_C	0.669	0.94
328_C	356_K	0.669	0.94
31_L	142_L	0.668	0.94
340_R	363_S	0.668	0.94
108_R	120_F	0.668	0.94
20_T	23_K	0.665	0.94
185_F	197_H	0.663	0.94
35_W	142_L	0.662	0.94
162_A	276_L	0.661	0.94
63_F	67_D	0.660	0.94
225_G	228_E	0.658	0.94
135_A	308_T	0.656	0.94
15_P	18_Y	0.655	0.93
135_A	361_D	0.654	0.93
210_R	213_E	0.654	0.93
14_L	86_V	0.653	0.93
21_K	41_E	0.652	0.93
41_E	105_N	0.649	0.93
140_I	159_I	0.648	0.93
217_L	224_C	0.646	0.93
44_T	76_R	0.643	0.93
372_T	383_G	0.642	0.93
199_K	219_G	0.642	0.93
185_F	227_A	0.639	0.93
12_D	46_E	0.636	0.92
100_V	126_E	0.635	0.92
161_H	275_I	0.634	0.92
346_Y	382_I	0.633	0.92
198_V	201_L	0.633	0.92
273_T	296_K	0.632	0.92
99_R	361_D	0.631	0.92
65_L	71_K	0.631	0.92
141_A	145_G	0.631	0.92
47_F	71_K	0.631	0.92
242_E	245_A	0.630	0.92
281_A	320_A	0.630	0.92
181_V	184_R	0.629	0.92
25_R	103_A	0.629	0.92
245_A	337_K	0.629	0.92
96_H	305_A	0.627	0.92
355_N	358_V	0.623	0.92
329_E	356_K	0.622	0.92
58_E	208_K	0.622	0.92
120_F	313_R	0.621	0.92
202_P	219_G	0.618	0.91
178_R	182_L	0.618	0.91
159_I	261_L	0.617	0.91
43_P	85_R	0.616	0.91
221_I	224_C	0.616	0.91
251_E	258_N	0.616	0.91
355_N	360_Q	0.615	0.91
86_V	90_K	0.615	0.91
331_D	376_A	0.614	0.91
185_F	226_R	0.613	0.91
366_E	370_Q	0.613	0.91
117_P	319_E	0.612	0.91
21_K	121_E	0.612	0.91
68_Q	73_L	0.611	0.91
144_V	279_V	0.610	0.91
5_E	89_S	0.606	0.91
154_S	258_N	0.605	0.91
167_A	233_S	0.604	0.90
146_A	150_A	0.600	0.90
343_A	357_V	0.600	0.90
287_V	290_S	0.599	0.90
267_S	313_R	0.599	0.90
330_I	334_I	0.597	0.90
322_H	325_D	0.591	0.89
116_R	313_R	0.591	0.89
66_L	69_D	0.590	0.89
358_V	363_S	0.590	0.89
228_E	237_K	0.589	0.89
32_I	146_A	0.588	0.89
196_E	199_K	0.588	0.89
219_G	222_E	0.588	0.89
272_Y	308_T	0.587	0.89
334_I	380_Y	0.586	0.89
45_L	74_V	0.585	0.89
118_A	267_S	0.585	0.89
55_S	61_Q	0.585	0.89
42_T	79_M	0.584	0.89
345_A	353_K	0.584	0.89
219_G	263_L	0.584	0.89
120_F	316_R	0.581	0.89
127_L	130_D	0.580	0.89
202_P	208_K	0.580	0.89
329_E	333_V	0.578	0.88
140_I	246_L	0.578	0.88
250_L	254_G	0.577	0.88
343_A	347_A	0.576	0.88
197_H	200_S	0.576	0.88
117_P	315_D	0.574	0.88
198_V	205_S	0.573	0.88
138_E	351_R	0.573	0.88
235_Q	239_V	0.573	0.88
45_L	65_L	0.571	0.88
334_I	346_Y	0.571	0.88
333_V	360_Q	0.568	0.88
186_L	223_V	0.568	0.88
370_Q	376_A	0.567	0.87
36_G	358_V	0.565	0.87
6_K	11_R	0.564	0.87
