YJFC - BACSU - GREMLIN Contacts

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YJFC - Uncharacterized protein YjfC

UniProt:	O34458	Sequences: MNLVMEKTFEQYEKLFSMEEQKREDVFRYTMMRPFEKMWTAIQVPLKAKEPNGYDVIMAAKMLGYLDVRDAESGQKALQILKESHVSETAESALRQCIFFAEREQLRVNAKEIKFGLYIADPNKLQLQKGYCGFGGIPGFIHVWINPNSYNLPRIPSIIAHEFHHNVRFSYIDFHHGSVSVGDYLVIEGLAESFARELFGTERLGPWVTRFDHEDLQYSIDVINEVLDVKGFSEVSRYMFGDPIANDQGFKPAGLSAFAGYAVGYHAVQSFMNQHHITISEATRLDAKTIISQCGLFST	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	299 (260)
Sequences:	321 (257)
Seq/√Len:	15.9

BACSU - YJFC YJAZ

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
85_H	88_E	4.482	1.00
183_D	287_A	3.267	0.99
193_S	269_Q	3.101	0.99
190_L	200_G	3.009	0.98
38_M	116_G	3.003	0.98
160_A	198_L	2.811	0.97
136_G	168_R	2.721	0.97
164_H	191_A	2.591	0.96
90_A	155_I	2.492	0.95
168_R	190_L	2.363	0.93
101_A	160_A	2.346	0.93
168_R	200_G	2.298	0.92
192_E	195_A	2.235	0.91
7_K	10_E	2.159	0.89
120_A	135_G	2.074	0.87
13_E	82_K	2.049	0.86
143_V	164_H	2.020	0.85
100_F	229_V	1.840	0.79
286_D	289_T	1.827	0.79
271_F	285_L	1.814	0.78
101_A	282_A	1.794	0.78
69_R	115_F	1.793	0.77
169_F	183_D	1.774	0.77
35_F	39_W	1.750	0.76
97_C	101_A	1.729	0.75
192_E	258_F	1.686	0.73
137_I	283_T	1.682	0.73
119_I	275_H	1.677	0.72
133_G	290_I	1.652	0.71
131_Y	223_I	1.616	0.70
181_V	229_V	1.611	0.69
161_H	189_G	1.587	0.68
165_H	189_G	1.587	0.68
162_E	241_G	1.587	0.68
165_H	241_G	1.587	0.68
241_G	261_Y	1.587	0.68
189_G	261_Y	1.587	0.68
162_E	261_Y	1.587	0.68
161_H	261_Y	1.587	0.68
165_H	261_Y	1.587	0.68
161_H	165_H	1.587	0.68
162_E	165_H	1.587	0.68
189_G	241_G	1.587	0.68
162_E	189_G	1.587	0.68
161_H	241_G	1.587	0.68
8_T	11_Q	1.577	0.68
72_E	103_R	1.555	0.66
86_V	117_L	1.515	0.64
8_T	157_S	1.511	0.64
260_G	268_V	1.500	0.64
239_M	260_G	1.499	0.64
155_I	185_L	1.498	0.63
160_A	199_F	1.494	0.63
192_E	265_Y	1.492	0.63
15_L	26_V	1.465	0.62
138_P	166_N	1.464	0.62
28_R	167_V	1.464	0.62
168_R	260_G	1.454	0.61
184_Y	235_V	1.439	0.60
279_I	283_T	1.436	0.60
183_D	187_I	1.431	0.60
117_L	144_W	1.416	0.59
157_S	239_M	1.414	0.59
91_E	99_F	1.413	0.59
147_P	279_I	1.397	0.58
5_M	118_Y	1.395	0.58
55_D	242_D	1.384	0.57
151_N	239_M	1.371	0.56
11_Q	239_M	1.361	0.56
61_K	67_D	1.344	0.55
185_L	266_H	1.337	0.54
36_E	40_T	1.336	0.54
34_P	227_L	1.325	0.54
135_G	174_F	1.313	0.53
218_Y	289_T	1.312	0.53
16_F	78_L	1.301	0.52
10_E	18_M	1.295	0.52
178_S	230_K	1.287	0.52
205_G	208_V	1.275	0.51
117_L	202_E	1.261	0.50
215_D	278_T	1.248	0.49
223_I	292_S	1.248	0.49
