GREMLIN Database
CITS - Sensor protein CitS
UniProt: O34427 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 542 (505)
Sequences: 10327 (9025)
Seq/√Len: 401.6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
513_Q516_G4.3241.00
464_S519_V4.3051.00
352_L364_I3.9331.00
475_I510_L3.9151.00
383_H386_Q3.8431.00
498_K502_R3.5731.00
440_V466_T3.4051.00
406_V447_E3.4031.00
509_E521_T3.3561.00
408_D451_F3.2791.00
227_E312_R3.1431.00
501_V522_V3.0201.00
458_D523_F2.9651.00
497_V508_I2.9171.00
428_I500_S2.9171.00
471_P474_K2.8471.00
451_F462_E2.8341.00
462_E519_V2.8171.00
215_Y219_N2.7961.00
233_N237_V2.7761.00
449_L464_S2.7691.00
510_L520_F2.7391.00
460_V523_F2.7201.00
420_I504_L2.7031.00
465_D469_G2.6731.00
408_D449_L2.6521.00
406_V449_L2.6491.00
214_L217_E2.6491.00
470_V474_K2.6351.00
461_I522_V2.5981.00
453_T460_V2.5411.00
500_S504_L2.5261.00
462_E521_T2.5001.00
244_S247_E2.4961.00
317_L321_I2.3851.00
324_L327_V2.3611.00
511_A519_V2.3571.00
404_K447_E2.3321.00
512_N518_A2.3291.00
447_E466_T2.3221.00
451_F464_S2.3211.00
501_V506_G2.2921.00
428_I501_V2.2731.00
475_I512_N2.2551.00
429_I461_I2.2281.00
258_L262_D2.2251.00
428_I497_V2.1551.00
460_V521_T2.1281.00
395_I399_S2.0861.00
349_L368_Y2.0661.00
439_A484_S2.0641.00
383_H394_K2.0571.00
440_V448_V2.0501.00
386_Q390_I2.0341.00
479_F508_I2.0241.00
454_D526_K2.0231.00
96_N100_D2.0151.00
477_A480_E1.9981.00
321_I325_T1.9551.00
421_G424_H1.9481.00
507_W523_F1.9101.00
386_Q394_K1.9071.00
228_G311_F1.8811.00
199_I202_D1.8621.00
319_K323_T1.8601.00
470_V478_V1.8371.00
351_L360_A1.8261.00
453_T462_E1.8181.00
230_I245_A1.8061.00
219_N223_F1.8041.00
386_Q393_G1.8031.00
383_H393_G1.8001.00
225_I229_I1.7951.00
511_A521_T1.7941.00
192_A196_A1.7831.00
212_A215_Y1.7761.00
228_G248_M1.7721.00
385_Q394_K1.7621.00
385_Q393_G1.7561.00
318_K321_I1.7371.00
420_I425_L1.7061.00
512_N516_G1.6971.00
424_H500_S1.6921.00
472_P475_I1.6901.00
230_I309_V1.6891.00
424_H427_T1.6771.00
502_R507_W1.6671.00
349_L369_A1.6541.00
429_I433_I1.6521.00
506_G524_I1.6481.00
409_E452_I1.6431.00
316_E319_K1.6421.00
512_N515_T1.6121.00
383_H395_I1.5971.00
474_K477_A1.5611.00
478_V510_L1.5541.00
484_S487_G1.5401.00
283_E318_K1.5361.00
438_E486_K1.5311.00
509_E523_F1.5311.00
474_K483_Y1.5221.00
243_V247_E1.5191.00
259_P262_D1.5091.00
440_V444_S1.5041.00
155_G162_L1.4931.00
251_L254_P1.4781.00
388_Q392_L1.4711.00
479_F510_L1.4601.00
436_A448_V1.4591.00
428_I522_V1.4571.00
271_S275_K1.4351.00
373_E423_S1.4301.00
63_K67_E1.4271.00
352_L365_K1.4231.00
362_D366_E1.4101.00
471_P514_K1.4091.00
209_H212_A1.4001.00
434_D438_E1.3971.00
151_S155_G1.3951.00
210_E214_L1.3951.00
