YJQC - BACSU - GREMLIN Contacts

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YJQC - Uncharacterized protein YjqC

UniProt:	O34423	Sequences: MFYHIKELQYQAKPAHPDPVYAKKLQEVLGGQFGEISVMMQYLFQGFNCRADAKYKDLLYDVGTEEIGHVEMLATMISRLLDNAPADVQEDAYKSNPAIAAVMSGMNPQHAIVSGLGAMASDSEGYPWNAKYIISSGNLLADFRANLNAEAQGRLQVTRLYAMTDDPGVRDMLSFLIARDTYHQNMWYAAIKELEERERDIVVPTTFPRELEKQEVSYDLFNFSRGDESSQGRWAHGEAFDGRGEFRYIPAPIAFASAPHLKPAPMWLHNTVPPMSKC	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	278 (262)
Sequences:	622 (235)
Seq/√Len:	14.5

BACSU - YJQC MCAT COTJC

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
29_L	77_I	6.174	1.00
39_M	67_I	6.156	1.00
10_Y	171_D	4.404	1.00
122_D	126_Y	3.998	1.00
32_Q	132_Y	3.887	1.00
2_F	43_L	3.451	0.99
219_D	247_R	3.260	0.99
58_L	220_L	3.208	0.98
28_V	157_V	3.194	0.98
62_V	186_M	3.164	0.98
58_L	87_D	2.769	0.96
23_K	124_E	2.657	0.95
76_M	172_M	2.595	0.94
43_L	63_G	2.507	0.93
114_S	119_M	2.453	0.92
127_P	131_K	2.444	0.92
158_T	177_I	2.434	0.92
28_V	36_I	2.424	0.92
239_A	242_G	2.350	0.91
15_A	167_P	2.305	0.90
237_G	240_F	2.191	0.87
126_Y	131_K	2.117	0.85
185_N	240_F	2.004	0.82
27_E	128_W	2.000	0.82
50_R	82_D	1.983	0.81
140_L	191_I	1.930	0.79
206_T	209_R	1.913	0.79
58_L	62_V	1.891	0.78
241_D	244_G	1.865	0.77
49_C	62_V	1.836	0.76
92_A	100_A	1.828	0.75
23_K	107_N	1.825	0.75
48_N	117_G	1.737	0.71
248_Y	252_P	1.730	0.71
93_Y	103_M	1.719	0.71
145_A	148_N	1.716	0.71
4_H	41_Q	1.707	0.70
11_Q	130_A	1.700	0.70
80_L	169_V	1.688	0.69
62_V	143_F	1.652	0.67
153_G	180_D	1.650	0.67
180_D	187_W	1.646	0.67
56_K	230_S	1.631	0.66
258_A	263_P	1.603	0.65
165_D	170_R	1.595	0.65
23_K	162_A	1.577	0.64
61_D	222_N	1.564	0.63
38_V	187_W	1.559	0.63
38_V	149_A	1.484	0.59
238_E	245_E	1.481	0.59
29_L	73_L	1.470	0.58
43_L	67_I	1.470	0.58
157_V	177_I	1.465	0.58
218_Y	242_G	1.461	0.58
76_M	80_L	1.449	0.57
68_G	74_A	1.439	0.56
242_G	245_E	1.393	0.54
47_F	60_Y	1.372	0.53
134_I	148_N	1.372	0.53
62_V	70_V	1.358	0.52
6_K	61_D	1.347	0.51
41_Q	145_A	1.341	0.51
99_I	105_G	1.316	0.50
54_K	193_E	1.307	0.49
61_D	144_R	1.295	0.49
164_T	172_M	1.295	0.49
38_V	180_D	1.287	0.48
250_P	253_I	1.284	0.48
147_L	229_S	1.271	0.47
218_Y	239_A	1.269	0.47
39_M	176_L	1.266	0.47
63_G	118_A	1.264	0.47
24_K	108_P	1.254	0.46
60_Y	135_S	1.253	0.46
93_Y	104_S	1.251	0.46
2_F	122_D	1.238	0.45
5_I	205_T	1.227	0.45
74_A	100_A	1.218	0.44
29_L	170_R	1.216	0.44
113_V	156_Q	1.213	0.44
144_R	147_L	1.200	0.43
214_Q	217_S	1.188	0.43
89_Q	225_R	1.187	0.43
