MNTA - BACSU - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

MNTA - Manganese-binding lipoprotein MntA

UniProt:	O34385	Sequences: MRQGLMAAVLFATFALTGCGTDSAGKSADQQLQVTATTSQIADAAENIGGKHVKVTSLMGPGVDPHLYKASQGDTKKLMSADVVLYSGLHLEGKMEDVLQKIGEQKQSAAVAEAIPKNKLIPAGEGKTFDPHVWFSIPLWIYAVDEIEAQFSKAMPQHADAFRKNAKEYKEDLQYLDKWSRKEIAHIPEKSRVLVTAHDAFAYFGNEYGFKVKGLQGLSTDSDYGLRDVQELVDLLTEKQIKAVFVESSVSEKSINAVVEGAKEKGHTVTIGGQLYSDAMGEKGTKEGTYEGMFRHNINTITKALK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	306 (285)
Sequences:	5999 (4815)
Seq/√Len:	285.2

ECOLI - ZNUA
BACSU - MNTA ZNUA
HALSA - Q9HHR6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
141_I	174_Q	4.129	1.00
155_M	162_F	3.877	1.00
52_H	158_H	3.790	1.00
49_G	53_V	3.751	1.00
52_H	161_A	3.697	1.00
148_E	166_A	3.467	1.00
179_W	295_R	3.381	1.00
136_S	207_E	3.363	1.00
177_D	208_Y	3.208	1.00
145_D	170_K	3.181	1.00
159_A	163_R	2.876	1.00
155_M	158_H	2.610	1.00
152_S	163_R	2.598	1.00
47_N	172_D	2.564	1.00
158_H	162_F	2.553	1.00
141_I	170_K	2.549	1.00
148_E	152_S	2.532	1.00
33_Q	54_K	2.522	1.00
45_A	85_L	2.505	1.00
144_V	166_A	2.400	1.00
252_E	256_N	2.387	1.00
42_A	57_S	2.150	1.00
183_E	302_T	2.108	1.00
44_A	140_W	2.091	1.00
152_S	159_A	2.054	1.00
148_E	163_R	2.037	1.00
158_H	161_A	1.992	1.00
114_A	146_E	1.968	1.00
193_V	211_K	1.953	1.00
56_T	77_K	1.937	1.00
166_A	170_K	1.913	1.00
45_A	151_F	1.904	1.00
45_A	147_I	1.903	1.00
35_T	81_A	1.899	1.00
177_D	181_R	1.884	1.00
161_A	165_N	1.879	1.00
42_A	46_E	1.850	1.00
236_L	265_K	1.838	1.00
180_S	298_I	1.810	1.00
234_D	238_E	1.755	1.00
31_Q	54_K	1.754	1.00
288_G	292_G	1.745	1.00
235_L	239_K	1.735	1.00
110_A	113_E	1.700	1.00
144_V	169_Y	1.655	1.00
138_P	207_E	1.651	1.00
179_W	299_N	1.609	1.00
150_Q	153_K	1.594	1.00
160_D	164_K	1.588	1.00
195_V	236_L	1.582	1.00
289_T	292_G	1.564	1.00
150_Q	154_A	1.562	1.00
168_E	172_D	1.560	1.00
85_L	111_V	1.557	1.00
44_A	169_Y	1.554	1.00
83_V	150_Q	1.539	1.00
230_Q	234_D	1.522	1.00
74_D	77_K	1.518	1.00
172_D	291_E	1.511	1.00
49_G	151_F	1.509	1.00
52_H	155_M	1.480	1.00
164_K	168_E	1.478	1.00
139_L	142_Y	1.461	1.00
299_N	303_K	1.457	1.00
179_W	183_E	1.440	1.00
33_Q	56_T	1.425	1.00
83_V	154_A	1.417	1.00
33_Q	82_D	1.414	1.00
43_D	47_N	1.408	1.00
48_I	166_A	1.393	1.00
193_V	239_K	1.387	1.00
138_P	177_D	1.376	1.00
204_F	298_I	1.369	1.00
245_F	304_A	1.363	1.00
183_E	299_N	1.360	1.00
142_Y	146_E	1.354	1.00
167_K	171_E	1.346	1.00
256_N	263_K	1.337	1.00
170_K	174_Q	1.329	1.00
163_R	167_K	1.325	1.00
52_H	165_N	1.322	1.00
180_S	204_F	1.318	1.00
111_V	143_A	1.317	1.00
107_Q	153_K	1.312	1.00
178_K	182_K	1.309	1.00
34_V	151_F	1.307	1.00
133_V	143_A	1.297	1.00
73_G	76_K	1.292	1.00
172_D	295_R	1.289	1.00
32_L	154_A	1.286	1.00
