UXUA - BACSU - GREMLIN Contacts

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UXUA - Mannonate dehydratase

UniProt:	O34346	Sequences: MNMTFRWYGRGNDTVTLEYVKQIPGVKGIVWALHQKPVGDVWEKEEIRAETEYIQSYGFHAEVVESVNVHEAIKLGNEERGRYIENYKQTIRNLAGFGVKVICYNFMPVFDWTRTDMFRPLEDGSTALFFEKAKVESLDPQELIRTVEEASDMTLPGWEPEKLARIKELFAAYRTVDEEKLWDNLSFFLQEILPVAEAYGVQMAIHPDDPPWPIFGLPRIITGEASYKKLRAISDSPSNCITLCTGSMGANPANDMVEIAKTYAGIAPFSHIRNVKIYENGDFIETSHLTKDGSINIQGVMEELHKQDYEGYVRPDHGRHLWGEQCRPGYGLYDRALGIMYLNGLWDAYEAMAKKEVGI	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	359 (347)
Sequences:	997 (613)
Seq/√Len:	32.9

ECOLI - UXUA
BACSU - UXUA

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
92_R	198_A	4.025	1.00
197_E	236_S	3.987	1.00
91_I	102_I	3.971	1.00
177_D	180_K	3.838	1.00
95_A	199_Y	3.764	1.00
91_I	201_V	3.540	1.00
185_L	205_I	3.443	1.00
67_V	90_T	3.425	1.00
44_K	97_F	3.293	1.00
228_K	262_T	3.293	1.00
35_Q	46_E	3.265	1.00
224_E	258_E	3.146	1.00
224_E	262_T	3.072	1.00
88_K	191_E	3.049	1.00
193_L	203_M	2.773	1.00
16_T	19_Y	2.762	1.00
4_T	28_G	2.740	1.00
103_C	242_T	2.668	1.00
270_S	304_L	2.560	1.00
186_S	190_Q	2.455	1.00
85_E	88_K	2.410	0.99
345_L	349_Y	2.371	0.99
245_T	300_V	2.366	0.99
190_Q	234_S	2.353	0.99
44_K	96_G	2.337	0.99
298_Q	345_L	2.312	0.99
52_E	56_S	2.283	0.99
171_A	174_R	2.271	0.99
2_N	62_E	2.269	0.99
70_H	83_Y	2.260	0.99
255_D	258_E	2.252	0.99
182_W	229_K	2.215	0.99
227_Y	248_M	2.147	0.99
257_V	299_G	2.132	0.99
287_S	292_D	2.094	0.98
51_T	55_Q	2.011	0.98
36_K	43_E	2.003	0.98
260_A	267_A	2.003	0.98
67_V	94_L	1.996	0.98
192_I	203_M	1.957	0.97
76_G	80_R	1.932	0.97
200_G	238_S	1.929	0.97
46_E	49_A	1.908	0.97
222_T	226_S	1.876	0.97
131_E	282_D	1.849	0.96
41_V	93_N	1.846	0.96
228_K	232_A	1.834	0.96
227_Y	241_I	1.831	0.96
47_I	94_L	1.827	0.96
195_V	198_A	1.798	0.96
240_C	268_P	1.788	0.96
221_I	230_L	1.784	0.96
345_L	348_A	1.780	0.96
186_S	233_I	1.777	0.96
193_L	236_S	1.773	0.95
130_F	212_W	1.771	0.95
44_K	48_R	1.754	0.95
258_E	262_T	1.752	0.95
295_I	300_V	1.716	0.95
260_A	264_A	1.703	0.94
92_R	199_Y	1.702	0.94
48_R	97_F	1.691	0.94
31_W	54_I	1.635	0.93
2_N	60_H	1.633	0.93
301_M	342_L	1.617	0.93
41_V	89_Q	1.607	0.92
261_K	306_K	1.598	0.92
227_Y	231_R	1.594	0.92
72_A	79_E	1.590	0.92
243_L	256_M	1.580	0.92
10_R	53_Y	1.569	0.91
224_E	263_Y	1.569	0.91
298_Q	348_A	1.549	0.91
264_A	307_Q	1.548	0.91
301_M	345_L	1.539	0.91
167_K	171_A	1.534	0.90
221_I	227_Y	1.524	0.90
223_G	251_N	1.516	0.90
81_G	191_E	1.505	0.90
261_K	299_G	1.503	0.90
92_R	195_V	1.492	0.89
79_E	82_R	1.447	0.88
278_Y	282_D	1.431	0.87
48_R	52_E	1.430	0.87
81_G	187_F	1.421	0.87
