GREMLIN Database
YDJG - Uncharacterized protein YdjG
UniProt: O34434 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 341 (329)
Sequences: 840 (705)
Seq/√Len: 38.9

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
102_S105_E6.0861.00
163_E168_C4.3201.00
135_G222_Y4.0501.00
100_T210_E4.0441.00
16_F21_G3.9101.00
159_H170_E3.8201.00
161_Y168_C3.4231.00
71_A224_A3.2301.00
154_N261_N3.1681.00
15_A26_S3.0881.00
161_Y170_E2.8941.00
160_Q167_I2.7631.00
162_E167_I2.7481.00
163_E166_Y2.7181.00
190_D197_D2.6841.00
154_N263_R2.6721.00
55_Q62_V2.6141.00
97_I300_Q2.6031.00
145_L242_I2.5801.00
108_Q112_K2.5771.00
160_Q169_T2.5551.00
18_S222_Y2.5021.00
318_W322_I2.4231.00
157_R174_F2.3541.00
105_E109_A2.3201.00
150_Q179_D2.2491.00
230_T233_E2.2000.99
53_E62_V2.1860.99
7_C10_C2.1780.99
14_M32_D2.1260.99
158_V258_T2.1190.99
187_I242_I2.1170.99
149_V246_I2.1160.99
326_T330_L2.0770.99
193_E233_E2.0690.99
156_T173_H2.0570.99
310_I315_V1.9800.99
328_L332_L1.9460.99
158_V169_T1.8970.98
109_A112_K1.8600.98
159_H172_E1.8500.98
190_D200_M1.8470.98
24_S31_Q1.8160.98
147_S269_T1.8080.98
287_D290_R1.7810.97
149_V267_I1.7640.97
204_E241_K1.7560.97
313_G317_A1.7430.97
142_M277_V1.7360.97
12_S27_S1.6920.96
158_V171_T1.6850.96
317_A321_G1.6810.96
182_L249_Y1.6650.96
105_E108_Q1.6650.96
103_K107_E1.6620.96
58_N79_G1.6550.96
298_N301_T1.6540.96
316_A320_S1.6510.96
9_N30_R1.6290.95
207_S300_Q1.6170.95
312_R316_A1.6040.95
189_V238_A1.5950.95
151_V250_I1.5670.94
155_C260_V1.5580.94
118_L311_S1.5550.94
156_T171_T1.5490.94
22_S33_N1.5460.94
15_A24_S1.5160.93
143_F234_L1.4880.93
324_G328_L1.4650.92
207_S210_E1.4630.92
247_D265_K1.4590.92
82_I220_A1.4500.92
149_V265_K1.4500.92
155_C254_F1.4470.92
152_R264_D1.4090.91
143_F238_A1.4070.90
317_A324_G1.3870.90
140_F200_M1.3800.90
144_D275_F1.3790.90
319_F323_A1.3780.90
117_G120_T1.3750.89
22_S31_Q1.3740.89
297_M304_V1.3630.89
17_D24_S1.3620.89
317_A320_S1.3590.89
25_C28_C1.3500.89
117_G308_P1.3320.88
69_T72_T1.3140.87
168_C172_E1.3130.87
142_M188_P1.3100.87
122_R314_K1.3050.87
287_D292_E1.3020.87
141_W227_Y1.2980.86
225_E228_N1.2910.86
33_N36_S1.2900.86
154_N173_H1.2860.86
247_D251_H1.2840.86
106_A300_Q1.2830.86
219_L278_L1.2730.85
185_L273_N1.2640.85
109_A297_M1.2640.85
17_D20_T1.2490.84
227_Y276_Y1.2400.84
162_E166_Y1.2340.84
65_T69_T1.2320.83
41_N44_A1.2300.83
17_D21_G1.2200.83
43_A47_S1.2070.82
189_V234_L1.2060.82
201_D237_R1.2020.82
244_S247_D1.2010.82
186_K208_Y1.1980.82
74_C77_C1.1960.82
73_T132_S1.1900.81
56_C59_C1.1880.81
137_Y298_N1.1870.81
320_S324_G1.1860.81
158_V167_I1.1750.80
138_I200_M1.1730.80
104_Q152_R1.1710.80
