FABF - BACSU - GREMLIN Contacts

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FABF - 3-oxoacyl-[acyl-carrier-protein] synthase 2

UniProt:	O34340	Sequences: MTKKRVVVTGLGALSPLGNDVDTSWNNAINGVSGIGPITRVDAEEYPAKVAAELKDFNVEDYMDKKEARKMDRFTQYAVVAAKMAVEDADLNITDEIAPRVGVWVGSGIGGLETLESQFEIFLTKGPRRVSPFFVPMMIPDMATGQISIALGAKGVNSCTVTACATGTNSIGDAFKVIQRGDADVMVTGGTEAPLTRMSFAGFSANKALSTNPDPKTASRPFDKNRDGFVMGEGAGIIVLEELEHALARGAKIYGEIVGYGSTGDAYHITAPAQDGEGGARAMQEAIKDAGIAPEEIDYINAHGTSTYYNDKYETMAIKTVFGEHAHKLAVSSTKSMTGHLLGAAGGIEAIFSILAIKEGVIPPTINIQTPDEECDLDYVPDEARRQELNYVLSNSLGFGGHNATLIFKKYQS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	413 (396)
Sequences:	21132 (13797)
Seq/√Len:	693.3

ECOLI - FABF FABB
BACSU - FABF PKSF PKSL PKSN PKSJ PKSM PKSR

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
280_A	320_T	3.204	1.00
258_V	409_K	3.100	1.00
20_D	23_T	2.862	1.00
353_S	392_V	2.817	1.00
100_R	184_D	2.717	1.00
26_N	30_N	2.707	1.00
172_G	260_Y	2.696	1.00
255_G	354_I	2.693	1.00
224_K	370_T	2.646	1.00
224_K	373_E	2.549	1.00
391_Y	409_K	2.544	1.00
361_V	384_A	2.451	1.00
4_K	244_E	2.420	1.00
254_Y	358_K	2.357	1.00
88_D	254_Y	2.296	1.00
85_A	239_V	2.289	1.00
242_E	245_H	2.231	1.00
29_I	361_V	2.228	1.00
27_N	34_G	2.210	1.00
222_F	302_A	2.208	1.00
81_A	235_A	2.142	1.00
27_N	32_V	2.106	1.00
19_N	23_T	2.080	1.00
221_P	336_S	2.072	1.00
356_A	363_P	2.067	1.00
296_E	391_Y	2.064	1.00
178_I	242_E	2.059	1.00
350_A	408_F	2.056	1.00
104_W	177_V	2.052	1.00
171_I	350_A	2.036	1.00
241_E	251_A	2.006	1.00
5_R	258_V	1.962	1.00
361_V	386_R	1.959	1.00
225_N	370_T	1.958	1.00
280_A	284_Q	1.956	1.00
176_K	180_R	1.945	1.00
364_P	384_A	1.938	1.00
107_S	143_A	1.916	1.00
330_A	385_R	1.910	1.00
293_A	296_E	1.857	1.00
241_E	249_R	1.816	1.00
83_K	87_E	1.814	1.00
82_A	147_I	1.813	1.00
216_K	227_D	1.809	1.00
82_A	187_V	1.796	1.00
63_M	71_M	1.794	1.00
102_G	186_M	1.791	1.00
100_R	285_E	1.781	1.00
390_N	410_K	1.773	1.00
35_I	52_A	1.755	1.00
292_I	391_Y	1.754	1.00
379_Y	385_R	1.736	1.00
15_S	348_I	1.733	1.00
105_V	237_I	1.724	1.00
243_L	247_L	1.714	1.00
362_I	381_P	1.697	1.00
355_L	358_K	1.692	1.00
245_H	248_A	1.691	1.00
236_G	347_G	1.686	1.00
225_N	369_Q	1.664	1.00
355_L	359_E	1.663	1.00
37_P	50_V	1.653	1.00
280_A	321_V	1.650	1.00
175_F	257_I	1.644	1.00
8_V	350_A	1.633	1.00
189_G	237_I	1.624	1.00
24_S	334_T	1.624	1.00