276_K	294_S	1.416	0.87
89_Q	92_R	1.415	0.86
178_E	213_P	1.401	0.86
211_P	250_A	1.396	0.86
305_H	349_Y	1.393	0.86
36_K	46_E	1.377	0.85
204_A	242_T	1.376	0.85
48_R	51_T	1.372	0.85
272_I	301_M	1.365	0.84
322_W	332_L	1.354	0.84
67_V	91_I	1.354	0.84
195_V	199_Y	1.349	0.84
80_R	187_F	1.348	0.84
257_V	261_K	1.342	0.83
123_D	337_L	1.340	0.83
179_E	229_K	1.330	0.83
102_I	201_V	1.327	0.83
250_A	275_V	1.325	0.83
95_A	201_V	1.324	0.83
261_K	303_E	1.321	0.82
89_Q	93_N	1.313	0.82
55_Q	60_H	1.306	0.82
31_W	61_A	1.304	0.82
120_P	126_T	1.298	0.81
276_K	292_D	1.297	0.81
298_Q	351_A	1.287	0.81
77_N	172_A	1.270	0.80
231_R	235_D	1.256	0.79
64_V	94_L	1.253	0.79
3_M	346_W	1.244	0.78
298_Q	349_Y	1.237	0.78
228_K	263_Y	1.237	0.78
47_I	93_N	1.236	0.78
243_L	259_I	1.231	0.78
303_E	306_K	1.229	0.77
140_P	143_L	1.226	0.77
232_A	235_D	1.223	0.77
289_L	343_N	1.221	0.77
30_V	63_V	1.214	0.77
224_E	228_K	1.209	0.76
141_Q	145_R	1.206	0.76
202_Q	238_S	1.188	0.75
152_D	327_R	1.173	0.74
333_Y	336_A	1.172	0.74
180_K	183_D	1.163	0.73
248_M	259_I	1.161	0.73
2_N	27_K	1.155	0.73
76_G	187_F	1.151	0.73
231_R	241_I	1.148	0.72
298_Q	302_E	1.145	0.72
241_I	263_Y	1.145	0.72
76_G	81_G	1.135	0.72
189_L	234_S	1.125	0.71
85_E	191_E	1.105	0.69
90_T	94_L	1.099	0.69
8_Y	128_L	1.094	0.69
23_I	332_L	1.094	0.69
35_Q	49_A	1.092	0.69
301_M	349_Y	1.085	0.68
142_E	146_T	1.081	0.68
182_W	226_S	1.079	0.68
223_G	226_S	1.079	0.68
258_E	263_Y	1.079	0.68
88_K	195_V	1.073	0.67
54_I	61_A	1.062	0.66
196_A	238_S	1.061	0.66
245_T	304_L	1.060	0.66
4_T	312_Y	1.054	0.66
223_G	253_A	1.052	0.66
125_S	321_L	1.046	0.65
186_S	229_K	1.039	0.65
347_D	351_A	1.035	0.64
5_F	26_V	1.031	0.64
88_K	92_R	1.030	0.64
193_L	234_S	1.026	0.64
26_V	339_I	1.026	0.64
205_I	221_I	1.013	0.63
78_E	81_G	1.009	0.62
305_H	346_W	1.005	0.62
131_E	134_K	0.998	0.61
49_A	53_Y	0.997	0.61
248_M	257_V	0.994	0.61
272_I	297_I	0.992	0.61
62_E	100_K	0.989	0.61
40_D	82_R	0.986	0.61
72_A	75_L	0.986	0.61
126_T	320_H	0.983	0.60
204_A	248_M	0.983	0.60
296_N	299_G	0.982	0.60
332_L	336_A	0.980	0.60
186_S	234_S	0.978	0.60
116_D	119_R	0.970	0.59
100_K	200_G	0.965	0.59
125_S	337_L	0.953	0.58
193_L	196_A	0.948	0.57
47_I	90_T	0.944	0.57
132_K	136_E	0.941	0.57
197_E	238_S	0.941	0.57
178_E	229_K	0.936	0.56
305_H	350_E	0.936	0.56
327_R	331_G	0.934	0.56
165_R	168_E	0.932	0.56
135_V	215_F	0.929	0.56
260_A	304_L	0.929	0.56
340_M	343_N	0.926	0.56
75_L	176_V	0.921	0.55
256_M	259_I	0.921	0.55
75_L	172_A	0.920	0.55
142_E	145_R	0.918	0.55
62_E	312_Y	0.916	0.55
71_E	75_L	0.912	0.55
320_H	331_G	0.912	0.55
47_I	67_V	0.909	0.54
23_I	336_A	0.907	0.54
