YVZB - BACSU - GREMLIN Contacts

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YVZB - Putative flagellin YvzB

UniProt:	O34366	Sequences: MDALIEEVDGISNRTEFNGKKLLDGTETDGFTFQIGANAGQQLTVNIDSMSSTALGVNALNVTDFANTPFDTQLESIDTAINNVSNQRAKLGAVQNRLEHTINNLGASSENLTAAESRIRDVDMAKEMSEFTKNNIPSQASQAMLAQANQQPQNVLQLLR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	160 (155)
Sequences:	3752 (2668)
Seq/√Len:	214.3

ECOLI - FLIC
BACSU - YVZB FLA

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
116_E	120_R	4.614	1.00
16_E	21_K	4.211	1.00
7_E	10_G	3.924	1.00
27_E	31_F	2.968	1.00
78_D	82_N	2.557	1.00
87_Q	90_K	2.524	1.00
10_G	14_R	2.433	1.00
49_S	54_A	2.240	1.00
32_T	44_T	2.194	1.00
131_F	135_N	2.142	1.00
51_S	54_A	2.099	1.00
12_S	51_S	2.055	1.00
66_A	69_P	2.034	1.00
16_E	41_Q	2.031	1.00
3_A	6_E	2.021	1.00
142_Q	154_N	2.010	1.00
9_D	52_S	1.994	1.00
128_M	131_F	1.971	1.00
124_M	128_M	1.913	1.00
5_I	9_D	1.831	1.00
32_T	42_Q	1.812	1.00
103_N	106_G	1.709	1.00
16_E	38_N	1.677	1.00
61_N	69_P	1.628	1.00
2_D	5_I	1.613	1.00
16_E	19_G	1.609	1.00
5_I	52_S	1.555	1.00
73_Q	77_I	1.550	1.00
20_K	31_F	1.525	1.00
63_T	69_P	1.514	1.00
66_A	70_F	1.505	1.00
75_E	79_T	1.502	1.00
35_I	43_L	1.497	1.00
108_S	112_L	1.483	1.00
109_S	113_T	1.469	1.00
7_E	97_R	1.459	1.00
72_T	76_S	1.456	1.00
130_E	134_N	1.444	1.00
70_F	73_Q	1.431	1.00
3_A	94_V	1.419	1.00
53_T	58_N	1.417	1.00
150_Q	153_Q	1.395	1.00
39_A	75_E	1.367	1.00
2_D	6_E	1.359	1.00
67_N	71_D	1.352	1.00
12_S	23_L	1.345	1.00
13_N	24_D	1.341	1.00
79_T	83_N	1.338	1.00
33_F	45_V	1.317	1.00
122_V	127_E	1.280	1.00
47_I	91_L	1.274	1.00
79_T	82_N	1.262	1.00
128_M	132_T	1.246	1.00
21_K	24_D	1.226	1.00
81_I	85_S	1.199	1.00
106_G	109_S	1.196	1.00
5_I	57_V	1.184	1.00
52_S	57_V	1.178	1.00
124_M	155_V	1.171	1.00
32_T	67_N	1.160	1.00
126_K	130_E	1.146	1.00
9_D	13_N	1.127	1.00
8_V	11_I	1.118	1.00
135_N	142_Q	1.108	1.00
151_Q	154_N	1.107	1.00
42_Q	71_D	1.104	1.00
110_E	114_A	1.102	1.00
127_E	130_E	1.102	1.00
95_Q	99_E	1.093	1.00
36_G	41_Q	1.085	1.00
132_T	145_L	1.080	1.00
130_E	133_K	1.080	1.00
40_G	71_D	1.067	1.00
38_N	41_Q	1.066	1.00
60_L	73_Q	1.041	1.00
131_F	138_S	1.039	1.00
90_K	94_V	1.038	1.00
48_D	87_Q	1.033	1.00
9_D	12_S	1.021	1.00
72_T	75_E	1.020	1.00
129_S	151_Q	1.020	1.00
86_N	90_K	1.007	1.00
33_F	98_L	1.005	1.00
37_A	41_Q	0.996	1.00
14_R	41_Q	0.994	1.00
16_E	20_K	0.978	1.00
51_S	55_L	0.976	1.00
50_M	87_Q	0.976	1.00
128_M	144_M	0.962	1.00
30_G	44_T	0.956	1.00
117_S	121_D	0.941	1.00
110_E	120_R	0.937	0.99
76_S	79_T	0.929	0.99
31_F	47_I	0.928	0.99
68_T	72_T	0.928	0.99
149_N	153_Q	0.924	0.99
143_A	157_Q	0.920	0.99
143_A	147_Q	0.920	0.99
69_P	73_Q	0.914	0.99
131_F	141_S	0.896	0.99
138_S	141_S	0.892	0.99
136_I	153_Q	0.891	0.99
34_Q	71_D	0.887	0.99
55_L	83_N	0.883	0.99
136_I	154_N	0.879	0.99
133_K	137_P	0.841	0.99
75_E	78_D	0.836	0.99
135_N	141_S	0.821	0.99
62_V	73_Q	0.811	0.99
104_N	107_A	0.805	0.98
113_T	116_E	0.802	0.98
60_L	63_T	0.799	0.98
55_L	80_A	0.794	0.98
124_M	131_F	0.792	0.98
101_T	105_L	0.789	0.98
107_A	131_F	0.777	0.98
148_A	152_P	0.775	0.98
