GREMLIN Database
YLBN - Uncharacterized protein YlbN
UniProt: O34445 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 172 (164)
Sequences: 1699 (1359)
Seq/√Len: 106.1

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
72_V142_D3.7851.00
19_D43_K3.5771.00
62_E77_P3.0481.00
19_D41_R2.9991.00
60_S79_E2.8571.00
21_T41_R2.7411.00
161_A164_K2.7391.00
136_A139_E2.6891.00
141_K146_I2.5851.00
164_K167_K2.5811.00
56_D83_K2.2641.00
38_S62_E2.2631.00
86_F112_I2.2261.00
68_S124_Q2.1251.00
21_T39_P2.0771.00
58_T81_S2.0731.00
57_F82_T2.0031.00
46_A53_V1.9621.00
58_T79_E1.9391.00
64_L73_D1.9261.00
74_V125_I1.9091.00
143_W146_I1.9081.00
68_S125_I1.8501.00
40_V61_G1.7871.00
127_C131_Q1.7251.00
70_T131_Q1.7101.00
146_I149_E1.6711.00
67_C127_C1.6701.00
70_T127_C1.6461.00
17_E45_R1.6231.00
66_P74_V1.6181.00
62_E75_P1.6001.00
131_Q134_G1.5481.00
155_V158_R1.5401.00
18_F44_G1.5261.00
72_V145_V1.5201.00
110_T114_K1.4971.00
135_A139_E1.4951.00
134_G139_E1.4881.00
139_E150_D1.4831.00
67_C70_T1.4761.00
84_E116_E1.4481.00
61_G78_F1.4231.00
59_I80_I1.4021.00
149_E152_K1.3831.00
44_G57_F1.3430.99
131_Q135_A1.3430.99
69_R126_F1.3360.99
66_P73_D1.3340.99
25_N36_R1.3290.99
139_E144_Q1.3230.99
102_V107_I1.3080.99
138_Q154_Q1.2960.99
15_S45_R1.2890.99
144_Q150_D1.2880.99
67_C131_Q1.2680.99
144_Q148_E1.2620.99
131_Q139_E1.2510.99
136_A144_Q1.2460.99
146_I150_D1.2450.99
26_E114_K1.2430.99
65_L76_Y1.2330.99
136_A150_D1.1940.99
54_S83_K1.1860.99
65_L74_V1.1740.99
38_S61_G1.1610.98
156_D159_L1.1410.98
64_L75_P1.1360.98
35_R64_L1.1220.98
139_E148_E1.1120.98
49_K52_Q1.1080.98
155_V159_L1.1000.98
143_W148_E1.0720.97
159_L165_L1.0590.97
16_F20_E1.0550.97
136_A148_E1.0450.97
55_F86_F1.0210.97
60_S77_P1.0170.97
127_C136_A1.0160.96
134_G137_P1.0110.96
63_M76_Y0.9940.96
163_E166_L0.9890.96
135_A140_G0.9750.96
92_D97_D0.9680.95
70_T136_A0.9500.95
35_R73_D0.9480.95
30_L114_K0.9380.95
5_I107_I0.9360.94
127_C134_G0.9260.94
59_I113_V0.9200.94
70_T139_E0.9110.94
41_R60_S0.9110.94
7_Q16_F0.9050.93
131_Q136_A0.9040.93
159_L166_L0.8990.93
18_F42_V0.8990.93
141_K149_E0.8960.93
24_L114_K0.8910.93
17_E44_G0.8900.93
67_C130_E0.8880.93
88_F102_V0.8880.93
47_D56_D0.8820.93
43_K58_T0.8800.92
127_C139_E0.8760.92
52_Q85_L0.8710.92
70_T134_G0.8670.92
61_G117_I0.8640.92
142_D145_V0.8590.92
80_I120_E0.8430.91
139_E143_W0.8400.91
160_A164_K0.8310.90
40_V123_M0.8230.90
32_S35_R0.8180.89
140_G143_W0.8170.89
20_E42_V0.8170.89
61_G77_P0.8120.89
161_A165_L0.8110.89
30_L33_D0.8050.89
17_E20_E0.7960.88
131_Q140_G0.7960.88
34_I117_I0.7940.88
45_R56_D0.7910.88
63_M78_F0.7870.88
159_L162_L0.7850.87
140_G144_Q0.7840.87
111_P115_E0.7840.87
8_L49_K0.7760.87
141_K147_S0.7750.87
96_D137_P0.7740.87
105_D109_I0.7690.86