145_D	148_E	1.274	1.00
36_A	42_A	1.268	1.00
175_Y	179_W	1.263	1.00
167_K	170_K	1.257	1.00
181_R	185_A	1.256	1.00
174_Q	178_K	1.242	1.00
47_N	169_Y	1.233	1.00
76_K	80_S	1.228	1.00
85_L	109_A	1.224	1.00
228_D	231_E	1.210	1.00
171_E	175_Y	1.209	1.00
86_Y	95_M	1.207	1.00
48_I	144_V	1.204	1.00
44_A	144_V	1.204	1.00
180_S	294_F	1.203	1.00
86_Y	110_A	1.194	1.00
124_G	127_K	1.186	1.00
149_A	152_S	1.183	1.00
41_I	111_V	1.170	1.00
296_H	300_T	1.160	1.00
160_D	163_R	1.151	1.00
236_L	267_H	1.148	1.00
47_N	291_E	1.145	1.00
171_E	174_Q	1.124	1.00
107_Q	154_A	1.122	1.00
34_V	53_V	1.121	1.00
205_G	210_F	1.119	1.00
70_A	94_K	1.117	1.00
136_S	139_L	1.116	1.00
50_G	161_A	1.116	1.00
233_V	258_V	1.115	1.00
161_A	164_K	1.114	1.00
68_Y	74_D	1.112	1.00
232_L	258_V	1.102	1.00
295_R	299_N	1.101	1.00
146_E	150_Q	1.091	1.00
66_H	132_H	1.088	1.00
145_D	149_A	1.083	1.00
109_A	150_Q	1.069	1.00
115_I	139_L	1.060	1.00
34_V	83_V	1.055	1.00
164_K	167_K	1.053	1.00
142_Y	145_D	1.047	1.00
165_N	168_E	1.047	1.00
85_L	147_I	1.046	1.00
224_Y	254_S	1.043	1.00
15_A	18_G	1.042	1.00
213_K	235_L	1.041	1.00
36_A	57_S	1.038	1.00
145_D	166_A	1.035	1.00
138_P	141_I	1.017	1.00
130_D	202_A	1.017	1.00
172_D	175_Y	1.011	1.00
43_D	169_Y	1.010	1.00
215_L	218_L	1.005	1.00
243_A	270_T	1.003	1.00
187_I	192_R	0.999	1.00
32_L	49_G	0.999	1.00
299_N	302_T	0.994	1.00
12_A	15_A	0.983	1.00
168_E	171_E	0.981	1.00
193_V	213_K	0.981	1.00
32_L	53_V	0.977	1.00
44_A	147_I	0.971	1.00
246_V	269_V	0.966	1.00
184_I	298_I	0.966	1.00
296_H	299_N	0.960	1.00
48_I	162_F	0.949	1.00
35_T	56_T	0.948	1.00
177_D	207_E	0.947	1.00
288_G	296_H	0.942	1.00
139_L	206_N	0.940	1.00
169_Y	173_L	0.934	1.00
107_Q	150_Q	0.930	1.00
201_F	272_G	0.928	1.00
233_V	237_T	0.924	1.00
87_S	143_A	0.921	1.00
35_T	58_L	0.920	1.00
137_I	173_L	0.919	1.00
199_D	214_G	0.917	1.00
52_H	162_F	0.914	1.00
139_L	143_A	0.913	1.00
11_F	14_F	0.906	1.00
140_W	294_F	0.900	1.00
123_A	126_G	0.897	1.00
36_A	45_A	0.895	1.00
137_I	207_E	0.887	1.00
181_R	207_E	0.886	1.00
141_I	145_D	0.883	1.00
35_T	77_K	0.876	1.00
64_D	67_L	0.874	1.00
194_L	205_G	0.870	1.00
194_L	212_V	0.868	1.00
144_V	170_K	0.864	1.00
147_I	151_F	0.863	1.00
149_A	153_K	0.857	1.00
36_A	41_I	0.846	1.00
192_R	209_G	0.843	1.00
84_V	95_M	0.843	1.00
231_E	234_D	0.841	1.00
148_E	170_K	0.838	1.00
97_D	100_Q	0.835	1.00
86_Y	108_S	0.831	1.00
49_G	55_V	0.828	1.00
146_E	149_A	0.826	1.00
182_K	185_A	0.820	1.00
173_L	176_L	0.820	1.00
36_A	55_V	0.819	1.00
33_Q	80_S	0.816	1.00
149_A	163_R	0.815	1.00
10_L	13_T	0.801	0.99
112_A	133_V	0.796	0.99
245_F	272_G	0.795	0.99
32_L	82_D	0.793	0.99
43_D	46_E	0.790	0.99
117_K	120_L	0.790	0.99
85_L	150_Q	0.785	0.99
211_K	239_K	0.780	0.99
112_A	115_I	0.780	0.99
34_V	49_G	0.776	0.99