146_N183_D1.1710.80
110_F295_F1.1600.80
147_S267_I1.1560.79
61_A75_S1.1480.79
208_Y211_L1.1480.79
329_A332_L1.1440.79
197_D237_R1.1380.78
73_T223_I1.1350.78
180_I253_T1.1340.78
205_P298_N1.1230.77
148_E179_D1.1200.77
282_W301_T1.1150.77
120_T308_P1.1070.76
250_I265_K1.1030.76
174_F297_M1.0970.76
211_L277_V1.0910.75
154_N172_E1.0900.75
153_A225_E1.0840.75
299_G302_G1.0810.75
9_N32_D1.0810.75
12_S30_R1.0770.74
183_D252_S1.0720.74
114_C120_T1.0690.74
23_L34_I1.0530.73
78_G81_A1.0500.72
143_F282_W1.0490.72
240_E332_L1.0490.72
153_A262_V1.0380.71
104_Q108_Q1.0340.71
159_H168_C1.0310.71
41_N46_F1.0310.71
101_I105_E1.0280.71
142_M185_L1.0270.71
191_A201_D1.0200.70
40_E50_E1.0180.70
101_I129_R1.0170.70
188_P204_E1.0110.69
285_S292_E1.0080.69
23_L75_S1.0060.69
229_Y234_L1.0010.69
182_L246_I0.9970.68
212_K215_Q0.9930.68
177_F327_F0.9890.68
148_E181_N0.9860.67
124_F286_Y0.9810.67
153_A263_R0.9810.67
95_K213_D0.9770.67
42_I46_F0.9750.67
298_N302_G0.9720.66
58_N201_D0.9710.66
169_T258_T0.9700.66
255_S262_V0.9680.66
235_F239_K0.9670.66
206_Y262_V0.9660.66
68_E228_N0.9650.66
70_T87_L0.9560.65
227_Y288_Y0.9490.64
188_P200_M0.9480.64
147_S246_I0.9470.64
61_A66_E0.9470.64
138_I195_M0.9420.64
14_M80_A0.9370.63
124_F306_G0.9350.63
163_E167_I0.9260.63
147_S242_I0.9200.62
110_F114_C0.9190.62
119_L318_W0.9150.62
63_L81_A0.9110.61
14_M110_F0.9100.61
76_F203_L0.9100.61
99_F298_N0.9060.61
161_Y166_Y0.9060.61
162_E168_C0.9040.61
45_R48_D0.9030.61
142_M275_F0.9000.60
192_S195_M0.8990.60
163_E170_E0.8990.60
119_L315_V0.8980.60
13_D26_S0.8960.60
165_D328_L0.8880.59
120_T153_A0.8880.59
155_C257_Y0.8810.59
293_H306_G0.8770.58
113_W311_S0.8770.58
75_S78_G0.8720.58
255_S260_V0.8690.58
93_P139_P0.8660.57
289_E330_L0.8640.57
17_D31_Q0.8580.57
7_C11_G0.8560.56
99_F135_G0.8460.56
190_D241_K0.8450.55
14_M228_N0.8410.55
61_A83_L0.8390.55
119_L187_I0.8380.55
250_I262_V0.8290.54
95_K277_V0.8260.54
38_P213_D0.8240.54
153_A286_Y0.8110.52
188_P208_Y0.8100.52
208_Y279_L0.8100.52
180_I308_P0.8090.52
155_C256_G0.8090.52
306_G309_P0.8030.52
41_N45_R0.7930.51
96_V224_A0.7920.51
162_E165_D0.7890.50
328_L333_V0.7830.50
120_T124_F0.7800.50
7_C28_C0.7790.49
10_C28_C0.7790.49
73_T78_G0.7790.49
110_F284_V0.7780.49
41_N328_L0.7750.49
254_F260_V0.7740.49
231_D274_S0.7740.49
57_K79_G0.7720.49
102_S215_Q0.7690.49
20_T24_S0.7680.49
59_C280_P0.7670.48
29_G78_G0.7650.48
203_L304_V0.7620.48
204_E237_R0.7620.48
82_I93_P0.7610.48
142_M211_L0.7610.48
69_T86_R0.7600.48
56_C280_P0.7590.48
262_V265_K0.7580.48
155_C255_S0.7570.48
331_K334_S0.7560.47
65_T225_E0.7560.47
75_S286_Y0.7550.47
88_S226_K0.7540.47