29_L	157_V	1.186	0.43
181_T	209_R	1.186	0.43
168_G	171_D	1.178	0.42
264_A	268_L	1.168	0.42
96_N	101_A	1.161	0.41
121_S	131_K	1.157	0.41
46_G	196_E	1.154	0.41
109_Q	122_D	1.154	0.41
39_M	49_C	1.150	0.41
165_D	245_E	1.137	0.40
52_D	64_T	1.135	0.40
135_S	142_D	1.128	0.39
82_D	147_L	1.119	0.39
4_H	145_A	1.112	0.39
74_A	83_N	1.110	0.39
114_S	135_S	1.098	0.38
264_A	267_W	1.096	0.38
114_S	117_G	1.090	0.37
1_M	8_L	1.087	0.37
43_L	70_V	1.087	0.37
148_N	162_A	1.075	0.37
247_R	250_P	1.072	0.37
147_L	151_A	1.071	0.36
55_Y	139_L	1.070	0.36
107_N	110_H	1.068	0.36
100_A	263_P	1.059	0.36
99_I	103_M	1.051	0.35
46_G	60_Y	1.050	0.35
63_G	68_G	1.048	0.35
27_E	190_A	1.044	0.35
17_P	81_L	1.044	0.35
182_Y	220_L	1.041	0.35
68_G	268_L	1.039	0.35
265_P	268_L	1.028	0.34
91_D	163_M	1.023	0.34
123_S	152_Q	1.020	0.34
147_L	188_Y	1.019	0.34
3_Y	239_A	1.013	0.34
132_Y	148_N	1.004	0.33
144_R	151_A	0.999	0.33
29_L	36_I	0.993	0.33
43_L	48_N	0.990	0.32
241_D	256_A	0.980	0.32
122_D	185_N	0.979	0.32
107_N	111_A	0.979	0.32
233_R	240_F	0.972	0.32
130_A	162_A	0.971	0.32
28_V	68_G	0.969	0.31
129_N	132_Y	0.957	0.31
261_L	264_A	0.956	0.31
146_N	159_R	0.942	0.30
6_K	102_V	0.940	0.30
251_A	260_H	0.939	0.30
102_V	175_F	0.939	0.30
14_P	76_M	0.939	0.30
9_Q	185_N	0.936	0.30
219_D	249_I	0.928	0.30
239_A	243_R	0.925	0.29
105_G	112_I	0.923	0.29
114_S	122_D	0.923	0.29
46_G	143_F	0.923	0.29
67_I	70_V	0.922	0.29
190_A	223_F	0.919	0.29
130_A	240_F	0.909	0.29
109_Q	151_A	0.909	0.29
250_P	254_A	0.909	0.29
37_S	152_Q	0.908	0.29
52_D	70_V	0.904	0.28
28_V	73_L	0.892	0.28
76_M	166_D	0.889	0.28
141_A	184_Q	0.886	0.28
98_A	106_M	0.885	0.28
25_L	73_L	0.883	0.27
192_K	203_V	0.880	0.27
236_H	260_H	0.880	0.27
120_A	130_A	0.874	0.27
213_K	217_S	0.868	0.27
109_Q	113_V	0.867	0.27
29_L	70_V	0.864	0.27
171_D	174_S	0.861	0.27
60_Y	83_N	0.861	0.27
20_V	106_M	0.860	0.26
185_N	239_A	0.860	0.26
20_V	23_K	0.859	0.26
48_N	118_A	0.858	0.26
151_A	184_Q	0.855	0.26
249_I	252_P	0.855	0.26
44_F	135_S	0.845	0.26
37_S	41_Q	0.844	0.26
6_K	226_G	0.840	0.26
164_T	173_L	0.838	0.26
249_I	253_I	0.836	0.25
53_A	197_R	0.832	0.25
91_D	95_S	0.830	0.25
17_P	239_A	0.829	0.25
19_P	51_A	0.822	0.25
26_Q	29_L	0.820	0.25
126_Y	218_Y	0.819	0.25
41_Q	180_D	0.817	0.25
191_I	216_V	0.812	0.24
190_A	204_P	0.811	0.24
23_K	110_H	0.810	0.24
60_Y	108_P	0.808	0.24
148_N	191_I	0.806	0.24
40_M	135_S	0.805	0.24
80_L	128_W	0.804	0.24
27_E	80_L	0.804	0.24
60_Y	102_V	0.797	0.24
228_E	231_Q	0.794	0.24
129_N	191_I	0.791	0.24
32_Q	148_N	0.788	0.24