320_H	326_C	0.904	0.54
116_D	131_E	0.903	0.54
101_V	202_Q	0.899	0.53
15_V	23_I	0.890	0.53
21_K	122_E	0.888	0.53
182_W	230_L	0.885	0.52
45_E	198_A	0.884	0.52
61_A	64_V	0.882	0.52
84_I	88_K	0.881	0.52
286_T	292_D	0.880	0.52
143_L	146_T	0.879	0.52
28_G	312_Y	0.877	0.52
30_V	269_F	0.873	0.51
245_T	249_G	0.865	0.51
264_A	303_E	0.865	0.51
5_F	23_I	0.861	0.50
101_V	312_Y	0.859	0.50
129_F	278_Y	0.858	0.50
32_A	38_V	0.846	0.49
18_E	57_Y	0.846	0.49
311_G	331_G	0.845	0.49
162_K	165_R	0.841	0.49
242_T	268_P	0.841	0.49
321_L	337_L	0.838	0.48
4_T	62_E	0.838	0.48
100_K	310_E	0.837	0.48
43_E	90_T	0.836	0.48
1_M	301_M	0.835	0.48
231_R	266_I	0.835	0.48
67_V	87_Y	0.831	0.48
204_A	308_D	0.829	0.48
103_C	269_F	0.827	0.47
256_M	277_I	0.827	0.47
235_D	266_I	0.825	0.47
132_K	281_G	0.822	0.47
289_L	292_D	0.821	0.47
38_V	159_E	0.821	0.47
50_E	61_A	0.820	0.47
103_C	204_A	0.819	0.47
260_A	303_E	0.816	0.47
88_K	192_I	0.814	0.46
226_S	230_L	0.810	0.46
256_M	264_A	0.809	0.46
71_E	173_Y	0.803	0.45
202_Q	268_P	0.800	0.45
265_G	307_Q	0.799	0.45
8_Y	235_D	0.792	0.45
236_S	266_I	0.789	0.44
34_H	50_E	0.783	0.44
261_K	307_Q	0.783	0.44
31_W	50_E	0.782	0.44
252_P	277_I	0.782	0.44
178_E	225_A	0.779	0.44
183_D	186_S	0.775	0.43
134_K	137_S	0.770	0.43
10_R	50_E	0.770	0.43
85_E	89_Q	0.769	0.43
15_V	332_L	0.768	0.43
276_K	286_T	0.767	0.43
229_K	233_I	0.765	0.42
152_D	159_E	0.763	0.42
228_K	258_E	0.762	0.42
234_S	266_I	0.762	0.42
72_A	83_Y	0.761	0.42
191_E	195_V	0.754	0.41
25_G	289_L	0.753	0.41
18_E	323_G	0.751	0.41
38_V	327_R	0.751	0.41
250_A	274_N	0.751	0.41
54_I	64_V	0.747	0.41
230_L	235_D	0.746	0.41
267_A	304_L	0.745	0.41
221_I	241_I	0.744	0.41
63_V	101_V	0.744	0.41
95_A	100_K	0.741	0.40
29_I	59_F	0.739	0.40
29_I	62_E	0.739	0.40
20_V	26_V	0.738	0.40
80_R	84_I	0.731	0.40
182_W	221_I	0.728	0.39
230_L	241_I	0.725	0.39
118_F	126_T	0.724	0.39
130_F	135_V	0.723	0.39
135_V	150_A	0.722	0.39
133_A	282_D	0.720	0.39
88_K	198_A	0.720	0.39
184_N	187_F	0.719	0.39
189_L	193_L	0.718	0.39
119_R	129_F	0.717	0.39
95_A	102_I	0.710	0.38
319_R	331_G	0.709	0.38
88_K	199_Y	0.708	0.38
193_L	221_I	0.707	0.38
77_N	80_R	0.706	0.38
91_I	199_Y	0.705	0.38
115_T	135_V	0.704	0.38
72_A	77_N	0.703	0.37
289_L	340_M	0.702	0.37
159_E	163_L	0.699	0.37
337_L	341_Y	0.695	0.37
56_S	142_E	0.692	0.37
144_I	166_I	0.691	0.37
72_A	78_E	0.690	0.36
274_N	286_T	0.687	0.36
129_F	282_D	0.687	0.36
241_I	267_A	0.686	0.36
15_V	35_Q	0.682	0.36
225_A	229_K	0.680	0.36
234_S	239_N	0.679	0.36
18_E	120_P	0.679	0.36
245_T	250_A	0.675	0.35
121_L	284_I	0.672	0.35
8_Y	214_I	0.672	0.35
26_V	29_I	0.672	0.35
44_K	93_N	0.671	0.35