37_P	49_K	1.613	1.00
36_G	55_K	1.605	1.00
183_A	186_M	1.605	1.00
232_G	341_L	1.580	1.00
252_K	358_K	1.575	1.00
12_G	81_A	1.573	1.00
175_F	179_Q	1.573	1.00
33_S	218_A	1.567	1.00
350_A	394_S	1.567	1.00
8_V	354_I	1.565	1.00
106_G	166_T	1.559	1.00
238_I	350_A	1.557	1.00
148_S	157_N	1.555	1.00
334_T	348_I	1.546	1.00
177_V	183_A	1.545	1.00
300_I	318_I	1.520	1.00
78_A	147_I	1.518	1.00
187_V	239_V	1.512	1.00
176_K	182_D	1.512	1.00
4_K	242_E	1.507	1.00
58_N	61_D	1.505	1.00
81_A	237_I	1.494	1.00
223_D	368_I	1.488	1.00
330_A	379_Y	1.484	1.00
263_T	403_N	1.483	1.00
258_V	391_Y	1.483	1.00
78_A	105_V	1.479	1.00
11_L	21_V	1.469	1.00
92_N	95_D	1.459	1.00
236_G	351_I	1.452	1.00
169_N	404_A	1.447	1.00
47_P	204_S	1.439	1.00
73_R	77_Y	1.438	1.00
29_I	384_A	1.430	1.00
101_V	185_V	1.426	1.00
24_S	352_F	1.425	1.00
162_T	165_A	1.423	1.00
83_K	150_A	1.398	1.00
42_D	45_E	1.398	1.00
88_D	252_K	1.392	1.00
185_V	239_V	1.390	1.00
260_Y	406_L	1.386	1.00
360_G	390_N	1.383	1.00
78_A	237_I	1.380	1.00
234_G	341_L	1.363	1.00
158_S	173_D	1.362	1.00
176_K	179_Q	1.362	1.00
102_G	183_A	1.361	1.00
216_K	220_R	1.353	1.00
336_S	366_I	1.353	1.00
299_Y	362_I	1.353	1.00
281_R	285_E	1.351	1.00
297_I	391_Y	1.349	1.00
6_V	240_L	1.343	1.00
223_D	370_T	1.339	1.00
154_K	281_R	1.321	1.00
393_L	407_I	1.318	1.00
330_A	362_I	1.317	1.00
220_R	225_N	1.310	1.00
102_G	156_V	1.306	1.00
6_V	175_F	1.306	1.00
5_R	256_E	1.305	1.00
169_N	402_H	1.300	1.00
78_A	143_A	1.300	1.00
177_V	182_D	1.298	1.00
365_T	368_I	1.296	1.00
330_A	381_P	1.288	1.00
26_N	32_V	1.287	1.00
97_I	152_G	1.286	1.00
144_T	159_C	1.270	1.00
17_L	34_G	1.270	1.00
315_T	331_V	1.270	1.00
4_K	7_V	1.268	1.00
223_D	369_Q	1.264	1.00
263_T	282_A	1.253	1.00
23_T	26_N	1.253	1.00
299_Y	332_S	1.244	1.00
393_L	405_T	1.243	1.00
336_S	365_T	1.238	1.00
238_I	347_G	1.236	1.00
254_Y	354_I	1.232	1.00
368_I	371_P	1.231	1.00
11_L	351_I	1.221	1.00
362_I	387_Q	1.221	1.00
184_D	245_H	1.220	1.00
26_N	29_I	1.216	1.00
387_Q	390_N	1.215	1.00
357_I	408_F	1.214	1.00
360_G	410_K	1.214	1.00
210_S	227_D	1.205	1.00
338_T	348_I	1.197	1.00
145_G	400_G	1.191	1.00
395_N	405_T	1.188	1.00
284_Q	288_K	1.180	1.00
13_A	21_V	1.179	1.00
169_N	262_S	1.176	1.00
105_V	189_G	1.167	1.00
299_Y	353_S	1.165	1.00
261_G	282_A	1.164	1.00
261_G	286_A	1.164	1.00
171_I	240_L	1.151	1.00
341_L	348_I	1.150	1.00
15_S	236_G	1.144	1.00