429_I463_V1.3791.00
455_M460_V1.3711.00
386_Q395_I1.3571.00
81_E84_K1.3521.00
432_L522_V1.3461.00
218_R221_M1.3441.00
319_K322_D1.3431.00
477_A483_Y1.3421.00
218_R222_L1.3331.00
338_T343_N1.3291.00
214_L219_N1.3241.00
459_I526_K1.3241.00
347_A351_L1.3221.00
322_D325_T1.3211.00
52_T55_T1.3141.00
480_E483_Y1.3131.00
350_G354_L1.3131.00
283_E286_V1.3121.00
211_I214_L1.3121.00
142_P155_G1.3101.00
230_I238_V1.3091.00
106_G109_G1.3071.00
355_G358_D1.3041.00
113_L116_S1.2981.00
383_H390_I1.2981.00
348_I364_I1.2961.00
31_I35_V1.2901.00
501_V508_I1.2851.00
394_K430_G1.2821.00
243_V246_A1.2801.00
214_L218_R1.2741.00
45_A49_A1.2741.00
389_A393_G1.2681.00
232_T309_V1.2651.00
241_M245_A1.2641.00
270_M274_E1.2621.00
273_L276_G1.2601.00
384_S388_Q1.2541.00
246_A252_P1.2531.00
470_V510_L1.2501.00
470_V518_A1.2471.00
265_P268_G1.2461.00
323_T326_E1.2381.00
215_Y218_R1.2371.00
425_L504_L1.2361.00
241_M246_A1.2341.00
365_K369_A1.2301.00
372_N376_D1.2301.00
347_A367_E1.2291.00
228_G245_A1.2191.00
393_G397_K1.2171.00
228_G242_N1.2131.00
245_A249_L1.2041.00
472_P513_Q1.1981.00
478_V520_F1.1981.00
337_Q378_L1.1941.00
386_Q389_A1.1921.00
42_R46_E1.1811.00
38_T42_R1.1801.00
441_A444_S1.1771.00
197_K201_K1.1751.00
231_A306_G1.1741.00
112_K115_R1.1741.00
410_N453_T1.1731.00
458_D507_W1.1701.00
440_V443_Q1.1691.00
320_L323_T1.1691.00
320_L324_L1.1601.00
424_H503_E1.1601.00
49_A52_T1.1571.00
479_F520_F1.1561.00
340_E343_N1.1421.00
196_A200_R1.1331.00
318_K322_D1.1311.00
112_K116_S1.1271.00
328_R332_E1.1241.00
449_L466_T1.1231.00
474_K485_S1.1171.00
510_L518_A1.1161.00
432_L463_V1.1161.00
65_L69_K1.1141.00
91_A160_D1.1131.00
232_T238_V1.1081.00
49_A53_A1.1051.00
347_A363_L1.0981.00
242_N245_A1.0941.00
398_A437_F1.0941.00
317_L324_L1.0931.00
385_Q396_S1.0901.00
297_V306_G1.0891.00
398_A405_L1.0891.00
386_Q396_S1.0851.00
222_L240_M1.0841.00
391_L394_K1.0831.00
328_R331_S1.0821.00
76_T80_I1.0791.00
390_I393_G1.0741.00
335_R340_E1.0731.00
386_Q391_L1.0731.00
388_Q452_I1.0631.00
351_L363_L1.0601.00
65_L68_R1.0581.00
212_A216_R1.0521.00
470_V475_I1.0491.00
297_V304_A1.0481.00
363_L367_E1.0431.00
341_F344_K1.0431.00
392_L395_I1.0421.00
393_G426_I1.0401.00
385_Q389_A1.0351.00
44_Q47_Q1.0311.00
427_T500_S1.0261.00
468_P487_G1.0231.00
35_V39_Q1.0191.00
492_Y496_N1.0191.00
341_F371_Q1.0181.00
152_Q155_G1.0171.00
190_I194_V1.0161.00
50_V54_R1.0131.00
426_I430_G1.0091.00
33_L37_H1.0091.00
432_L497_V0.9981.00
389_A426_I0.9981.00
295_T298_M0.9951.00
241_M255_V0.9901.00
509_E522_V0.9901.00
299_N304_A0.9871.00
452_I461_I0.9831.00
282_Q285_S0.9791.00
359_E363_L0.9781.00
346_Y349_L0.9771.00
359_E362_D0.9681.00
433_I450_F0.9671.00