256_A	261_L	0.788	0.24
52_D	58_L	0.781	0.23
16_H	132_Y	0.781	0.23
93_Y	98_A	0.780	0.23
68_G	175_F	0.777	0.23
80_L	166_D	0.777	0.23
218_Y	244_G	0.775	0.23
76_M	169_V	0.774	0.23
2_F	64_T	0.773	0.23
188_Y	192_K	0.773	0.23
82_D	229_S	0.772	0.23
24_K	46_G	0.770	0.23
104_S	193_E	0.769	0.23
98_A	215_E	0.767	0.23
1_M	4_H	0.766	0.23
207_F	218_Y	0.764	0.23
1_M	9_Q	0.763	0.23
48_N	114_S	0.758	0.22
221_F	247_R	0.757	0.22
222_N	248_Y	0.757	0.22
165_D	225_R	0.755	0.22
68_G	257_S	0.755	0.22
233_R	236_H	0.753	0.22
14_P	112_I	0.750	0.22
232_G	235_A	0.744	0.22
107_N	261_L	0.743	0.22
154_R	212_E	0.743	0.22
40_M	208_P	0.741	0.22
48_N	63_G	0.738	0.22
260_H	263_P	0.735	0.21
149_A	168_G	0.734	0.21
133_I	143_F	0.733	0.21
104_S	108_P	0.730	0.21
18_D	116_L	0.729	0.21
182_Y	218_Y	0.729	0.21
17_P	82_D	0.728	0.21
6_K	222_N	0.726	0.21
126_Y	129_N	0.724	0.21
31_G	34_G	0.721	0.21
30_G	34_G	0.721	0.21
51_A	100_A	0.721	0.21
59_L	193_E	0.718	0.21
3_Y	122_D	0.716	0.21
78_S	85_P	0.709	0.21
159_R	184_Q	0.709	0.21
83_N	98_A	0.708	0.20
21_Y	126_Y	0.703	0.20
62_V	182_Y	0.703	0.20
33_F	136_S	0.703	0.20
55_Y	193_E	0.702	0.20
208_P	244_G	0.701	0.20
203_V	207_F	0.700	0.20
255_F	266_M	0.697	0.20
57_D	232_G	0.693	0.20
222_N	249_I	0.691	0.20
14_P	223_F	0.689	0.20
171_D	211_L	0.689	0.20
19_P	105_G	0.686	0.20
21_Y	24_K	0.685	0.20
130_A	139_L	0.684	0.20
26_Q	161_Y	0.683	0.20
118_A	208_P	0.682	0.20
96_N	102_V	0.682	0.20
62_V	235_A	0.677	0.19
74_A	207_F	0.673	0.19
13_K	79_R	0.671	0.19
128_W	190_A	0.670	0.19
76_M	113_V	0.669	0.19
61_D	70_V	0.669	0.19
54_K	226_G	0.668	0.19
52_D	63_G	0.666	0.19
54_K	139_L	0.665	0.19
5_I	75_T	0.662	0.19
145_A	185_N	0.662	0.19
236_H	245_E	0.659	0.19
115_G	137_G	0.656	0.19
19_P	86_A	0.653	0.19
3_Y	225_R	0.653	0.19
29_L	153_G	0.653	0.19
27_E	33_F	0.652	0.19
43_L	75_T	0.652	0.19
77_I	143_F	0.651	0.18
157_V	176_L	0.649	0.18
33_F	70_V	0.646	0.18
79_R	170_R	0.646	0.18
37_S	128_W	0.645	0.18
215_E	246_F	0.645	0.18
136_S	141_A	0.643	0.18
5_I	222_N	0.641	0.18
37_S	177_I	0.639	0.18
23_K	122_D	0.637	0.18
231_Q	234_W	0.636	0.18
79_R	261_L	0.634	0.18
61_D	158_T	0.632	0.18
77_I	211_L	0.632	0.18
31_G	35_E	0.629	0.18
30_G	35_E	0.629	0.18
93_Y	191_I	0.626	0.18
218_Y	221_F	0.623	0.18
77_I	256_A	0.623	0.18
81_L	223_F	0.621	0.18
101_A	105_G	0.616	0.17
93_Y	97_P	0.615	0.17
169_V	195_E	0.611	0.17
159_R	172_M	0.609	0.17
27_E	37_S	0.605	0.17
81_L	242_G	0.603	0.17
122_D	125_G	0.602	0.17
37_S	195_E	0.600	0.17
43_L	68_G	0.598	0.17
15_A	176_L	0.598	0.17