237_R	242_D	1.242	0.49
256_S	261_Y	1.240	0.49
162_E	256_S	1.240	0.49
241_G	256_S	1.240	0.49
189_G	256_S	1.240	0.49
165_H	256_S	1.240	0.49
161_H	256_S	1.240	0.49
32_M	59_A	1.220	0.48
164_H	240_F	1.214	0.47
196_R	270_S	1.211	0.47
14_K	148_N	1.204	0.47
12_Y	27_F	1.186	0.46
143_V	230_K	1.181	0.45
9_F	87_S	1.166	0.45
5_M	8_T	1.160	0.44
226_V	267_A	1.156	0.44
108_V	195_A	1.151	0.44
188_E	261_Y	1.147	0.44
165_H	188_E	1.147	0.44
188_E	241_G	1.147	0.44
161_H	188_E	1.147	0.44
162_E	188_E	1.147	0.44
285_L	289_T	1.143	0.43
166_N	259_A	1.141	0.43
56_V	164_H	1.138	0.43
13_E	33_R	1.127	0.42
226_V	288_K	1.120	0.42
228_D	288_K	1.113	0.42
86_V	143_V	1.110	0.41
190_L	260_G	1.108	0.41
76_K	149_S	1.104	0.41
25_D	256_S	1.104	0.41
101_A	164_H	1.102	0.41
119_I	140_F	1.099	0.41
267_A	294_C	1.099	0.41
35_F	59_A	1.094	0.41
202_E	263_V	1.092	0.40
169_F	187_I	1.087	0.40
14_K	79_Q	1.082	0.40
272_M	277_I	1.078	0.40
180_S	293_Q	1.077	0.40
134_F	163_F	1.057	0.38
223_I	226_V	1.056	0.38
218_Y	256_S	1.047	0.38
268_V	274_Q	1.045	0.38
136_G	200_G	1.043	0.38
54_Y	164_H	1.040	0.38
76_K	91_E	1.033	0.37
261_Y	264_G	1.031	0.37
161_H	264_G	1.031	0.37
241_G	264_G	1.031	0.37
162_E	264_G	1.031	0.37
165_H	264_G	1.031	0.37
189_G	264_G	1.031	0.37
168_R	195_A	1.025	0.37
98_I	199_F	1.020	0.36
121_D	133_G	1.019	0.36
271_F	277_I	1.016	0.36
172_I	183_D	1.011	0.36
228_D	292_S	1.010	0.36
79_Q	85_H	1.008	0.36
130_G	231_G	1.004	0.36
25_D	229_V	1.003	0.36
272_M	282_A	1.003	0.36
211_F	258_F	1.001	0.35
200_G	260_G	0.989	0.35
182_G	239_M	0.983	0.35
75_Q	103_R	0.982	0.34
161_H	191_A	0.981	0.34
162_E	191_A	0.981	0.34
191_A	241_G	0.981	0.34
191_A	261_Y	0.981	0.34
165_H	191_A	0.981	0.34
13_E	75_Q	0.981	0.34
156_P	160_A	0.977	0.34
187_I	207_W	0.975	0.34
54_Y	59_A	0.970	0.34
88_E	278_T	0.969	0.34
55_D	291_I	0.969	0.34
279_I	282_A	0.968	0.34
166_N	169_F	0.962	0.33
124_K	210_R	0.959	0.33
121_D	255_L	0.952	0.33
22_K	25_D	0.944	0.33
10_E	158_I	0.940	0.32
39_W	267_A	0.938	0.32
59_A	62_M	0.936	0.32
60_A	68_V	0.931	0.32
114_K	194_F	0.930	0.32
234_E	290_I	0.929	0.32
5_M	243_P	0.928	0.32
32_M	39_W	0.926	0.32
184_Y	240_F	0.919	0.31
19_E	175_H	0.914	0.31
148_N	223_I	0.911	0.31
100_F	149_S	0.911	0.31
199_F	227_L	0.910	0.31
75_Q	288_K	0.909	0.31
108_V	211_F	0.909	0.31
62_M	138_P	0.903	0.30
13_E	37_K	0.903	0.30
164_H	236_S	0.902	0.30
27_F	67_D	0.895	0.30
195_A	207_W	0.892	0.30
61_K	278_T	0.890	0.30
145_I	212_D	0.883	0.30
101_A	200_G	0.882	0.29
127_L	155_I	0.880	0.29
134_F	211_F	0.880	0.29
98_I	167_V	0.877	0.29
87_S	256_S	0.876	0.29