193_L	238_S	0.668	0.35
302_E	349_Y	0.668	0.35
15_V	20_V	0.665	0.35
287_S	321_L	0.664	0.34
183_D	187_F	0.663	0.34
182_W	233_I	0.663	0.34
51_T	61_A	0.662	0.34
148_E	152_D	0.661	0.34
27_K	60_H	0.660	0.34
168_E	171_A	0.656	0.34
81_G	84_I	0.656	0.34
118_F	320_H	0.656	0.34
267_A	270_S	0.654	0.34
231_R	263_Y	0.654	0.34
6_R	9_G	0.654	0.34
2_N	310_E	0.653	0.34
76_G	184_N	0.653	0.34
82_R	86_N	0.651	0.33
50_E	53_Y	0.650	0.33
274_N	295_I	0.650	0.33
4_T	8_Y	0.648	0.33
10_R	49_A	0.646	0.33
132_K	214_I	0.646	0.33
284_I	287_S	0.644	0.33
274_N	287_S	0.644	0.33
119_R	284_I	0.643	0.33
274_N	315_P	0.643	0.33
257_V	264_A	0.643	0.33
12_N	99_V	0.641	0.33
31_W	64_V	0.640	0.33
84_I	187_F	0.639	0.33
177_D	183_D	0.638	0.33
89_Q	96_G	0.635	0.32
41_V	47_I	0.631	0.32
169_L	227_Y	0.630	0.32
105_N	111_D	0.629	0.32
260_A	299_G	0.629	0.32
38_V	166_I	0.627	0.32
242_T	269_F	0.627	0.32
51_T	97_F	0.626	0.32
319_R	337_L	0.626	0.32
63_V	312_Y	0.624	0.32
121_L	127_A	0.623	0.31
334_D	341_Y	0.623	0.31
113_T	153_M	0.622	0.31
53_Y	56_S	0.622	0.31
140_P	144_I	0.622	0.31
182_W	186_S	0.622	0.31
296_N	351_A	0.621	0.31
189_L	239_N	0.620	0.31
323_G	333_Y	0.620	0.31
38_V	153_M	0.620	0.31
185_L	230_L	0.619	0.31
141_Q	197_E	0.618	0.31
259_I	277_I	0.618	0.31
87_Y	192_I	0.615	0.31
37_P	43_E	0.614	0.31
95_A	195_V	0.612	0.31
146_T	149_E	0.611	0.31
84_I	87_Y	0.610	0.31
147_V	155_L	0.609	0.30
346_W	350_E	0.608	0.30
132_K	282_D	0.608	0.30
38_V	158_W	0.607	0.30
48_R	96_G	0.605	0.30
14_T	326_C	0.604	0.30
259_I	263_Y	0.603	0.30
100_K	202_Q	0.602	0.30
278_Y	284_I	0.600	0.30
187_F	191_E	0.599	0.30
91_I	195_V	0.599	0.30
141_Q	144_I	0.597	0.30
30_V	101_V	0.597	0.30
87_Y	203_M	0.597	0.30
44_K	89_Q	0.597	0.30
138_L	148_E	0.596	0.30
196_A	277_I	0.594	0.29
143_L	147_V	0.593	0.29
127_A	326_C	0.593	0.29
313_V	331_G	0.593	0.29
200_G	237_P	0.592	0.29
26_V	59_F	0.592	0.29
71_E	110_F	0.591	0.29
47_I	97_F	0.591	0.29
277_I	294_S	0.587	0.29
27_K	62_E	0.586	0.29
5_F	8_Y	0.586	0.29
125_S	298_Q	0.586	0.29
130_F	179_E	0.585	0.29
259_I	304_L	0.584	0.29
92_R	122_E	0.584	0.29
321_L	332_L	0.583	0.29
134_K	287_S	0.582	0.29
297_I	342_L	0.582	0.29
183_D	232_A	0.580	0.28
16_T	21_K	0.580	0.28
163_L	167_K	0.579	0.28
304_L	310_E	0.577	0.28
106_F	315_P	0.577	0.28
101_V	201_V	0.576	0.28
14_T	327_R	0.576	0.28
85_E	184_N	0.573	0.28
272_I	313_V	0.572	0.28
190_Q	235_D	0.572	0.28
193_L	197_E	0.572	0.28
3_M	343_N	0.572	0.28
139_D	215_F	0.571	0.28
320_H	327_R	0.571	0.28
270_S	311_G	0.570	0.28
76_G	180_K	0.569	0.28
107_M	111_D	0.569	0.28
67_V	214_I	0.567	0.28
225_A	263_Y	0.563	0.27
93_N	211_P	0.562	0.27
322_W	334_D	0.561	0.27
