GREMLIN Database
YVZB - Putative flagellin YvzB
UniProt: O34366 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 160 (155)
Sequences: 3752 (2668)
Seq/√Len: 214.3

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
116_E120_R4.6141.00
16_E21_K4.2111.00
7_E10_G3.9241.00
27_E31_F2.9681.00
78_D82_N2.5571.00
87_Q90_K2.5241.00
10_G14_R2.4331.00
49_S54_A2.2401.00
32_T44_T2.1941.00
131_F135_N2.1421.00
51_S54_A2.0991.00
12_S51_S2.0551.00
66_A69_P2.0341.00
16_E41_Q2.0311.00
3_A6_E2.0211.00
142_Q154_N2.0101.00
9_D52_S1.9941.00
128_M131_F1.9711.00
124_M128_M1.9131.00
5_I9_D1.8311.00
32_T42_Q1.8121.00
103_N106_G1.7091.00
16_E38_N1.6771.00
61_N69_P1.6281.00
2_D5_I1.6131.00
16_E19_G1.6091.00
5_I52_S1.5551.00
73_Q77_I1.5501.00
20_K31_F1.5251.00
63_T69_P1.5141.00
66_A70_F1.5051.00
75_E79_T1.5021.00
35_I43_L1.4971.00
108_S112_L1.4831.00
109_S113_T1.4691.00
7_E97_R1.4591.00
72_T76_S1.4561.00
130_E134_N1.4441.00
70_F73_Q1.4311.00
3_A94_V1.4191.00
53_T58_N1.4171.00
150_Q153_Q1.3951.00
39_A75_E1.3671.00
2_D6_E1.3591.00
67_N71_D1.3521.00
12_S23_L1.3451.00
13_N24_D1.3411.00
79_T83_N1.3381.00
33_F45_V1.3171.00
122_V127_E1.2801.00
47_I91_L1.2741.00
79_T82_N1.2621.00
128_M132_T1.2461.00
21_K24_D1.2261.00
81_I85_S1.1991.00
106_G109_S1.1961.00
5_I57_V1.1841.00
52_S57_V1.1781.00
124_M155_V1.1711.00
32_T67_N1.1601.00
126_K130_E1.1461.00
9_D13_N1.1271.00
8_V11_I1.1181.00
135_N142_Q1.1081.00
151_Q154_N1.1071.00
42_Q71_D1.1041.00
110_E114_A1.1021.00
127_E130_E1.1021.00
95_Q99_E1.0931.00
36_G41_Q1.0851.00
132_T145_L1.0801.00
130_E133_K1.0801.00
40_G71_D1.0671.00
38_N41_Q1.0661.00
60_L73_Q1.0411.00
131_F138_S1.0391.00
90_K94_V1.0381.00
48_D87_Q1.0331.00
9_D12_S1.0211.00
72_T75_E1.0201.00
129_S151_Q1.0201.00
86_N90_K1.0071.00
33_F98_L1.0051.00
37_A41_Q0.9961.00
14_R41_Q0.9941.00
16_E20_K0.9781.00
51_S55_L0.9761.00
50_M87_Q0.9761.00
128_M144_M0.9621.00
30_G44_T0.9561.00
117_S121_D0.9411.00
110_E120_R0.9370.99
76_S79_T0.9290.99
31_F47_I0.9280.99
68_T72_T0.9280.99
149_N153_Q0.9240.99
143_A157_Q0.9200.99
143_A147_Q0.9200.99
69_P73_Q0.9140.99
131_F141_S0.8960.99
138_S141_S0.8920.99
136_I153_Q0.8910.99
34_Q71_D0.8870.99
55_L83_N0.8830.99
136_I154_N0.8790.99
133_K137_P0.8410.99
75_E78_D0.8360.99
135_N141_S0.8210.99
62_V73_Q0.8110.99
104_N107_A0.8050.98
113_T116_E0.8020.98
60_L63_T0.7990.98
55_L80_A0.7940.98
124_M131_F0.7920.98
101_T105_L0.7890.98
107_A131_F0.7770.98
148_A152_P0.7750.98
66_A73_Q0.7730.98
114_A118_R0.7680.98
153_Q157_Q0.7650.98
12_S55_L0.7630.98
43_L94_V0.7600.98
95_Q111_N0.7590.98
5_I60_L0.7590.98
