YDJG - BACSU - GREMLIN Contacts

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YDJG - Uncharacterized protein YdjG

UniProt:	O34434	Sequences: MIISYKCPNCGSDMAFDSETGSLSCSSCGRQDNIESLPKENIAARFSDDEAKEYQCKNCGAVLITEAETTATTCSFCGGAAILADRLSGHLAPAKVIPFTISKQEAEQAFRKWCKKGLLTPRGFMSADRIKSITGMYIPFWMFDLNSEVQVRANCTRVHQYEEGDYICTETEHFEAFRDINLDYLKIPVDASEKMKDELMDKLEPYSYEELKDFQTAYLAGYIAEKYNYTDEELFPRAKEKISSYIDSYIHSTFSGYTSVNVRDKHIHTKNVNSFYVLLPVWMVSYDYERAEHIFAMNGQTGKVVGKPPISRGKVAAWFSGIAGGTFLALKLVSLMMGGGF	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	341 (329)
Sequences:	840 (705)
Seq/√Len:	38.9

BACSU - YDJG

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
102_S	105_E	6.086	1.00
163_E	168_C	4.320	1.00
135_G	222_Y	4.050	1.00
100_T	210_E	4.044	1.00
16_F	21_G	3.910	1.00
159_H	170_E	3.820	1.00
161_Y	168_C	3.423	1.00
71_A	224_A	3.230	1.00
154_N	261_N	3.168	1.00
15_A	26_S	3.088	1.00
161_Y	170_E	2.894	1.00
160_Q	167_I	2.763	1.00
162_E	167_I	2.748	1.00
163_E	166_Y	2.718	1.00
190_D	197_D	2.684	1.00
154_N	263_R	2.672	1.00
55_Q	62_V	2.614	1.00
97_I	300_Q	2.603	1.00
145_L	242_I	2.580	1.00
108_Q	112_K	2.577	1.00
160_Q	169_T	2.555	1.00
18_S	222_Y	2.502	1.00
318_W	322_I	2.423	1.00
157_R	174_F	2.354	1.00
105_E	109_A	2.320	1.00
150_Q	179_D	2.249	1.00
230_T	233_E	2.200	0.99
53_E	62_V	2.186	0.99
7_C	10_C	2.178	0.99
14_M	32_D	2.126	0.99
158_V	258_T	2.119	0.99
187_I	242_I	2.117	0.99
149_V	246_I	2.116	0.99
326_T	330_L	2.077	0.99
193_E	233_E	2.069	0.99
156_T	173_H	2.057	0.99
310_I	315_V	1.980	0.99
328_L	332_L	1.946	0.99
158_V	169_T	1.897	0.98
109_A	112_K	1.860	0.98
159_H	172_E	1.850	0.98
190_D	200_M	1.847	0.98
24_S	31_Q	1.816	0.98
147_S	269_T	1.808	0.98
287_D	290_R	1.781	0.97
149_V	267_I	1.764	0.97
204_E	241_K	1.756	0.97
313_G	317_A	1.743	0.97
142_M	277_V	1.736	0.97
12_S	27_S	1.692	0.96
158_V	171_T	1.685	0.96
317_A	321_G	1.681	0.96
182_L	249_Y	1.665	0.96
105_E	108_Q	1.665	0.96
103_K	107_E	1.662	0.96
58_N	79_G	1.655	0.96
298_N	301_T	1.654	0.96
316_A	320_S	1.651	0.96
9_N	30_R	1.629	0.95
207_S	300_Q	1.617	0.95
312_R	316_A	1.604	0.95
189_V	238_A	1.595	0.95
151_V	250_I	1.567	0.94
155_C	260_V	1.558	0.94
118_L	311_S	1.555	0.94
156_T	171_T	1.549	0.94
22_S	33_N	1.546	0.94
15_A	24_S	1.516	0.93
143_F	234_L	1.488	0.93
324_G	328_L	1.465	0.92
207_S	210_E	1.463	0.92
247_D	265_K	1.459	0.92
82_I	220_A	1.450	0.92
149_V	265_K	1.450	0.92
155_C	254_F	1.447	0.92
152_R	264_D	1.409	0.91
143_F	238_A	1.407	0.90
317_A	324_G	1.387	0.90
140_F	200_M	1.380	0.90