167_V	283_T	0.876	0.29
206_P	231_G	0.875	0.29
184_Y	239_M	0.871	0.29
88_E	289_T	0.860	0.28
143_V	155_I	0.859	0.28
270_S	294_C	0.854	0.28
39_W	200_G	0.853	0.28
118_Y	239_M	0.853	0.28
180_S	213_H	0.852	0.28
72_E	221_D	0.850	0.28
88_E	228_D	0.850	0.28
219_S	256_S	0.850	0.28
183_D	236_S	0.843	0.28
20_E	91_E	0.839	0.27
278_T	292_S	0.836	0.27
78_L	212_D	0.834	0.27
144_W	192_E	0.833	0.27
227_L	260_G	0.832	0.27
14_K	143_V	0.832	0.27
123_N	266_H	0.830	0.27
16_F	74_G	0.827	0.27
16_F	19_E	0.822	0.27
178_S	202_E	0.821	0.27
159_I	280_S	0.819	0.27
138_P	258_F	0.817	0.26
131_Y	138_P	0.817	0.26
73_S	78_L	0.813	0.26
150_Y	160_A	0.812	0.26
65_Y	156_P	0.811	0.26
282_A	290_I	0.808	0.26
39_W	59_A	0.802	0.26
69_R	112_E	0.801	0.26
164_H	243_P	0.801	0.26
107_R	271_F	0.800	0.26
228_D	289_T	0.798	0.26
186_V	225_E	0.795	0.25
167_V	194_F	0.793	0.25
22_K	26_V	0.792	0.25
120_A	147_P	0.791	0.25
135_G	166_N	0.788	0.25
187_I	238_Y	0.786	0.25
20_E	229_V	0.783	0.25
167_V	286_D	0.781	0.25
98_I	220_I	0.779	0.25
35_F	207_W	0.775	0.25
131_Y	216_L	0.772	0.24
138_P	254_G	0.770	0.24
269_Q	273_N	0.770	0.24
72_E	91_E	0.768	0.24
212_D	220_I	0.768	0.24
154_R	282_A	0.764	0.24
79_Q	109_N	0.763	0.24
8_T	260_G	0.762	0.24
17_S	75_Q	0.759	0.24
194_F	239_M	0.756	0.24
66_L	110_A	0.754	0.24
115_F	119_I	0.754	0.24
6_E	267_A	0.751	0.24
27_F	265_Y	0.750	0.24
269_Q	272_M	0.748	0.23
20_E	36_E	0.746	0.23
103_R	217_Q	0.742	0.23
179_V	231_G	0.737	0.23
133_G	242_D	0.735	0.23
240_F	265_Y	0.734	0.23
36_E	268_V	0.732	0.23
271_F	289_T	0.727	0.23
124_K	290_I	0.725	0.23
158_I	186_V	0.723	0.22
223_I	238_Y	0.722	0.22
90_A	164_H	0.720	0.22
19_E	23_R	0.717	0.22
25_D	40_T	0.716	0.22
23_R	115_F	0.714	0.22
87_S	190_L	0.713	0.22
168_R	192_E	0.710	0.22
79_Q	83_E	0.709	0.22
102_E	181_V	0.708	0.22
213_H	292_S	0.703	0.22
18_M	22_K	0.701	0.22
180_S	257_A	0.692	0.21
270_S	276_H	0.691	0.21
98_I	229_V	0.691	0.21
25_D	59_A	0.687	0.21
164_H	230_K	0.680	0.21
32_M	143_V	0.680	0.21
229_V	273_N	0.680	0.21
150_Y	155_I	0.679	0.21
20_E	26_V	0.674	0.21
7_K	30_T	0.674	0.21
148_N	186_V	0.672	0.20
127_L	196_R	0.672	0.20
67_D	211_F	0.668	0.20
102_E	268_V	0.666	0.20
139_G	166_N	0.665	0.20
8_T	168_R	0.664	0.20
17_S	31_M	0.662	0.20
18_M	26_V	0.661	0.20
114_K	195_A	0.660	0.20
166_N	174_F	0.656	0.20
273_N	284_R	0.654	0.20
190_L	205_G	0.652	0.20
108_V	194_F	0.652	0.20
97_C	156_P	0.649	0.20
205_G	283_T	0.649	0.20
224_N	292_S	0.644	0.19
116_G	181_V	0.643	0.19
135_G	236_S	0.641	0.19
115_F	164_H	0.638	0.19
54_Y	58_M	0.637	0.19