343_N439_A0.9651.00
317_L320_L0.9611.00
422_L426_I0.9611.00
383_H388_Q0.9601.00
390_I394_K0.9601.00
413_L452_I0.9591.00
295_T307_I0.9581.00
443_Q466_T0.9581.00
118_E122_G0.9571.00
222_L229_I0.9551.00
339_H431_N0.9521.00
223_F243_V0.9511.00
349_L352_L0.9501.00
117_R121_F0.9501.00
229_I310_S0.9491.00
289_Q292_I0.9491.00
432_L520_F0.9471.00
419_H527_E0.9431.00
364_I368_Y0.9411.00
351_L364_I0.9391.00
82_Q86_Q0.9381.00
41_E45_A0.9371.00
501_V524_I0.9341.00
385_Q390_I0.9331.00
398_A448_V0.9321.00
470_V512_N0.9301.00
68_R71_G0.9291.00
450_F463_V0.9281.00
428_I504_L0.9261.00
410_N413_L0.9241.00
342_S379_F0.9231.00
391_L395_I0.9221.00
340_E344_K0.9211.00
174_L178_S0.9211.00
385_Q422_L0.9201.00
95_L101_I0.9171.00
349_L353_E0.9141.00
35_V38_T0.9141.00
155_G159_V0.9121.00
198_S202_D0.9071.00
93_Y101_I0.9071.00
481_R499_D0.9011.00
111_K115_R0.9001.00
377_L424_H0.8991.00
245_A248_M0.8971.00
231_A240_M0.8961.00
134_R138_R0.8951.00
294_N312_R0.8951.00
231_A308_V0.8921.00
457_H526_K0.8911.00
352_L361_I0.8871.00
342_S371_Q0.8851.00
30_T34_A0.8801.00
470_V476_E0.8801.00
232_T236_G0.8771.00
43_R46_E0.8761.00
132_D136_V0.8761.00
246_A255_V0.8721.00
353_E365_K0.8721.00
389_A422_L0.8721.00
397_K400_E0.8691.00
341_F374_Q0.8661.00
45_A48_L0.8661.00
48_L51_Q0.8651.00
342_S372_N0.8651.00
29_L33_L0.8621.00
314_K318_K0.8541.00
78_E81_E0.8501.00
48_L52_T0.8501.00
211_I215_Y0.8481.00
118_E123_G0.8481.00
340_E427_T0.8461.00
367_E370_I0.8451.00
348_I368_Y0.8441.00
79_V83_M0.8431.00
202_D206_L0.8411.00
222_L242_N0.8411.00
380_H424_H0.8391.00
433_I448_V0.8391.00
144_I153_V0.8371.00
383_H396_S0.8351.00
119_I123_G0.8341.00
291_F294_N0.8341.00
352_L368_Y0.8331.00
67_E70_D0.8321.00
86_Q89_A0.8291.00
394_K398_A0.8281.00
354_L360_A0.8281.00
129_T132_D0.8251.00
91_A104_A0.8201.00
396_S399_S0.8201.00
425_L522_V0.8191.00
79_V82_Q0.8181.00
397_K401_K0.8181.00
333_D337_Q0.8151.00
349_L372_N0.8141.00
340_E496_N0.8141.00
381_N499_D0.8131.00
341_F375_H0.8131.00
244_S248_M0.8121.00
228_G249_L0.8121.00
162_L165_E0.8111.00
136_V139_G0.8111.00
225_I228_G0.8091.00
171_K174_L0.8091.00
59_M62_V0.8071.00
41_E44_Q0.8061.00
378_L382_I0.8041.00
499_D502_R0.8031.00
27_G31_I0.8021.00
336_A481_R0.8021.00
239_T306_G0.8011.00
360_A363_L0.8011.00
317_L323_T0.7991.00
233_N239_T0.7991.00
392_L396_S0.7991.00
225_I310_S0.7981.00
44_Q48_L0.7971.00
341_F345_L0.7941.00
333_D343_N0.7931.00
237_V259_P0.7931.00
506_G525_P0.7911.00
96_N99_G0.7911.00
402_K442_E0.7911.00
129_T140_S0.7901.00
81_E85_E0.7891.00
403_V440_V0.7881.00
439_A487_G0.7871.00
334_L337_Q0.7871.00
465_D517_G0.7871.00
138_R160_D0.7861.00
344_K371_Q0.7841.00
140_S156_S0.7821.00