66_A	73_Q	0.773	0.98
114_A	118_R	0.768	0.98
153_Q	157_Q	0.765	0.98
12_S	55_L	0.763	0.98
43_L	94_V	0.760	0.98
95_Q	111_N	0.759	0.98
5_I	60_L	0.759	0.98
126_K	129_S	0.756	0.98
132_T	153_Q	0.753	0.98
147_Q	152_P	0.751	0.98
56_G	80_A	0.749	0.98
3_A	90_K	0.739	0.97
99_E	118_R	0.723	0.97
141_S	157_Q	0.721	0.97
18_N	22_L	0.720	0.97
83_N	86_N	0.720	0.97
98_L	122_V	0.717	0.97
12_S	50_M	0.713	0.97
24_D	49_S	0.711	0.97
129_S	141_S	0.711	0.97
135_N	151_Q	0.710	0.97
68_T	79_T	0.702	0.96
143_A	148_A	0.701	0.96
132_T	154_N	0.700	0.96
100_H	117_S	0.698	0.96
48_D	83_N	0.695	0.96
89_A	128_M	0.694	0.96
8_V	14_R	0.691	0.96
9_D	58_N	0.689	0.96
69_P	76_S	0.689	0.96
13_N	51_S	0.688	0.96
2_D	69_P	0.680	0.96
49_S	53_T	0.674	0.95
27_E	47_I	0.669	0.95
47_I	87_Q	0.661	0.95
107_A	111_N	0.660	0.95
39_A	71_D	0.659	0.95
45_V	94_V	0.657	0.95
91_L	95_Q	0.648	0.94
61_N	66_A	0.648	0.94
142_Q	155_V	0.643	0.94
31_F	45_V	0.642	0.94
71_D	74_L	0.638	0.94
70_F	74_L	0.637	0.94
82_N	86_N	0.636	0.94
38_N	112_L	0.629	0.93
34_Q	37_A	0.627	0.93
132_T	152_P	0.626	0.93
116_E	129_S	0.626	0.93
124_M	135_N	0.626	0.93
11_I	15_T	0.622	0.93
137_P	141_S	0.621	0.93
53_T	83_N	0.621	0.93
73_Q	76_S	0.615	0.93
102_I	106_G	0.615	0.93
120_R	142_Q	0.614	0.93
59_A	63_T	0.608	0.92
49_S	57_V	0.607	0.92
154_N	157_Q	0.603	0.92
52_S	55_L	0.603	0.92
124_M	129_S	0.602	0.92
22_L	25_G	0.601	0.92
57_V	60_L	0.599	0.92
116_E	124_M	0.597	0.91
12_S	54_A	0.591	0.91
60_L	69_P	0.583	0.91
100_H	103_N	0.582	0.90
6_E	9_D	0.580	0.90
58_N	61_N	0.575	0.90
99_E	103_N	0.575	0.90
96_N	100_H	0.574	0.90
128_M	155_V	0.573	0.90
30_G	46_N	0.571	0.90
107_A	110_E	0.569	0.89
88_R	123_D	0.568	0.89
28_T	53_T	0.564	0.89
38_N	78_D	0.564	0.89
72_T	79_T	0.563	0.89
46_N	49_S	0.562	0.89
135_N	143_A	0.556	0.88
102_I	105_L	0.556	0.88
4_L	7_E	0.555	0.88
132_T	141_S	0.555	0.88
5_I	12_S	0.553	0.88
34_Q	38_N	0.553	0.88
30_G	47_I	0.551	0.88
41_Q	71_D	0.551	0.88
88_R	96_N	0.548	0.88
84_V	112_L	0.547	0.88
59_A	69_P	0.545	0.87
21_K	41_Q	0.544	0.87
22_L	47_I	0.543	0.87
88_R	110_E	0.542	0.87
100_H	107_A	0.539	0.87
34_Q	41_Q	0.537	0.87
43_L	97_R	0.532	0.86
96_N	123_D	0.530	0.86
100_H	104_N	0.529	0.86
106_G	141_S	0.527	0.86
153_Q	156_L	0.527	0.86
68_T	71_D	0.527	0.86
10_G	16_E	0.526	0.85
132_T	140_A	0.526	0.85
7_E	14_R	0.521	0.85
132_T	149_N	0.517	0.84
152_P	157_Q	0.517	0.84
85_S	112_L	0.514	0.84
151_Q	157_Q	0.512	0.84
101_T	115_A	0.511	0.84
101_T	110_E	0.509	0.84
58_N	68_T	0.507	0.83
50_M	55_L	0.506	0.83
59_A	68_T	0.505	0.83
144_M	147_Q	0.502	0.83
8_V	57_V	0.500	0.82

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1ucuA	1	0.9875	100	0.038	Contact Map
4nx9A	1	0.6562	99.9	0.458	Contact Map
3k8wA	1	0.7063	99.9	0.481	Contact Map
3v47C	1	0.6813	99.7	0.579	Contact Map
2d4xA	1	0.65	99.7	0.587	Contact Map
4cfiA	1	0.5938	99.7	0.591	Contact Map
3pwxA	2	0.7438	99.6	0.596	Contact Map
1oryB	2	0.25	99.6	0.604	Contact Map
3k1iC	1	0.4688	99.6	0.614	Contact Map
1io1A	1	0.7125	99.5	0.638	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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