131_G	242_E	0.563	0.87
114_G	323_M	0.563	0.87
46_E	271_Y	0.562	0.87
17_L	20_T	0.558	0.87
87_A	100_V	0.558	0.87
198_V	203_L	0.558	0.87
240_V	247_W	0.555	0.86
155_F	258_N	0.554	0.86
225_G	229_E	0.553	0.86
239_V	274_G	0.552	0.86
231_V	236_G	0.552	0.86
143_V	312_L	0.552	0.86
43_P	46_E	0.552	0.86
223_V	227_A	0.551	0.86
110_Q	316_R	0.550	0.86
51_V	77_P	0.550	0.86
217_L	263_L	0.547	0.86
163_G	238_S	0.545	0.85
238_S	242_E	0.544	0.85
63_F	109_A	0.543	0.85
334_I	357_V	0.542	0.85
83_I	86_V	0.540	0.85
16_G	20_T	0.539	0.85
293_R	306_P	0.539	0.85
79_M	83_I	0.538	0.85
334_I	382_I	0.537	0.85
140_I	275_I	0.536	0.84
195_R	212_L	0.536	0.84
368_I	383_G	0.534	0.84
312_L	321_L	0.534	0.84
45_L	117_P	0.533	0.84
30_D	248_D	0.532	0.84
234_A	237_K	0.531	0.84
122_Q	311_G	0.530	0.84
128_I	307_A	0.530	0.84
77_P	81_G	0.529	0.84
202_P	206_I	0.529	0.84
217_L	220_G	0.528	0.84
321_L	325_D	0.528	0.84
182_L	185_F	0.528	0.84
290_S	313_R	0.527	0.83
67_D	72_T	0.526	0.83
278_E	290_S	0.526	0.83
91_L	100_V	0.526	0.83
151_G	154_S	0.522	0.83
217_L	227_A	0.522	0.83
163_G	239_V	0.520	0.83
112_R	116_R	0.519	0.82
113_E	116_R	0.519	0.82
141_A	249_I	0.518	0.82
283_N	324_K	0.517	0.82
208_K	215_L	0.516	0.82
15_P	51_V	0.516	0.82
163_G	235_Q	0.516	0.82
42_T	265_M	0.516	0.82
367_N	379_T	0.515	0.82
104_A	311_G	0.515	0.82
213_E	216_E	0.515	0.82
78_D	88_A	0.514	0.82
42_T	86_V	0.514	0.82
58_E	61_Q	0.514	0.82
337_K	340_R	0.514	0.82
131_G	304_P	0.514	0.82
350_E	355_N	0.513	0.82
214_L	217_L	0.509	0.81
189_K	195_R	0.509	0.81
224_C	244_K	0.508	0.81
290_S	311_G	0.508	0.81
232_D	237_K	0.505	0.81
28_L	106_V	0.505	0.81
19_E	39_F	0.505	0.81
137_A	255_C	0.504	0.81
31_L	34_K	0.504	0.81
331_D	357_V	0.503	0.81
147_L	312_L	0.502	0.80
278_E	313_R	0.500	0.80
365_I	372_T	0.500	0.80
330_I	376_A	0.500	0.80

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3od1A	2	0.9693	100	0.188	Contact Map
3netA	2	0.9668	100	0.27	Contact Map
4g84A	2	0.977	100	0.273	Contact Map
4phcA	2	0.9923	100	0.274	Contact Map
3lc0A	2	0.9719	100	0.277	Contact Map
3racA	2	0.8107	100	0.286	Contact Map
1z7mA	4	0.8031	100	0.29	Contact Map
1wu7A	2	0.9693	100	0.29	Contact Map
1httA	2	0.821	100	0.331	Contact Map
1h4vB	2	0.9156	100	0.335	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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