64_E68_R0.7811.00
438_E484_S0.7801.00
468_P518_A0.7791.00
335_R374_Q0.7771.00
338_T342_S0.7761.00
331_S335_R0.7751.00
204_L208_P0.7721.00
271_S276_G0.7721.00
133_G136_V0.7701.00
332_E336_A0.7681.00
158_S162_L0.7681.00
343_N350_G0.7661.00
276_G279_L0.7661.00
497_V501_V0.7651.00
455_M458_D0.7641.00
427_T496_N0.7611.00
217_E221_M0.7611.00
439_A486_K0.7581.00
229_I242_N0.7561.00
332_E481_R0.7561.00
333_D338_T0.7551.00
289_Q313_E0.7551.00
213_A217_E0.7521.00
66_I70_D0.7501.00
242_N315_T0.7501.00
295_T309_V0.7481.00
342_S376_D0.7481.00
65_L70_D0.7471.00
138_R141_A0.7451.00
401_K405_L0.7421.00
280_P283_E0.7391.00
429_I522_V0.7371.00
209_H213_A0.7351.00
75_Q79_V0.7341.00
408_D453_T0.7331.00
163_Q167_E0.7331.00
391_L407_I0.7331.00
323_T327_V0.7321.00
145_K154_I0.7321.00
484_S488_M0.7301.00
76_T83_M0.7281.00
288_D292_I0.7281.00
340_E431_N0.7281.00
140_S158_S0.7261.00
111_K114_E0.7251.00
32_T36_Q0.7241.00
501_V504_L0.7241.00
403_V437_F0.7231.00
210_E215_Y0.7221.00
367_E371_Q0.7221.00
34_A38_T0.7171.00
296_K308_V0.7161.00
438_E485_S0.7151.00
381_N481_R0.7151.00
337_Q341_F0.7151.00
217_E240_M0.7151.00
264_M268_G0.7131.00
142_P154_I0.7131.00
385_Q388_Q0.7121.00
335_R492_Y0.7121.00
330_Y334_L0.7111.00
272_V275_K0.7111.00
351_L367_E0.7111.00
186_L190_I0.7101.00
145_K152_Q0.7091.00
36_Q40_G0.7081.00
394_K437_F0.7081.00
476_E480_E0.7071.00
299_N302_G0.7071.00
101_I104_A0.7061.00
175_R179_V0.7061.00
334_L343_N0.7051.00
205_G208_P0.7031.00
141_A144_I0.7011.00
333_D379_F0.7001.00
232_T295_T0.7001.00
397_K434_D0.6991.00
172_K175_R0.6991.00
93_Y96_N0.6981.00
462_E511_A0.6971.00
314_K317_L0.6971.00
379_F490_R0.6971.00
93_Y104_A0.6961.00
157_V162_L0.6961.00
436_A463_V0.6931.00
75_Q78_E0.6931.00
289_Q293_I0.6931.00
66_I71_G0.6921.00
331_S340_E0.6921.00
238_V242_N0.6901.00
144_I155_G0.6891.00
118_E121_F0.6891.00
481_R495_A0.6881.00
248_M291_F0.6871.00
458_D526_K0.6871.00
65_L71_G0.6861.00
95_L158_S0.6851.00
377_L490_R0.6830.99
403_V448_V0.6830.99
484_S490_R0.6820.99
447_E464_S0.6820.99
384_S452_I0.6810.99
171_K175_R0.6800.99
384_S394_K0.6790.99
62_V66_I0.6780.99
325_T328_R0.6780.99
373_E377_L0.6770.99
269_L273_L0.6760.99
176_N179_V0.6750.99
224_A308_V0.6740.99
376_D380_H0.6730.99
282_Q286_V0.6730.99
470_V494_L0.6720.99
333_D484_S0.6720.99
80_I84_K0.6710.99
306_G311_F0.6700.99
230_I311_F0.6700.99
366_E389_A0.6680.99
139_G142_P0.6670.99
155_G161_F0.6660.99
46_E49_A0.6640.99
401_K437_F0.6630.99
181_A185_L0.6630.99
198_S201_K0.6630.99
338_T439_A0.6620.99
155_G163_Q0.6620.99
472_P476_E0.6610.99
189_F193_A0.6610.99
258_L263_V0.6610.99
193_A197_K0.6600.99
221_M224_A0.6590.99
53_A159_V0.6580.99