144_D	275_F	1.379	0.90
319_F	323_A	1.378	0.90
117_G	120_T	1.375	0.89
22_S	31_Q	1.374	0.89
297_M	304_V	1.363	0.89
17_D	24_S	1.362	0.89
317_A	320_S	1.359	0.89
25_C	28_C	1.350	0.89
117_G	308_P	1.332	0.88
69_T	72_T	1.314	0.87
168_C	172_E	1.313	0.87
142_M	188_P	1.310	0.87
122_R	314_K	1.305	0.87
287_D	292_E	1.302	0.87
141_W	227_Y	1.298	0.86
225_E	228_N	1.291	0.86
33_N	36_S	1.290	0.86
154_N	173_H	1.286	0.86
247_D	251_H	1.284	0.86
106_A	300_Q	1.283	0.86
219_L	278_L	1.273	0.85
185_L	273_N	1.264	0.85
109_A	297_M	1.264	0.85
17_D	20_T	1.249	0.84
227_Y	276_Y	1.240	0.84
162_E	166_Y	1.234	0.84
65_T	69_T	1.232	0.83
41_N	44_A	1.230	0.83
17_D	21_G	1.220	0.83
43_A	47_S	1.207	0.82
189_V	234_L	1.206	0.82
201_D	237_R	1.202	0.82
244_S	247_D	1.201	0.82
186_K	208_Y	1.198	0.82
74_C	77_C	1.196	0.82
73_T	132_S	1.190	0.81
56_C	59_C	1.188	0.81
137_Y	298_N	1.187	0.81
320_S	324_G	1.186	0.81
158_V	167_I	1.175	0.80
138_I	200_M	1.173	0.80
104_Q	152_R	1.171	0.80
146_N	183_D	1.171	0.80
110_F	295_F	1.160	0.80
147_S	267_I	1.156	0.79
61_A	75_S	1.148	0.79
208_Y	211_L	1.148	0.79
329_A	332_L	1.144	0.79
197_D	237_R	1.138	0.78
73_T	223_I	1.135	0.78
180_I	253_T	1.134	0.78
205_P	298_N	1.123	0.77
148_E	179_D	1.120	0.77
282_W	301_T	1.115	0.77
120_T	308_P	1.107	0.76
250_I	265_K	1.103	0.76
174_F	297_M	1.097	0.76
211_L	277_V	1.091	0.75
154_N	172_E	1.090	0.75
153_A	225_E	1.084	0.75
299_G	302_G	1.081	0.75
9_N	32_D	1.081	0.75
12_S	30_R	1.077	0.74
183_D	252_S	1.072	0.74
114_C	120_T	1.069	0.74
23_L	34_I	1.053	0.73
78_G	81_A	1.050	0.72
143_F	282_W	1.049	0.72
240_E	332_L	1.049	0.72
153_A	262_V	1.038	0.71
104_Q	108_Q	1.034	0.71
159_H	168_C	1.031	0.71
41_N	46_F	1.031	0.71
101_I	105_E	1.028	0.71
142_M	185_L	1.027	0.71
191_A	201_D	1.020	0.70
40_E	50_E	1.018	0.70
101_I	129_R	1.017	0.70
188_P	204_E	1.011	0.69
285_S	292_E	1.008	0.69
23_L	75_S	1.006	0.69
229_Y	234_L	1.001	0.69
182_L	246_I	0.997	0.68
212_K	215_Q	0.993	0.68
177_F	327_F	0.989	0.68
148_E	181_N	0.986	0.67
124_F	286_Y	0.981	0.67
153_A	263_R	0.981	0.67
95_K	213_D	0.977	0.67
42_I	46_F	0.975	0.67
298_N	302_G	0.972	0.66
58_N	201_D	0.971	0.66
169_T	258_T	0.970	0.66
255_S	262_V	0.968	0.66
235_F	239_K	0.967	0.66
206_Y	262_V	0.966	0.66
68_E	228_N	0.965	0.66
70_T	87_L	0.956	0.65
227_Y	288_Y	0.949	0.64
188_P	200_M	0.948	0.64
147_S	246_I	0.947	0.64
61_A	66_E	0.947	0.64
138_I	195_M	0.942	0.64
14_M	80_A	0.937	0.63
124_F	306_G	0.935	0.63
163_E	167_I	0.926	0.63
147_S	242_I	0.920	0.62
110_F	114_C	0.919	0.62
119_L	318_W	0.915	0.62