124_K	208_V	0.637	0.19
63_L	234_E	0.633	0.19
168_R	239_M	0.628	0.19
226_V	230_K	0.627	0.19
10_E	83_E	0.625	0.19
216_L	262_A	0.624	0.19
135_G	216_L	0.623	0.19
117_L	288_K	0.621	0.19
188_E	256_S	0.620	0.19
102_E	274_Q	0.617	0.18
186_V	264_G	0.616	0.18
268_V	290_I	0.616	0.18
76_K	103_R	0.614	0.18
139_G	194_F	0.610	0.18
136_G	239_M	0.609	0.18
32_M	166_N	0.609	0.18
145_I	278_T	0.607	0.18
163_F	184_Y	0.605	0.18
8_T	12_Y	0.605	0.18
242_D	254_G	0.605	0.18
260_G	265_Y	0.603	0.18
113_I	166_N	0.603	0.18
60_A	67_D	0.602	0.18
9_F	145_I	0.599	0.18
133_G	207_W	0.598	0.18
163_F	264_G	0.597	0.18
221_D	240_F	0.589	0.17
164_H	232_F	0.588	0.17
195_A	258_F	0.588	0.17
192_E	211_F	0.586	0.17
19_E	88_E	0.585	0.17
203_R	277_I	0.581	0.17
114_K	155_I	0.578	0.17
53_G	214_E	0.578	0.17
278_T	281_E	0.577	0.17
97_C	198_L	0.573	0.17
102_E	192_E	0.572	0.17
170_S	284_R	0.567	0.17
179_V	185_L	0.566	0.17
78_L	144_W	0.566	0.17
238_Y	255_L	0.564	0.17
113_I	220_I	0.564	0.17
81_L	113_I	0.561	0.17
102_E	109_N	0.560	0.17
170_S	200_G	0.560	0.17
15_L	18_M	0.555	0.16
83_E	230_K	0.552	0.16
195_A	200_G	0.550	0.16
112_E	171_Y	0.549	0.16
111_K	287_A	0.549	0.16
71_A	103_R	0.549	0.16
139_G	142_H	0.547	0.16
178_S	288_K	0.546	0.16
112_E	212_D	0.546	0.16
16_F	179_V	0.544	0.16
134_F	157_S	0.541	0.16
99_F	155_I	0.539	0.16
136_G	190_L	0.537	0.16
109_N	173_D	0.536	0.16
80_I	273_N	0.536	0.16
66_L	111_K	0.535	0.16
188_E	264_G	0.533	0.16
38_M	134_F	0.532	0.16
169_F	184_Y	0.529	0.16
40_T	267_A	0.528	0.16
192_E	240_F	0.526	0.15
147_P	254_G	0.526	0.15
176_H	198_L	0.525	0.15
85_H	289_T	0.525	0.15
160_A	176_H	0.523	0.15
221_D	267_A	0.519	0.15
88_E	186_V	0.519	0.15
31_M	40_T	0.519	0.15
177_G	256_S	0.518	0.15
196_R	201_T	0.515	0.15
72_E	75_Q	0.514	0.15
148_N	262_A	0.514	0.15
203_R	236_S	0.513	0.15
226_V	231_G	0.512	0.15
168_R	264_G	0.511	0.15
16_F	22_K	0.510	0.15
110_A	211_F	0.508	0.15
24_E	88_E	0.506	0.15
59_A	143_V	0.503	0.15
134_F	195_A	0.500	0.15
7_K	181_V	0.500	0.15
108_V	142_H	0.500	0.15

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4arfA	2	0.7191	94.7	0.933	Contact Map
4ar9A	1	0.7659	93.8	0.936	Contact Map
2y3uA	1	0.8361	93.5	0.936	Contact Map
4areA	1	0.8395	90.4	0.942	Contact Map
3cqbA	4	0.3512	83.4	0.948	Contact Map
4gaaA	2	0.8395	50.2	0.959	Contact Map
4kx7A	1	0.8528	45.1	0.96	Contact Map
3b34A	1	0.8562	43.8	0.961	Contact Map
4x2uA	1	0.8562	42	0.961	Contact Map
4qhpA	1	0.8562	38.9	0.962	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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