227_E244_S0.6580.99
427_T430_G0.6570.99
188_G192_A0.6560.99
402_K443_Q0.6550.99
281_N285_S0.6530.99
508_I522_V0.6530.99
11_Q197_K0.6520.99
51_Q55_T0.6500.99
132_D138_R0.6490.99
222_L231_A0.6480.99
340_E374_Q0.6480.99
390_I433_I0.6470.99
343_N347_A0.6450.99
335_R341_F0.6430.99
413_L418_A0.6430.99
53_A57_S0.6430.99
82_Q85_E0.6420.99
481_R492_Y0.6420.99
272_V307_I0.6410.99
471_P478_V0.6400.99
230_I242_N0.6400.99
368_Y372_N0.6380.99
245_A309_V0.6380.99
231_A239_T0.6370.99
384_S409_E0.6360.99
47_Q51_Q0.6360.99
458_D525_P0.6350.99
455_M523_F0.6320.99
315_T319_K0.6310.99
339_H343_N0.6310.99
63_K70_D0.6310.99
221_M231_A0.6300.99
360_A364_I0.6290.99
228_G313_E0.6280.99
343_N438_E0.6270.99
217_E222_L0.6270.99
38_T41_E0.6260.99
462_E522_V0.6250.99
239_T242_N0.6240.99
373_E376_D0.6240.99
111_K116_S0.6240.99
439_A468_P0.6230.99
335_R343_N0.6220.99
336_A486_K0.6220.99
136_V160_D0.6210.99
155_G160_D0.6210.99
344_K482_G0.6190.99
292_I312_R0.6170.99
346_Y352_L0.6160.99
403_V466_T0.6150.99
231_A245_A0.6130.99
270_M276_G0.6120.99
273_L277_E0.6120.99
335_R338_T0.6120.99
73_A76_T0.6110.99
346_Y350_G0.6110.99
125_H140_S0.6100.99
469_G517_G0.6090.99
96_N102_R0.6070.99
76_T79_V0.6070.99
242_N248_M0.6070.99
343_N379_F0.6050.99
350_G368_Y0.6010.99
220_A224_A0.6010.99
479_F498_K0.6010.99
470_V520_F0.6000.99
393_G396_S0.6000.99
343_N354_L0.5990.99
341_F351_L0.5980.99
347_A350_G0.5970.99
342_S346_Y0.5960.99
330_Y336_A0.5960.99
117_R120_L0.5960.99
322_D326_E0.5950.99
59_M63_K0.5950.99
391_L450_F0.5950.99
249_L311_F0.5950.99
438_E487_G0.5950.99
74_A78_E0.5940.99
343_N440_V0.5930.99
482_G495_A0.5930.99
522_V525_P0.5930.99
131_A138_R0.5930.99
106_G110_L0.5910.99
383_H461_I0.5910.99
216_R220_A0.5900.99
336_A381_N0.5900.99
53_A56_I0.5890.99
350_G427_T0.5880.99
470_V479_F0.5880.99
31_I34_A0.5880.99
128_E132_D0.5870.98
134_R141_A0.5860.98
435_N493_G0.5850.98
212_A218_R0.5840.98
201_K204_L0.5830.98
385_Q398_A0.5830.98
371_Q377_L0.5830.98
200_R203_T0.5820.98
440_V484_S0.5820.98
346_Y351_L0.5820.98
182_V186_L0.5790.98
431_N490_R0.5780.98
224_A231_A0.5780.98
370_I374_Q0.5770.98
118_E125_H0.5770.98
439_A485_S0.5760.98
217_E231_A0.5750.98
293_I297_V0.5740.98
424_H428_I0.5740.98
424_H504_L0.5740.98
138_R143_I0.5740.98
343_N346_Y0.5730.98
196_A199_I0.5730.98
385_Q391_L0.5710.98
177_L180_I0.5710.98
368_Y371_Q0.5700.98
425_L501_V0.5690.98
423_S426_I0.5690.98
141_A145_K0.5690.98
231_A309_V0.5680.98
371_Q378_L0.5680.98
245_A311_F0.5670.98
246_A251_L0.5670.98
137_I140_S0.5660.98
346_Y354_L0.5660.98
234_R304_A0.5650.98
336_A343_N0.5640.98
430_G434_D0.5640.98
64_E69_K0.5640.98
12_T15_M0.5630.98
230_I241_M0.5630.98
156_S160_D0.5620.98