63_L	81_A	0.911	0.61
14_M	110_F	0.910	0.61
76_F	203_L	0.910	0.61
99_F	298_N	0.906	0.61
161_Y	166_Y	0.906	0.61
162_E	168_C	0.904	0.61
45_R	48_D	0.903	0.61
142_M	275_F	0.900	0.60
192_S	195_M	0.899	0.60
163_E	170_E	0.899	0.60
119_L	315_V	0.898	0.60
13_D	26_S	0.896	0.60
165_D	328_L	0.888	0.59
120_T	153_A	0.888	0.59
155_C	257_Y	0.881	0.59
293_H	306_G	0.877	0.58
113_W	311_S	0.877	0.58
75_S	78_G	0.872	0.58
255_S	260_V	0.869	0.58
93_P	139_P	0.866	0.57
289_E	330_L	0.864	0.57
17_D	31_Q	0.858	0.57
7_C	11_G	0.856	0.56
99_F	135_G	0.846	0.56
190_D	241_K	0.845	0.55
14_M	228_N	0.841	0.55
61_A	83_L	0.839	0.55
119_L	187_I	0.838	0.55
250_I	262_V	0.829	0.54
95_K	277_V	0.826	0.54
38_P	213_D	0.824	0.54
153_A	286_Y	0.811	0.52
188_P	208_Y	0.810	0.52
208_Y	279_L	0.810	0.52
180_I	308_P	0.809	0.52
155_C	256_G	0.809	0.52
306_G	309_P	0.803	0.52
41_N	45_R	0.793	0.51
96_V	224_A	0.792	0.51
162_E	165_D	0.789	0.50
328_L	333_V	0.783	0.50
120_T	124_F	0.780	0.50
7_C	28_C	0.779	0.49
10_C	28_C	0.779	0.49
73_T	78_G	0.779	0.49
110_F	284_V	0.778	0.49
41_N	328_L	0.775	0.49
254_F	260_V	0.774	0.49
231_D	274_S	0.774	0.49
57_K	79_G	0.772	0.49
102_S	215_Q	0.769	0.49
20_T	24_S	0.768	0.49
59_C	280_P	0.767	0.48
29_G	78_G	0.765	0.48
203_L	304_V	0.762	0.48
204_E	237_R	0.762	0.48
82_I	93_P	0.761	0.48
142_M	211_L	0.761	0.48
69_T	86_R	0.760	0.48
56_C	280_P	0.759	0.48
262_V	265_K	0.758	0.48
155_C	255_S	0.757	0.48
331_K	334_S	0.756	0.47
65_T	225_E	0.756	0.47
75_S	286_Y	0.755	0.47
88_S	226_K	0.754	0.47
113_W	153_A	0.754	0.47
159_H	257_Y	0.752	0.47
71_A	80_A	0.750	0.47
190_D	204_E	0.748	0.47
23_L	60_G	0.747	0.47
214_F	221_G	0.747	0.47
203_L	305_V	0.747	0.47
225_E	283_M	0.744	0.46
15_A	220_A	0.743	0.46
142_M	273_N	0.741	0.46
123_G	288_Y	0.740	0.46
138_I	295_F	0.740	0.46
138_I	192_S	0.737	0.46
228_N	241_K	0.737	0.46
14_M	21_G	0.736	0.46
198_E	202_K	0.736	0.46
23_L	125_M	0.724	0.45
232_E	235_F	0.724	0.45
122_R	313_G	0.724	0.45
165_D	169_T	0.721	0.44
40_E	44_A	0.720	0.44
54_Y	81_A	0.719	0.44
10_C	25_C	0.719	0.44
7_C	25_C	0.719	0.44
160_Q	165_D	0.715	0.44
79_G	83_L	0.713	0.44
102_S	323_A	0.710	0.43
167_I	177_F	0.708	0.43
181_N	329_A	0.707	0.43
103_K	219_L	0.706	0.43
200_M	208_Y	0.705	0.43
223_I	283_M	0.704	0.43
43_A	46_F	0.702	0.43
12_S	26_S	0.702	0.43
68_E	286_Y	0.701	0.43
62_V	79_G	0.698	0.42
49_D	326_T	0.696	0.42
61_A	64_I	0.695	0.42
91_L	231_D	0.695	0.42
233_E	303_K	0.693	0.42
243_S	247_D	0.691	0.42
107_E	281_V	0.686	0.41
178_R	257_Y	0.683	0.41
200_M	204_E	0.681	0.41