249_S	277_S	0.771	0.99
83_V	109_A	0.765	0.99
41_I	143_A	0.764	0.99
298_I	302_T	0.763	0.99
174_Q	177_D	0.757	0.99
44_A	143_A	0.756	0.99
233_V	264_E	0.754	0.99
138_P	181_R	0.751	0.99
234_D	237_T	0.750	0.99
122_P	125_E	0.748	0.99
196_T	201_F	0.748	0.99
246_V	271_I	0.747	0.99
48_I	165_N	0.745	0.99
47_N	289_T	0.745	0.99
19_C	22_D	0.742	0.99
47_N	165_N	0.739	0.99
179_W	302_T	0.736	0.99
109_A	146_E	0.736	0.99
191_S	242_K	0.736	0.99
117_K	126_G	0.734	0.99
16_L	19_C	0.730	0.99
231_E	235_L	0.728	0.99
270_T	300_T	0.728	0.99
163_R	166_A	0.726	0.99
64_D	220_T	0.726	0.99
144_V	148_E	0.724	0.99
137_I	294_F	0.724	0.99
227_R	230_Q	0.724	0.99
290_Y	294_F	0.724	0.99
186_H	302_T	0.723	0.99
194_L	301_I	0.721	0.99
82_D	154_A	0.720	0.99
111_V	146_E	0.720	0.99
253_K	256_N	0.718	0.99
50_G	168_E	0.716	0.99
49_G	52_H	0.716	0.99
179_W	182_K	0.716	0.99
84_V	99_L	0.715	0.99
225_G	228_D	0.713	0.99
152_S	166_A	0.712	0.99
120_L	125_E	0.707	0.99
243_A	304_A	0.705	0.99
121_I	124_G	0.703	0.99
73_G	77_K	0.703	0.99
60_G	63_V	0.702	0.99
10_L	14_F	0.701	0.99
145_D	167_K	0.700	0.98
205_G	212_V	0.699	0.98
179_W	298_I	0.699	0.98
244_V	267_H	0.694	0.98
117_K	124_G	0.685	0.98
249_S	273_G	0.685	0.98
35_T	78_L	0.684	0.98
183_E	186_H	0.679	0.98
75_T	98_V	0.675	0.98
246_V	255_I	0.675	0.98
196_T	199_D	0.674	0.98
184_I	210_F	0.673	0.98
93_G	96_E	0.671	0.98
41_I	87_S	0.669	0.98
34_V	45_A	0.666	0.98
217_G	220_T	0.666	0.98
42_A	55_V	0.665	0.98
156_P	159_A	0.664	0.98
197_A	246_V	0.662	0.98
262_A	269_V	0.662	0.98
45_A	49_G	0.661	0.98
125_E	128_T	0.661	0.98
183_E	187_I	0.660	0.98
117_K	122_P	0.659	0.98
121_I	125_E	0.658	0.98
140_W	143_A	0.657	0.98
117_K	125_E	0.657	0.98
99_L	108_S	0.656	0.98
115_I	142_Y	0.655	0.98
12_A	16_L	0.654	0.98
95_M	99_L	0.653	0.98
294_F	298_I	0.652	0.98
34_V	55_V	0.649	0.98
195_V	232_L	0.647	0.98
144_V	173_L	0.646	0.97
182_K	186_H	0.646	0.97
32_L	155_M	0.645	0.97
172_D	289_T	0.644	0.97
37_T	92_E	0.642	0.97
65_P	249_S	0.640	0.97
137_I	177_D	0.640	0.97
103_G	106_K	0.638	0.97
194_L	210_F	0.638	0.97
152_S	162_F	0.637	0.97
292_G	295_R	0.636	0.97
78_L	98_V	0.635	0.97
133_V	139_L	0.635	0.97
173_L	290_Y	0.634	0.97
13_T	16_L	0.633	0.97
255_I	262_A	0.633	0.97
119_K	122_P	0.631	0.97
117_K	123_A	0.623	0.97
278_D	281_G	0.623	0.97
281_G	292_G	0.622	0.97
53_V	151_F	0.620	0.97
120_L	124_G	0.620	0.97
184_I	187_I	0.616	0.97
94_K	98_V	0.615	0.97
46_E	55_V	0.614	0.97
89_L	112_A	0.613	0.97
32_L	151_F	0.611	0.96
148_E	162_F	0.610	0.96
37_T	86_Y	0.609	0.96
196_T	212_V	0.609	0.96
291_E	295_R	0.607	0.96
132_H	198_H	0.603	0.96
175_Y	178_K	0.603	0.96
141_I	148_E	0.602	0.96
8_A	14_F	0.600	0.96
48_I	148_E	0.599	0.96
41_I	85_L	0.598	0.96
181_R	209_G	0.596	0.96
198_H	247_E	0.596	0.96