110_F	158_W	0.559	0.27
43_E	89_Q	0.559	0.27
202_Q	237_P	0.559	0.27
192_I	238_S	0.558	0.27
201_V	238_S	0.556	0.27
52_E	145_R	0.555	0.27
204_A	268_P	0.553	0.27
68_N	160_P	0.553	0.27
264_A	277_I	0.552	0.27
245_T	270_S	0.551	0.27
56_S	96_G	0.551	0.27
179_E	182_W	0.551	0.27
292_D	347_D	0.551	0.27
14_T	153_M	0.550	0.26
29_I	233_I	0.549	0.26
302_E	306_K	0.548	0.26
189_L	197_E	0.547	0.26
3_M	23_I	0.547	0.26
17_L	21_K	0.546	0.26
128_L	205_I	0.544	0.26
68_N	155_L	0.544	0.26
158_W	161_E	0.544	0.26
89_Q	118_F	0.543	0.26
45_E	49_A	0.543	0.26
90_T	93_N	0.542	0.26
182_W	196_A	0.539	0.26
304_L	313_V	0.539	0.26
164_A	167_K	0.539	0.26
178_E	220_I	0.539	0.26
196_A	199_Y	0.538	0.26
260_A	270_S	0.538	0.26
183_D	302_E	0.537	0.26
324_E	333_Y	0.537	0.26
27_K	294_S	0.536	0.26
181_L	185_L	0.534	0.25
75_L	196_A	0.533	0.25
121_L	337_L	0.533	0.25
113_T	154_T	0.529	0.25
237_P	265_G	0.529	0.25
81_G	88_K	0.528	0.25
190_Q	233_I	0.527	0.25
93_N	96_G	0.527	0.25
129_F	284_I	0.525	0.25
314_R	318_G	0.525	0.25
28_G	58_G	0.525	0.25
26_V	161_E	0.523	0.25
103_C	161_E	0.522	0.25
18_E	176_V	0.521	0.25
31_W	34_H	0.521	0.25
147_V	151_S	0.521	0.25
336_A	341_Y	0.521	0.25
274_N	293_G	0.520	0.25
13_D	114_R	0.520	0.25
166_I	170_F	0.520	0.25
38_V	160_P	0.520	0.25
298_Q	347_D	0.520	0.25
234_S	241_I	0.520	0.25
102_I	261_K	0.518	0.24
14_T	325_Q	0.516	0.24
35_Q	43_E	0.515	0.24
93_N	97_F	0.514	0.24
182_W	225_A	0.514	0.24
230_L	233_I	0.513	0.24
243_L	304_L	0.512	0.24
155_L	161_E	0.511	0.24
37_P	211_P	0.511	0.24
89_Q	202_Q	0.511	0.24
132_K	212_W	0.511	0.24
47_I	51_T	0.510	0.24
141_Q	279_E	0.510	0.24
286_T	295_I	0.508	0.24
263_Y	303_E	0.507	0.24
331_G	334_D	0.507	0.24
128_L	319_R	0.507	0.24
67_V	204_A	0.507	0.24
176_V	180_K	0.506	0.24
301_M	348_A	0.506	0.24
75_L	180_K	0.505	0.24
170_F	175_T	0.505	0.24
175_T	255_D	0.505	0.24
339_I	343_N	0.505	0.24
6_R	13_D	0.505	0.24
2_N	243_L	0.505	0.24
32_A	63_V	0.505	0.24
28_G	235_D	0.503	0.24
71_E	170_F	0.503	0.24
175_T	258_E	0.502	0.23
297_I	340_M	0.502	0.23
122_E	201_V	0.501	0.23
108_P	173_Y	0.501	0.23
67_V	159_E	0.500	0.23

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4eacA	1	0.9777	100	0.468	Contact Map
3bdkA	2	0.9387	100	0.553	Contact Map
1tz9A	2	0.9526	100	0.643	Contact Map
3vniA	4	0.7493	99.9	0.855	Contact Map
1i60A	1	0.7577	99.9	0.858	Contact Map
2hk0A	3	0.7437	99.9	0.859	Contact Map
3cqjA	2	0.7382	99.9	0.861	Contact Map
3obeA	1	0.7242	99.9	0.862	Contact Map
2qulA	2	0.7437	99.9	0.863	Contact Map
3u0hA	3	0.7604	99.9	0.863	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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