87_D	216_V	0.595	0.17
16_H	129_N	0.593	0.17
151_A	249_I	0.592	0.17
56_K	177_I	0.589	0.17
93_Y	100_A	0.589	0.17
149_A	234_W	0.587	0.16
8_L	84_A	0.585	0.16
29_L	62_V	0.585	0.16
81_L	173_L	0.583	0.16
102_V	133_I	0.582	0.16
154_R	177_I	0.581	0.16
7_E	79_R	0.581	0.16
226_G	232_G	0.580	0.16
92_A	97_P	0.579	0.16
16_H	151_A	0.579	0.16
147_L	191_I	0.575	0.16
27_E	132_Y	0.572	0.16
207_F	211_L	0.571	0.16
42_Y	142_D	0.570	0.16
128_W	156_Q	0.569	0.16
40_M	63_G	0.567	0.16
99_I	102_V	0.566	0.16
97_P	104_S	0.566	0.16
8_L	261_L	0.566	0.16
9_Q	256_A	0.566	0.16
84_A	264_A	0.565	0.16
68_G	223_F	0.561	0.16
38_V	178_A	0.560	0.16
12_A	79_R	0.560	0.16
188_Y	266_M	0.560	0.16
260_H	265_P	0.558	0.16
44_F	153_G	0.558	0.16
49_C	139_L	0.557	0.16
21_Y	25_L	0.557	0.16
217_S	239_A	0.556	0.16
133_I	176_L	0.554	0.15
58_L	133_I	0.553	0.15
211_L	214_Q	0.552	0.15
90_E	106_M	0.552	0.15
98_A	260_H	0.551	0.15
4_H	8_L	0.550	0.15
131_K	134_I	0.549	0.15
106_M	188_Y	0.549	0.15
46_G	49_C	0.543	0.15
227_D	250_P	0.541	0.15
27_E	156_Q	0.540	0.15
165_D	260_H	0.540	0.15
95_S	99_I	0.539	0.15
123_S	212_E	0.539	0.15
136_S	154_R	0.537	0.15
182_Y	246_F	0.536	0.15
54_K	101_A	0.536	0.15
108_P	141_A	0.536	0.15
138_N	154_R	0.536	0.15
29_L	99_I	0.535	0.15
14_P	79_R	0.534	0.15
213_K	216_V	0.533	0.15
130_A	206_T	0.532	0.15
121_S	263_P	0.531	0.15
77_I	213_K	0.531	0.15
140_L	152_Q	0.531	0.15
233_R	238_E	0.530	0.15
100_A	104_S	0.530	0.15
22_A	30_G	0.530	0.15
22_A	31_G	0.530	0.15
119_M	133_I	0.530	0.15
20_V	104_S	0.530	0.15
55_Y	184_Q	0.529	0.15
28_V	38_V	0.527	0.15
206_T	264_A	0.526	0.15
2_F	67_I	0.524	0.15
9_Q	184_Q	0.523	0.15
89_Q	110_H	0.523	0.15
129_N	264_A	0.522	0.15
37_S	268_L	0.522	0.15
82_D	264_A	0.521	0.15
149_A	187_W	0.517	0.14
206_T	265_P	0.516	0.14
130_A	134_I	0.515	0.14
144_R	195_E	0.514	0.14
21_Y	189_A	0.511	0.14
62_V	128_W	0.511	0.14
51_A	225_R	0.510	0.14
126_Y	146_N	0.508	0.14
3_Y	7_E	0.507	0.14
9_Q	84_A	0.504	0.14
152_Q	235_A	0.501	0.14
12_A	248_Y	0.500	0.14

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2v8tA	5	0.9928	100	0.359	Contact Map
1o9iA	6	0.9568	100	0.364	Contact Map
4di0A	2	0.482	98.4	0.918	Contact Map
4cvrA	2	0.5432	98.4	0.918	Contact Map
2fzfA	2	0.5647	98.3	0.919	Contact Map
4tofA	6	0.5468	98.3	0.92	Contact Map
3uoiA	7	0.554	98.2	0.923	Contact Map
3fvbA	6	0.554	98	0.925	Contact Map
3r2kA	6	0.5324	98	0.926	Contact Map
1nfvA	7	0.5827	98	0.926	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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