108_S	112_A	0.593	0.96
109_A	147_I	0.593	0.96
58_L	78_L	0.591	0.96
38_T	91_L	0.588	0.96
89_L	131_P	0.586	0.96
183_E	298_I	0.586	0.96
186_H	191_S	0.586	0.96
71_S	74_D	0.584	0.95
72_Q	226_L	0.583	0.95
247_E	250_V	0.582	0.95
244_V	255_I	0.581	0.95
108_S	111_V	0.580	0.95
300_T	303_K	0.580	0.95
136_S	206_N	0.579	0.95
268_T	303_K	0.579	0.95
96_E	100_Q	0.578	0.95
140_W	147_I	0.577	0.95
119_K	124_G	0.577	0.95
202_A	206_N	0.575	0.95
48_I	152_S	0.574	0.95
87_S	91_L	0.573	0.95
29_D	54_K	0.573	0.95
120_L	123_A	0.572	0.95
180_S	184_I	0.572	0.95
115_I	146_E	0.571	0.95
169_Y	291_E	0.570	0.95
246_V	250_V	0.570	0.95
111_V	115_I	0.569	0.95
273_G	276_Y	0.568	0.95
204_F	208_Y	0.567	0.95
137_I	291_E	0.565	0.95
87_S	133_V	0.565	0.95
39_S	43_D	0.564	0.95
38_T	64_D	0.563	0.94
227_R	231_E	0.563	0.94
229_V	258_V	0.562	0.94
27_S	30_Q	0.561	0.94
9_V	13_T	0.561	0.94
213_K	232_L	0.561	0.94
262_A	268_T	0.559	0.94
197_A	250_V	0.559	0.94
178_K	181_R	0.556	0.94
47_N	144_V	0.554	0.94
141_I	173_L	0.548	0.94
187_I	302_T	0.547	0.94
176_L	294_F	0.546	0.94
130_D	198_H	0.546	0.94
243_A	267_H	0.545	0.93
291_E	294_F	0.543	0.93
28_A	31_Q	0.542	0.93
137_I	180_S	0.541	0.93
195_V	241_I	0.540	0.93
34_V	85_L	0.536	0.93
17_T	20_G	0.535	0.93
213_K	231_E	0.533	0.93
226_L	230_Q	0.532	0.93
211_K	281_G	0.531	0.93
217_G	228_D	0.530	0.93
204_F	301_I	0.530	0.93
186_H	190_K	0.530	0.93
199_D	212_V	0.529	0.92
204_F	210_F	0.528	0.92
106_K	240_Q	0.528	0.92
40_Q	43_D	0.528	0.92
176_L	291_E	0.527	0.92
58_L	226_L	0.527	0.92
51_K	161_A	0.526	0.92
25_G	28_A	0.526	0.92
43_D	289_T	0.526	0.92
48_I	169_Y	0.524	0.92
281_G	287_E	0.523	0.92
140_W	290_Y	0.522	0.92
169_Y	172_D	0.519	0.92
137_I	208_Y	0.518	0.92
62_G	250_V	0.518	0.92
66_H	198_H	0.517	0.92
199_D	202_A	0.517	0.92
195_V	235_L	0.517	0.92
255_I	269_V	0.515	0.91
233_V	257_A	0.515	0.91
200_A	247_E	0.515	0.91
78_L	102_I	0.513	0.91
252_E	255_I	0.513	0.91
99_L	104_E	0.513	0.91
13_T	17_T	0.511	0.91
143_A	147_I	0.509	0.91
63_V	67_L	0.509	0.91
59_M	65_P	0.508	0.91
86_Y	96_E	0.506	0.91
262_A	267_H	0.506	0.91
281_G	286_K	0.505	0.91
91_L	131_P	0.504	0.91
236_L	244_V	0.504	0.91
26_K	29_D	0.503	0.91
48_I	147_I	0.503	0.91
8_A	12_A	0.503	0.91
70_A	98_V	0.501	0.90
29_D	33_Q	0.501	0.90
212_V	215_L	0.500	0.90

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4xrvA	1	0.8464	100	0.081	Contact Map
4utoA	1	0.8791	100	0.087	Contact Map
1toaA	1	0.8922	100	0.112	Contact Map
2o1eA	1	0.8595	100	0.124	Contact Map
3ujpA	4	0.8824	100	0.129	Contact Map
4nnoA	1	0.8824	100	0.133	Contact Map
3cx3A	1	0.8497	100	0.134	Contact Map
4cl2A	1	0.8497	100	0.139	Contact Map
2prsA	1	0.8301	100	0.142	Contact Map
3mfqA	1	0.8889	100	0.148	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0096 seconds.