113_W153_A0.7540.47
159_H257_Y0.7520.47
71_A80_A0.7500.47
190_D204_E0.7480.47
23_L60_G0.7470.47
214_F221_G0.7470.47
203_L305_V0.7470.47
225_E283_M0.7440.46
15_A220_A0.7430.46
142_M273_N0.7410.46
123_G288_Y0.7400.46
138_I295_F0.7400.46
138_I192_S0.7370.46
228_N241_K0.7370.46
14_M21_G0.7360.46
198_E202_K0.7360.46
23_L125_M0.7240.45
232_E235_F0.7240.45
122_R313_G0.7240.45
165_D169_T0.7210.44
40_E44_A0.7200.44
54_Y81_A0.7190.44
10_C25_C0.7190.44
7_C25_C0.7190.44
160_Q165_D0.7150.44
79_G83_L0.7130.44
102_S323_A0.7100.43
167_I177_F0.7080.43
181_N329_A0.7070.43
103_K219_L0.7060.43
200_M208_Y0.7050.43
223_I283_M0.7040.43
43_A46_F0.7020.43
12_S26_S0.7020.43
68_E286_Y0.7010.43
62_V79_G0.6980.42
49_D326_T0.6960.42
61_A64_I0.6950.42
91_L231_D0.6950.42
233_E303_K0.6930.42
243_S247_D0.6910.42
107_E281_V0.6860.41
178_R257_Y0.6830.41
200_M204_E0.6810.41
95_K211_L0.6800.41
12_S288_Y0.6770.40
135_G298_N0.6770.40
313_G316_A0.6760.40
184_Y275_F0.6750.40
28_C56_C0.6730.40
147_S272_V0.6710.40
155_C176_A0.6710.40
190_D283_M0.6680.40
164_G167_I0.6680.40
63_L171_T0.6670.40
57_K84_A0.6660.39
322_I326_T0.6650.39
157_R258_T0.6630.39
44_A47_S0.6630.39
91_L276_Y0.6610.39
140_F227_Y0.6560.39
77_C299_G0.6540.38
11_G135_G0.6520.38
164_G169_T0.6520.38
39_K112_K0.6490.38
319_F322_I0.6490.38
8_P296_A0.6460.38
110_F286_Y0.6460.38
210_E247_D0.6450.38
142_M186_K0.6450.38
156_T178_R0.6430.37
19_E102_S0.6430.37
200_M283_M0.6430.37
113_W308_P0.6430.37
167_I258_T0.6410.37
38_P215_Q0.6390.37
41_N47_S0.6380.37
93_P99_F0.6340.37
178_R253_T0.6340.37
93_P141_W0.6340.37
93_P298_N0.6330.37
189_V192_S0.6310.36
61_A225_E0.6280.36
204_E228_N0.6270.36
206_Y273_N0.6250.36
208_Y229_Y0.6250.36
138_I204_E0.6250.36
25_C56_C0.6230.36
208_Y275_F0.6220.36
71_A121_P0.6220.36
234_L286_Y0.6220.36
71_A276_Y0.6220.36
220_A312_R0.6210.36
85_D282_W0.6210.36
141_W300_Q0.6200.36
154_N243_S0.6200.36
20_T34_I0.6200.36
138_I190_D0.6190.35
318_W321_G0.6180.35
244_S330_L0.6180.35
145_L196_K0.6150.35
181_N233_E0.6140.35
117_G124_F0.6120.35
130_I284_V0.6100.35
120_T180_I0.6100.35
135_G299_G0.6090.35
29_G144_D0.6080.35
321_G325_G0.6080.35
136_M225_E0.6070.34
105_E112_K0.6070.34
146_N332_L0.6070.34
263_R326_T0.6070.34
285_S294_I0.6060.34
118_L315_V0.6060.34
164_G179_D0.6060.34
139_P280_P0.6050.34
329_A333_V0.6040.34
77_C280_P0.6020.34
319_F327_F0.6020.34
325_G329_A0.6000.34
299_G303_K0.6000.34
150_Q177_F0.5990.34
289_E316_A0.5970.34
143_F229_Y0.5970.34
145_L269_T0.5960.34
155_C206_Y0.5950.34
78_G129_R0.5940.33
119_L304_V0.5930.33
32_D228_N0.5900.33
148_E326_T0.5880.33
192_S200_M0.5880.33
27_S171_T0.5860.33
21_G32_D0.5840.33