318_I	331_V	1.141	1.00
82_A	237_I	1.140	1.00
282_A	286_A	1.138	1.00
238_I	351_I	1.133	1.00
85_A	237_I	1.132	1.00
372_D	375_C	1.128	1.00
215_P	227_D	1.128	1.00
220_R	227_D	1.119	1.00
259_G	289_D	1.117	1.00
176_K	289_D	1.116	1.00
10_G	88_D	1.104	1.00
157_N	264_G	1.103	1.00
298_D	387_Q	1.099	1.00
190_G	347_G	1.098	1.00
168_T	404_A	1.091	1.00
11_L	254_Y	1.089	1.00
243_L	256_E	1.089	1.00
39_T	53_E	1.087	1.00
22_D	88_D	1.080	1.00
28_A	352_F	1.078	1.00
285_E	289_D	1.078	1.00
334_T	338_T	1.072	1.00
5_R	243_L	1.071	1.00
298_D	390_N	1.069	1.00
360_G	388_E	1.066	1.00
315_T	375_C	1.064	1.00
283_M	321_V	1.062	1.00
369_Q	382_D	1.062	1.00
25_W	359_E	1.059	1.00
337_M	366_I	1.058	1.00
52_A	232_G	1.058	1.00
33_S	367_N	1.057	1.00
292_I	296_E	1.054	1.00
13_A	351_I	1.053	1.00
19_N	55_K	1.052	1.00
174_A	188_T	1.048	1.00
179_Q	289_D	1.046	1.00
35_I	50_V	1.045	1.00
287_I	297_I	1.042	1.00
148_S	264_G	1.038	1.00
287_I	294_P	1.036	1.00
353_S	357_I	1.034	1.00
368_I	380_V	1.034	1.00
316_M	320_T	1.033	1.00
83_K	151_L	1.030	1.00
381_P	385_R	1.029	1.00
61_D	83_K	1.026	1.00
13_A	24_S	1.022	1.00
85_A	187_V	1.015	1.00
200_F	231_M	1.006	1.00
295_E	325_H	0.999	1.00
142_M	271_A	0.996	1.00
217_T	369_Q	0.995	1.00
168_T	406_L	0.986	1.00
81_A	84_M	0.985	1.00
171_I	406_L	0.985	1.00
160_T	173_D	0.983	1.00
86_V	151_L	0.982	1.00
322_F	393_L	0.981	1.00
178_I	240_L	0.981	1.00
353_S	394_S	0.979	1.00
283_M	393_L	0.976	1.00
308_Y	374_E	0.974	1.00
283_M	395_N	0.973	1.00
9_T	241_E	0.967	1.00
184_D	242_E	0.966	1.00
256_E	409_K	0.964	1.00
25_W	363_P	0.961	1.00
171_I	188_T	0.958	1.00
371_P	377_L	0.954	1.00
104_W	186_M	0.953	1.00
101_V	153_A	0.953	1.00
378_D	385_R	0.951	1.00
368_I	382_D	0.950	1.00
357_I	360_G	0.948	1.00
285_E	288_K	0.946	1.00
12_G	85_A	0.944	1.00
244_E	247_L	0.944	1.00
172_G	182_D	0.943	1.00
312_K	316_M	0.942	1.00
11_L	354_I	0.937	1.00
175_F	289_D	0.927	1.00
173_D	176_K	0.926	1.00
287_I	322_F	0.918	1.00
167_G	347_G	0.915	1.00
246_A	253_I	0.914	1.00
231_M	342_L	0.911	1.00
18_G	27_N	0.909	1.00
354_I	408_F	0.905	1.00
22_D	26_N	0.904	1.00
7_V	256_E	0.902	1.00
234_G	348_I	0.900	1.00
29_I	359_E	0.899	1.00
15_S	351_I	0.898	1.00
276_G	316_M	0.894	1.00
302_A	331_V	0.892	1.00
349_E	394_S	0.889	1.00
174_A	186_M	0.888	1.00
172_G	176_K	0.888	1.00
31_G	364_P	0.887	1.00
77_Y	235_A	0.886	1.00
377_L	380_V	0.885	1.00