269_L272_V0.5620.98
249_L291_F0.5590.98
79_V87_T0.5580.98
347_A354_L0.5580.98
221_M308_V0.5570.98
369_A373_E0.5570.98
321_I324_L0.5560.98
93_Y99_G0.5550.98
94_V157_V0.5540.98
346_Y481_R0.5540.98
370_I426_I0.5540.98
234_R303_Q0.5520.98
73_A77_Q0.5520.98
231_A242_N0.5500.98
237_V257_H0.5500.98
344_K375_H0.5500.98
508_I520_F0.5490.98
342_S367_E0.5490.98
238_V257_H0.5480.98
43_R47_Q0.5470.98
164_T168_Q0.5470.98
494_L520_F0.5460.98
117_R123_G0.5460.98
471_P485_S0.5450.98
221_M228_G0.5450.98
361_I364_I0.5450.98
107_K110_L0.5440.98
393_G430_G0.5440.98
431_N434_D0.5430.98
87_T90_F0.5420.97
431_N496_N0.5410.97
26_I34_A0.5410.97
225_I308_V0.5410.97
39_Q42_R0.5400.97
290_V293_I0.5400.97
260_I263_V0.5390.97
46_E50_V0.5390.97
385_Q420_I0.5390.97
230_I233_N0.5380.97
25_V29_L0.5380.97
230_I236_G0.5350.97
155_G158_S0.5350.97
227_E310_S0.5340.97
346_Y367_E0.5340.97
101_I105_S0.5330.97
370_I430_G0.5330.97
384_S395_I0.5320.97
18_I23_V0.5320.97
16_G20_A0.5300.97
346_Y353_E0.5290.97
433_I463_V0.5290.97
343_N371_Q0.5280.97
292_I317_L0.5270.97
129_T138_R0.5270.97
345_L351_L0.5250.97
64_E67_E0.5250.97
410_N452_I0.5250.97
159_V162_L0.5240.97
120_L124_S0.5240.97
425_L524_I0.5230.97
232_T260_I0.5230.97
275_K279_L0.5230.97
166_T170_I0.5230.97
146_E151_S0.5230.97
47_Q50_V0.5220.97
307_I311_F0.5220.97
367_E379_F0.5220.97
394_K433_I0.5210.97
344_K496_N0.5210.97
388_Q407_I0.5200.97
77_Q80_I0.5190.97
387_V394_K0.5170.97
22_L25_V0.5170.97
404_K407_I0.5170.97
228_G232_T0.5160.97
501_V507_W0.5150.97
129_T136_V0.5140.97
153_V157_V0.5140.97
334_L346_Y0.5130.97
229_I240_M0.5120.96
209_H215_Y0.5110.96
438_E488_M0.5100.96
78_E82_Q0.5100.96
330_Y338_T0.5100.96
39_Q43_R0.5090.96
195_L199_I0.5090.96
76_T103_S0.5080.96
343_N484_S0.5080.96
77_Q81_E0.5080.96
343_N375_H0.5070.96
214_L221_M0.5070.96
251_L255_V0.5070.96
84_K87_T0.5060.96
99_G105_S0.5060.96
194_V198_S0.5060.96
257_H263_V0.5060.96
383_H389_A0.5060.96
140_S143_I0.5030.96
192_A200_R0.5030.96
93_Y105_S0.5030.96
444_S466_T0.5030.96
484_S489_R0.5030.96
42_R45_A0.5020.96
136_V140_S0.5020.96
242_N313_E0.5010.96
367_E481_R0.5010.96
134_R140_S0.5000.96
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4i5sA 2 0.5941 100 0.458 Contact Map
4gczA 2 0.6052 100 0.465 Contact Map
3a0rA 2 0.5609 100 0.473 Contact Map
4r3aA 1 0.5406 100 0.563 Contact Map
2c2aA 2 0.3948 100 0.603 Contact Map
3jz3A 2 0.2583 100 0.616 Contact Map
4q20A 2 0.3727 100 0.617 Contact Map
3d36A 2 0.3708 100 0.619 Contact Map
4e01A 3 0.4945 100 0.621 Contact Map
4mpcA 2 0.5461 100 0.621 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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