104_D107_I0.7610.86
127_C135_A0.7560.85
26_E33_D0.7530.85
67_C137_P0.7520.85
136_A143_W0.7500.85
134_G150_D0.7490.85
17_E43_K0.7470.85
67_C136_A0.7450.85
151_K154_Q0.7430.84
51_K87_I0.7350.84
34_I37_I0.7270.83
135_A143_W0.7260.83
131_Q144_Q0.7200.82
23_E39_P0.7130.82
100_H111_P0.7100.82
146_I152_K0.7040.81
67_C134_G0.7030.81
142_D150_D0.7010.81
92_D96_D0.6970.80
100_H112_I0.6910.80
71_L122_P0.6840.79
46_A55_F0.6820.79
49_K54_S0.6820.79
159_L163_E0.6790.79
51_K89_H0.6750.78
55_F111_P0.6730.78
103_E113_V0.6690.78
135_A144_Q0.6690.78
155_V163_E0.6670.77
38_S64_L0.6660.77
13_K48_I0.6660.77
128_E144_Q0.6640.77
80_I116_E0.6600.77
87_I101_I0.6570.76
89_H104_D0.6540.76
94_I97_D0.6530.76
4_T7_Q0.6530.76
87_I99_V0.6440.75
128_E131_Q0.6430.75
40_V162_L0.6420.75
19_D60_S0.6380.74
126_F131_Q0.6380.74
6_Y163_E0.6360.74
59_I82_T0.6350.74
160_A163_E0.6350.74
119_L154_Q0.6330.74
91_T128_E0.6280.73
35_R65_L0.6270.73
147_S152_K0.6260.73
93_D101_I0.6260.73
131_Q150_D0.6240.73
8_L46_A0.6200.72
162_L165_L0.6190.72
138_Q141_K0.6170.72
67_C135_A0.6110.71
71_L117_I0.6100.71
150_D154_Q0.6100.71
70_T135_A0.6050.70
142_D148_E0.6040.70
9_H48_I0.6030.70
32_S65_L0.5980.69
27_L114_K0.5950.69
68_S126_F0.5930.69
14_Q90_H0.5920.69
50_S102_V0.5910.69
18_F74_V0.5880.68
70_T126_F0.5850.68
42_V113_V0.5830.67
147_S151_K0.5810.67
124_Q163_E0.5770.67
51_K153_N0.5730.66
135_A150_D0.5720.66
42_V61_G0.5710.66
24_L110_T0.5670.65
55_F119_L0.5650.65
146_I151_K0.5640.65
13_K113_V0.5630.65
34_I165_L0.5600.64
93_D96_D0.5590.64
12_P15_S0.5580.64
130_E140_G0.5560.64
65_L125_I0.5550.64
6_Y9_H0.5550.64
127_C137_P0.5540.64
6_Y105_D0.5510.63
67_C139_E0.5480.63
155_V161_A0.5460.62
95_E117_I0.5430.62
131_Q148_E0.5430.62
124_Q155_V0.5410.62
5_I106_T0.5400.62
84_E166_L0.5370.61
18_F46_A0.5360.61
37_I114_K0.5350.61
86_F107_I0.5280.60
81_S95_E0.5270.60
86_F116_E0.5260.60
45_R54_S0.5260.60
142_D146_I0.5240.59
91_T95_E0.5200.59
24_L37_I0.5180.58
107_I129_S0.5170.58
23_E114_K0.5170.58
72_V93_D0.5170.58
55_F125_I0.5150.58
59_I76_Y0.5130.58
47_D50_S0.5120.58
111_P114_K0.5110.57
91_T94_I0.5080.57
3_W18_F0.5070.57
106_T117_I0.5020.56
34_I40_V0.5010.56
101_I107_I0.5010.56
34_I63_M0.5010.56
64_L74_V0.5000.56
30_L44_G0.5000.56
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2fe3A 2 0.6686 9.8 0.946 Contact Map
2o03A 2 0.6395 6.2 0.951 Contact Map
3mwmA 2 0.6512 6.2 0.951 Contact Map
1l8dA 2 0.4942 4.9 0.953 Contact Map
3eyyA 2 0.6163 4.2 0.955 Contact Map
2xigA 4 0.6628 3.9 0.956 Contact Map
3zyzA 1 0.3605 3.8 0.956 Contact Map
1k5jA 3 0.2616 3.7 0.956 Contact Map
4etsA 2 0.6686 3.6 0.956 Contact Map
4d0jA 4 0.3663 3.6 0.956 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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