95_K	211_L	0.680	0.41
12_S	288_Y	0.677	0.40
135_G	298_N	0.677	0.40
313_G	316_A	0.676	0.40
184_Y	275_F	0.675	0.40
28_C	56_C	0.673	0.40
147_S	272_V	0.671	0.40
155_C	176_A	0.671	0.40
190_D	283_M	0.668	0.40
164_G	167_I	0.668	0.40
63_L	171_T	0.667	0.40
57_K	84_A	0.666	0.39
322_I	326_T	0.665	0.39
157_R	258_T	0.663	0.39
44_A	47_S	0.663	0.39
91_L	276_Y	0.661	0.39
140_F	227_Y	0.656	0.39
77_C	299_G	0.654	0.38
11_G	135_G	0.652	0.38
164_G	169_T	0.652	0.38
39_K	112_K	0.649	0.38
319_F	322_I	0.649	0.38
8_P	296_A	0.646	0.38
110_F	286_Y	0.646	0.38
210_E	247_D	0.645	0.38
142_M	186_K	0.645	0.38
156_T	178_R	0.643	0.37
19_E	102_S	0.643	0.37
200_M	283_M	0.643	0.37
113_W	308_P	0.643	0.37
167_I	258_T	0.641	0.37
38_P	215_Q	0.639	0.37
41_N	47_S	0.638	0.37
93_P	99_F	0.634	0.37
178_R	253_T	0.634	0.37
93_P	141_W	0.634	0.37
93_P	298_N	0.633	0.37
189_V	192_S	0.631	0.36
61_A	225_E	0.628	0.36
204_E	228_N	0.627	0.36
206_Y	273_N	0.625	0.36
208_Y	229_Y	0.625	0.36
138_I	204_E	0.625	0.36
25_C	56_C	0.623	0.36
208_Y	275_F	0.622	0.36
71_A	121_P	0.622	0.36
234_L	286_Y	0.622	0.36
71_A	276_Y	0.622	0.36
220_A	312_R	0.621	0.36
85_D	282_W	0.621	0.36
141_W	300_Q	0.620	0.36
154_N	243_S	0.620	0.36
20_T	34_I	0.620	0.36
138_I	190_D	0.619	0.35
318_W	321_G	0.618	0.35
244_S	330_L	0.618	0.35
145_L	196_K	0.615	0.35
181_N	233_E	0.614	0.35
117_G	124_F	0.612	0.35
130_I	284_V	0.610	0.35
120_T	180_I	0.610	0.35
135_G	299_G	0.609	0.35
29_G	144_D	0.608	0.35
321_G	325_G	0.608	0.35
136_M	225_E	0.607	0.34
105_E	112_K	0.607	0.34
146_N	332_L	0.607	0.34
263_R	326_T	0.607	0.34
285_S	294_I	0.606	0.34
118_L	315_V	0.606	0.34
164_G	179_D	0.606	0.34
139_P	280_P	0.605	0.34
329_A	333_V	0.604	0.34
77_C	280_P	0.602	0.34
319_F	327_F	0.602	0.34
325_G	329_A	0.600	0.34
299_G	303_K	0.600	0.34
150_Q	177_F	0.599	0.34
289_E	316_A	0.597	0.34
143_F	229_Y	0.597	0.34
145_L	269_T	0.596	0.34
155_C	206_Y	0.595	0.34
78_G	129_R	0.594	0.33
119_L	304_V	0.593	0.33
32_D	228_N	0.590	0.33
148_E	326_T	0.588	0.33
192_S	200_M	0.588	0.33
27_S	171_T	0.586	0.33
21_G	32_D	0.584	0.33
141_W	191_A	0.584	0.33
123_G	127_A	0.582	0.32
117_G	306_G	0.582	0.32
207_S	295_F	0.581	0.32
134_T	283_M	0.581	0.32
12_S	170_E	0.580	0.32
116_K	250_I	0.578	0.32
87_L	269_T	0.576	0.32
124_F	161_Y	0.576	0.32
82_I	221_G	0.575	0.32
268_H	278_L	0.574	0.32
180_I	250_I	0.572	0.32
203_L	303_K	0.572	0.32
201_D	279_L	0.572	0.32
241_K	245_Y	0.571	0.32
84_A	110_F	0.571	0.32
19_E	177_F	0.570	0.32
126_S	222_Y	0.569	0.31
141_W	276_Y	0.569	0.31
61_A	279_L	0.568	0.31