141_W191_A0.5840.33
123_G127_A0.5820.32
117_G306_G0.5820.32
207_S295_F0.5810.32
134_T283_M0.5810.32
12_S170_E0.5800.32
116_K250_I0.5780.32
87_L269_T0.5760.32
124_F161_Y0.5760.32
82_I221_G0.5750.32
268_H278_L0.5740.32
180_I250_I0.5720.32
203_L303_K0.5720.32
201_D279_L0.5720.32
241_K245_Y0.5710.32
84_A110_F0.5710.32
19_E177_F0.5700.32
126_S222_Y0.5690.31
141_W276_Y0.5690.31
61_A279_L0.5680.31
74_C299_G0.5660.31
60_G77_C0.5660.31
185_L304_V0.5640.31
97_I210_E0.5630.31
112_K325_G0.5630.31
118_L310_I0.5630.31
59_C77_C0.5600.31
59_C139_P0.5600.31
280_P299_G0.5600.31
159_H256_G0.5580.31
50_E277_V0.5580.31
113_W288_Y0.5570.31
48_D320_S0.5550.30
199_L305_V0.5550.30
281_V286_Y0.5550.30
66_E69_T0.5540.30
184_Y246_I0.5520.30
234_L238_A0.5520.30
28_C59_C0.5520.30
56_C77_C0.5520.30
65_T76_F0.5520.30
52_K84_A0.5510.30
214_F219_L0.5510.30
138_I189_V0.5510.30
33_N320_S0.5480.30
327_F331_K0.5460.30
56_C139_P0.5450.30
142_M208_Y0.5450.30
183_D236_P0.5450.30
236_P268_H0.5430.29
113_W118_L0.5420.29
246_I267_I0.5410.29
23_L37_L0.5400.29
19_E263_R0.5390.29
17_D270_K0.5390.29
6_K194_K0.5380.29
27_S67_A0.5380.29
207_S258_T0.5370.29
261_N329_A0.5370.29
78_G299_G0.5360.29
93_P137_Y0.5350.29
284_V297_M0.5330.29
314_K317_A0.5330.29
137_Y302_G0.5330.29
75_S81_A0.5320.29
197_D200_M0.5320.29
311_S317_A0.5300.28
195_M200_M0.5300.28
42_I45_R0.5300.28
153_A260_V0.5290.28
218_Y222_Y0.5280.28
80_A225_E0.5280.28
207_S326_T0.5270.28
54_Y73_T0.5260.28
42_I233_E0.5250.28
90_H283_M0.5240.28
73_T199_L0.5230.28
151_V178_R0.5220.28
23_L220_A0.5220.28
316_A321_G0.5210.28
243_S267_I0.5210.28
315_V319_F0.5190.28
235_F272_V0.5180.28
124_F296_A0.5180.28
84_A285_S0.5180.28
28_C98_P0.5170.28
196_K293_H0.5160.27
74_C280_P0.5160.27
200_M223_I0.5150.27
72_T138_I0.5130.27
25_C99_F0.5130.27
14_M217_A0.5130.27
154_N175_E0.5130.27
94_A127_A0.5130.27
247_D262_V0.5120.27
50_E87_L0.5120.27
110_F129_R0.5120.27
7_C56_C0.5110.27
10_C56_C0.5110.27
204_E227_Y0.5090.27
26_S29_G0.5080.27
143_F231_D0.5040.27
173_H178_R0.5030.27
25_C59_C0.5030.27
117_G180_I0.5030.27
16_F100_T0.5010.26
268_H271_N0.5000.26
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
1vq8Z 1 0.1466 98.1 0.91 Contact Map
1pftA 1 0.1408 98 0.911 Contact Map
3h0gL 1 0.132 97.9 0.913 Contact Map
1dl6A 1 0.1466 97.7 0.917 Contact Map
1vd4A 1 0.132 97.3 0.923 Contact Map
4cgyA 1 0 97 0.927 Contact Map
4qiwP 1 0.1202 96.2 0.933 Contact Map
3h0gI 1 0.2405 95.9 0.935 Contact Map
1twfI 1 0.2727 95.8 0.935 Contact Map
3qt1I 1 0.1232 95.6 0.936 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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