GREMLIN Database
YOQJ - Uncharacterized SPBc2 prophage-derived protein YoqJ
UniProt: O34359 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 171 (144)
Sequences: 609 (492)
Seq/√Len: 41.0

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
37_T129_V2.9231.00
45_V57_N2.8801.00
42_C81_M2.7651.00
26_K29_F2.6191.00
49_K86_D2.5791.00
144_A153_L2.5591.00
66_Q78_Y2.4751.00
63_F112_M2.3561.00
42_C57_N2.2521.00
65_E68_K2.2411.00
20_L127_V2.1911.00
92_E114_K2.1480.99
61_T90_N2.0220.99
35_L70_W2.0200.99
29_F45_V1.9920.99
33_G59_I1.9760.99
60_A119_M1.9740.99
14_L18_E1.9730.99
135_S139_N1.9490.99
126_I144_A1.9380.99
123_S151_H1.9370.99
14_L44_C1.9240.99
71_S74_Q1.8860.98
20_L154_W1.8180.98
105_G108_S1.8020.98
134_K138_R1.7930.98
59_I82_L1.7880.98
75_K79_K1.7760.98
29_F55_I1.7510.98
10_K44_C1.7320.97
17_I29_F1.6920.97
72_A75_K1.6850.97
118_Y122_H1.6450.96
138_R142_N1.5700.95
39_Q81_M1.5560.95
30_I60_A1.5330.95
32_G115_R1.5090.94
115_R136_G1.4900.94
14_L47_I1.4350.92
10_K43_W1.4220.92
31_T42_C1.3890.91
16_V154_W1.3530.90
32_G119_M1.3170.89
30_I123_S1.3160.89
60_A91_V1.3010.88
67_D78_Y1.2900.88
64_K105_G1.2870.87
43_W77_W1.2750.87
13_L41_A1.2560.86
61_T78_Y1.2250.85
66_Q116_N1.2240.85
9_L12_K1.2010.84
18_E48_L1.1970.83
16_V127_V1.1880.83
38_D115_R1.1800.82
6_M77_W1.1670.82
117_E121_D1.1560.81
46_H57_N1.1330.80
46_H49_K1.1010.78
59_I85_A1.1000.78
58_I89_I1.0910.77
35_L74_Q1.0880.77
116_N140_C1.0780.76
107_F111_K1.0760.76
120_I143_Y1.0610.75
31_T59_I1.0580.75
30_I122_H1.0500.74
126_I140_C1.0350.73
28_R58_I1.0310.73
32_G136_G1.0300.73
116_N136_G1.0290.73
118_Y130_Y1.0260.73
82_L116_N1.0200.72
26_K125_A1.0050.71
30_I119_M1.0020.71
28_R118_Y0.9970.70
124_E151_H0.9940.70
121_D147_T0.9840.69
21_I24_E0.9760.69
115_R140_C0.9690.68
119_M122_H0.9400.66
18_E51_K0.9390.66
61_T88_I0.9300.65
30_I124_E0.9220.64
42_C85_A0.9190.64
119_M140_C0.9160.64
21_I27_Y0.9100.63
66_Q136_G0.9080.63
62_P85_A0.9010.63
128_A141_L0.9010.63
78_Y82_L0.8990.62
57_N85_A0.8920.62
112_M138_R0.8880.61
141_L145_K0.8850.61
8_K11_D0.8840.61
74_Q158_P0.8730.60
80_R84_V0.8640.59
21_I54_H0.8610.59
112_M140_C0.8400.57
18_E21_I0.8340.57
28_R56_K0.8310.56
32_G62_P0.8240.56
32_G38_D0.8210.55
70_W75_K0.8130.55
52_H55_I0.8090.54
67_D75_K0.7980.53
117_E143_Y0.7960.53
33_G41_A0.7920.53
21_I55_I0.7880.52
18_E23_K0.7810.52
70_W112_M0.7690.51
48_L107_F0.7590.50
116_N143_Y0.7590.50
140_C144_A0.7570.49
53_P134_K0.7540.49
42_C59_I0.7530.49