74_C	299_G	0.566	0.31
60_G	77_C	0.566	0.31
185_L	304_V	0.564	0.31
97_I	210_E	0.563	0.31
112_K	325_G	0.563	0.31
118_L	310_I	0.563	0.31
59_C	77_C	0.560	0.31
59_C	139_P	0.560	0.31
280_P	299_G	0.560	0.31
159_H	256_G	0.558	0.31
50_E	277_V	0.558	0.31
113_W	288_Y	0.557	0.31
48_D	320_S	0.555	0.30
199_L	305_V	0.555	0.30
281_V	286_Y	0.555	0.30
66_E	69_T	0.554	0.30
184_Y	246_I	0.552	0.30
234_L	238_A	0.552	0.30
28_C	59_C	0.552	0.30
56_C	77_C	0.552	0.30
65_T	76_F	0.552	0.30
52_K	84_A	0.551	0.30
214_F	219_L	0.551	0.30
138_I	189_V	0.551	0.30
33_N	320_S	0.548	0.30
327_F	331_K	0.546	0.30
56_C	139_P	0.545	0.30
142_M	208_Y	0.545	0.30
183_D	236_P	0.545	0.30
236_P	268_H	0.543	0.29
113_W	118_L	0.542	0.29
246_I	267_I	0.541	0.29
23_L	37_L	0.540	0.29
19_E	263_R	0.539	0.29
17_D	270_K	0.539	0.29
6_K	194_K	0.538	0.29
27_S	67_A	0.538	0.29
207_S	258_T	0.537	0.29
261_N	329_A	0.537	0.29
78_G	299_G	0.536	0.29
93_P	137_Y	0.535	0.29
284_V	297_M	0.533	0.29
314_K	317_A	0.533	0.29
137_Y	302_G	0.533	0.29
75_S	81_A	0.532	0.29
197_D	200_M	0.532	0.29
311_S	317_A	0.530	0.28
195_M	200_M	0.530	0.28
42_I	45_R	0.530	0.28
153_A	260_V	0.529	0.28
218_Y	222_Y	0.528	0.28
80_A	225_E	0.528	0.28
207_S	326_T	0.527	0.28
54_Y	73_T	0.526	0.28
42_I	233_E	0.525	0.28
90_H	283_M	0.524	0.28
73_T	199_L	0.523	0.28
151_V	178_R	0.522	0.28
23_L	220_A	0.522	0.28
316_A	321_G	0.521	0.28
243_S	267_I	0.521	0.28
315_V	319_F	0.519	0.28
235_F	272_V	0.518	0.28
124_F	296_A	0.518	0.28
84_A	285_S	0.518	0.28
28_C	98_P	0.517	0.28
196_K	293_H	0.516	0.27
74_C	280_P	0.516	0.27
200_M	223_I	0.515	0.27
72_T	138_I	0.513	0.27
25_C	99_F	0.513	0.27
14_M	217_A	0.513	0.27
154_N	175_E	0.513	0.27
94_A	127_A	0.513	0.27
247_D	262_V	0.512	0.27
50_E	87_L	0.512	0.27
110_F	129_R	0.512	0.27
7_C	56_C	0.511	0.27
10_C	56_C	0.511	0.27
204_E	227_Y	0.509	0.27
26_S	29_G	0.508	0.27
143_F	231_D	0.504	0.27
173_H	178_R	0.503	0.27
25_C	59_C	0.503	0.27
117_G	180_I	0.503	0.27
16_F	100_T	0.501	0.26
268_H	271_N	0.500	0.26

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1vq8Z	1	0.1466	98.1	0.91	Contact Map
1pftA	1	0.1408	98	0.911	Contact Map
3h0gL	1	0.132	97.9	0.913	Contact Map
1dl6A	1	0.1466	97.7	0.917	Contact Map
1vd4A	1	0.132	97.3	0.923	Contact Map
4cgyA	1	0	97	0.927	Contact Map
4qiwP	1	0.1202	96.2	0.933	Contact Map
3h0gI	1	0.2405	95.9	0.935	Contact Map
1twfI	1	0.2727	95.8	0.935	Contact Map
3qt1I	1	0.1232	95.6	0.936	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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