126_K129_S0.7560.98
132_T153_Q0.7530.98
147_Q152_P0.7510.98
56_G80_A0.7490.98
3_A90_K0.7390.97
99_E118_R0.7230.97
141_S157_Q0.7210.97
18_N22_L0.7200.97
83_N86_N0.7200.97
98_L122_V0.7170.97
12_S50_M0.7130.97
24_D49_S0.7110.97
129_S141_S0.7110.97
135_N151_Q0.7100.97
68_T79_T0.7020.96
143_A148_A0.7010.96
132_T154_N0.7000.96
100_H117_S0.6980.96
48_D83_N0.6950.96
89_A128_M0.6940.96
8_V14_R0.6910.96
9_D58_N0.6890.96
69_P76_S0.6890.96
13_N51_S0.6880.96
2_D69_P0.6800.96
49_S53_T0.6740.95
27_E47_I0.6690.95
47_I87_Q0.6610.95
107_A111_N0.6600.95
39_A71_D0.6590.95
45_V94_V0.6570.95
91_L95_Q0.6480.94
61_N66_A0.6480.94
142_Q155_V0.6430.94
31_F45_V0.6420.94
71_D74_L0.6380.94
70_F74_L0.6370.94
82_N86_N0.6360.94
38_N112_L0.6290.93
34_Q37_A0.6270.93
132_T152_P0.6260.93
116_E129_S0.6260.93
124_M135_N0.6260.93
11_I15_T0.6220.93
137_P141_S0.6210.93
53_T83_N0.6210.93
73_Q76_S0.6150.93
102_I106_G0.6150.93
120_R142_Q0.6140.93
59_A63_T0.6080.92
49_S57_V0.6070.92
154_N157_Q0.6030.92
52_S55_L0.6030.92
124_M129_S0.6020.92
22_L25_G0.6010.92
57_V60_L0.5990.92
116_E124_M0.5970.91
12_S54_A0.5910.91
60_L69_P0.5830.91
100_H103_N0.5820.90
6_E9_D0.5800.90
58_N61_N0.5750.90
99_E103_N0.5750.90
96_N100_H0.5740.90
128_M155_V0.5730.90
30_G46_N0.5710.90
107_A110_E0.5690.89
88_R123_D0.5680.89
28_T53_T0.5640.89
38_N78_D0.5640.89
72_T79_T0.5630.89
46_N49_S0.5620.89
135_N143_A0.5560.88
102_I105_L0.5560.88
4_L7_E0.5550.88
132_T141_S0.5550.88
5_I12_S0.5530.88
34_Q38_N0.5530.88
30_G47_I0.5510.88
41_Q71_D0.5510.88
88_R96_N0.5480.88
84_V112_L0.5470.88
59_A69_P0.5450.87
21_K41_Q0.5440.87
22_L47_I0.5430.87
88_R110_E0.5420.87
100_H107_A0.5390.87
34_Q41_Q0.5370.87
43_L97_R0.5320.86
96_N123_D0.5300.86
100_H104_N0.5290.86
106_G141_S0.5270.86
153_Q156_L0.5270.86
68_T71_D0.5270.86
10_G16_E0.5260.85
132_T140_A0.5260.85
7_E14_R0.5210.85
132_T149_N0.5170.84
152_P157_Q0.5170.84
85_S112_L0.5140.84
151_Q157_Q0.5120.84
101_T115_A0.5110.84
101_T110_E0.5090.84
58_N68_T0.5070.83
50_M55_L0.5060.83
59_A68_T0.5050.83
144_M147_Q0.5020.83
8_V57_V0.5000.82
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
1ucuA 1 0.9875 100 0.038 Contact Map
4nx9A 1 0.6562 99.9 0.458 Contact Map
3k8wA 1 0.7063 99.9 0.481 Contact Map
3v47C 1 0.6813 99.7 0.579 Contact Map
2d4xA 1 0.65 99.7 0.587 Contact Map
4cfiA 1 0.5938 99.7 0.591 Contact Map
3pwxA 2 0.7438 99.6 0.596 Contact Map
1oryB 2 0.25 99.6 0.604 Contact Map
3k1iC 1 0.4688 99.6 0.614 Contact Map
1io1A 1 0.7125 99.5 0.638 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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