71_S158_P0.7490.49
34_A115_R0.7410.48
80_R83_N0.7410.48
67_D115_R0.7340.47
35_L71_S0.7310.47
28_R87_E0.7290.47
145_K149_L0.7290.47
129_V156_L0.7280.47
13_L83_N0.7130.45
21_I145_K0.7110.45
126_I130_Y0.7100.45
45_V85_A0.7100.45
31_T39_Q0.7070.45
30_I58_I0.7060.45
86_D107_F0.7050.45
37_T155_R0.7010.44
42_C45_V0.6980.44
15_A54_H0.6980.44
21_I48_L0.6920.43
65_E106_E0.6880.43
141_L155_R0.6870.43
27_Y56_K0.6860.43
128_A132_G0.6790.42
135_S138_R0.6710.42
45_V56_K0.6700.41
105_G127_V0.6670.41
60_A118_Y0.6640.41
46_H82_L0.6550.40
23_K55_I0.6500.40
34_A136_G0.6460.39
132_G155_R0.6430.39
29_F41_A0.6400.39
60_A140_C0.6380.39
21_I26_K0.6370.39
76_M80_R0.6360.38
56_K75_K0.6340.38
42_C46_H0.6310.38
30_I127_V0.6280.38
76_M149_L0.6210.37
92_E105_G0.6200.37
79_K123_S0.6190.37
112_M116_N0.6170.37
34_A137_T0.6160.37
18_E52_H0.6150.37
142_N146_K0.6070.36
43_W81_M0.6060.36
39_Q112_M0.6020.35
25_N88_I0.6010.35
14_L48_L0.6000.35
16_V19_E0.5970.35
38_D58_I0.5960.35
125_A154_W0.5910.35
46_H84_V0.5870.34
84_V149_L0.5810.34
46_H81_M0.5800.34
11_D15_A0.5790.34
157_H160_F0.5770.33
6_M149_L0.5750.33
17_I45_V0.5730.33
10_K40_A0.5720.33
50_K150_G0.5690.33
92_E123_S0.5670.33
142_N145_K0.5640.32
6_M10_K0.5640.32
123_S126_I0.5610.32
126_I153_L0.5570.32
57_N81_M0.5570.32
66_Q115_R0.5570.32
14_L51_K0.5560.32
65_E113_Q0.5550.32
13_L152_Q0.5530.31
39_Q116_N0.5510.31
9_L156_L0.5510.31
115_R119_M0.5480.31
37_T158_P0.5450.31
85_A135_S0.5450.31
58_I87_E0.5430.31
39_Q77_W0.5430.31
116_N159_D0.5410.30
5_T140_C0.5390.30
91_V105_G0.5390.30
49_K116_N0.5340.30
81_M85_A0.5340.30
121_D143_Y0.5270.29
21_I113_Q0.5260.29
33_G132_G0.5240.29
55_I83_N0.5220.29
49_K84_V0.5210.29
137_T140_C0.5210.29
35_L118_Y0.5190.29
92_E118_Y0.5180.29
109_P113_Q0.5180.29
14_L109_P0.5170.29
11_D14_L0.5160.29
24_E83_N0.5120.28
45_V55_I0.5100.28
60_A143_Y0.5100.28
43_W46_H0.5100.28
44_C50_K0.5030.28
28_R111_K0.5000.27
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2nx2A 1 0.8947 100 0.372 Contact Map
4ljrA 2 0.8304 99.7 0.702 Contact Map
3imkA 1 0.7018 99.7 0.705 Contact Map
3uqzA 2 0.8596 99.6 0.722 Contact Map
3majA 2 0.8538 99.4 0.756 Contact Map
1rcuA 3 0.7368 98.6 0.824 Contact Map
2iz6A 4 0.6959 98.2 0.839 Contact Map
3quaA 2 0.7719 97.9 0.853 Contact Map
1t35A 5 0.7544 97.6 0.863 Contact Map
3sbxA 2 0.7661 97.5 0.864 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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