167_G	190_G	0.885	1.00
287_I	292_I	0.882	1.00
49_K	52_A	0.880	1.00
301_N	349_E	0.877	1.00
86_V	187_V	0.875	1.00
78_A	189_G	0.869	1.00
292_I	407_I	0.868	1.00
54_L	77_Y	0.864	1.00
300_I	393_L	0.863	1.00
31_G	383_E	0.862	1.00
7_V	243_L	0.862	1.00
162_T	169_N	0.859	1.00
277_E	280_A	0.858	1.00
154_K	277_E	0.855	1.00
12_G	84_M	0.854	1.00
175_F	260_Y	0.852	1.00
20_D	84_M	0.846	1.00
357_I	389_L	0.846	1.00
14_L	84_M	0.845	1.00
103_V	153_A	0.843	1.00
297_I	322_F	0.841	1.00
304_G	333_S	0.840	1.00
304_G	310_N	0.837	1.00
110_G	140_P	0.837	1.00
25_W	29_I	0.833	1.00
24_S	338_T	0.832	1.00
33_S	366_I	0.831	1.00
263_T	281_R	0.830	1.00
283_M	317_A	0.830	1.00
245_H	249_R	0.830	1.00
64_D	67_E	0.826	1.00
315_T	379_Y	0.825	1.00
297_I	407_I	0.824	1.00
286_A	290_A	0.823	1.00
210_S	220_R	0.818	1.00
11_L	88_D	0.817	1.00
51_A	54_L	0.815	1.00
286_A	407_I	0.815	1.00
242_E	247_L	0.813	1.00
34_G	52_A	0.808	1.00
11_L	355_L	0.804	1.00
25_W	355_L	0.803	1.00
107_S	140_P	0.803	1.00
168_T	346_G	0.803	1.00
35_I	230_V	0.799	1.00
47_P	207_K	0.798	1.00
281_R	284_Q	0.797	1.00
185_V	188_T	0.796	1.00
353_S	356_A	0.790	1.00
283_M	287_I	0.790	1.00
57_F	80_V	0.789	1.00
243_L	253_I	0.787	1.00
279_G	397_L	0.787	1.00
22_D	359_E	0.786	1.00
379_Y	382_D	0.784	1.00
333_S	365_T	0.783	1.00
82_A	85_A	0.783	1.00
18_G	34_G	0.782	1.00
258_V	292_I	0.779	1.00
86_V	239_V	0.778	1.00
14_L	80_V	0.775	1.00
187_V	237_I	0.774	1.00
17_L	27_N	0.772	1.00
315_T	319_K	0.770	1.00
284_Q	320_T	0.765	1.00
284_Q	321_V	0.765	1.00
341_L	344_A	0.764	1.00
381_P	384_A	0.764	1.00
145_G	157_N	0.764	1.00
156_V	183_A	0.763	1.00
322_F	329_L	0.763	1.00
277_E	281_R	0.761	1.00
323_G	326_A	0.760	1.00
354_I	357_I	0.758	1.00
108_G	343_G	0.757	1.00
89_A	239_V	0.749	1.00
188_T	240_L	0.749	1.00
185_V	245_H	0.748	1.00
72_D	114_T	0.746	1.00
171_I	347_G	0.746	1.00
104_W	183_A	0.745	1.00
43_A	49_K	0.742	1.00
303_H	307_T	0.741	1.00
7_V	253_I	0.741	1.00
191_T	235_A	0.739	1.00
168_T	394_S	0.737	1.00
107_S	159_C	0.737	1.00
38_I	41_V	0.736	1.00
135_V	202_G	0.735	1.00
182_D	289_D	0.735	1.00
27_N	30_N	0.735	1.00
79_V	150_A	0.734	1.00
270_T	273_A	0.733	1.00
48_A	51_A	0.733	1.00
290_A	407_I	0.731	1.00
201_A	204_S	0.729	1.00
357_I	410_K	0.727	1.00
99_P	184_D	0.727	1.00
40_R	73_R	0.727	1.00
262_S	404_A	0.725	1.00
104_W	158_S	0.724	1.00
307_T	310_N	0.723	1.00
301_N	352_F	0.723	1.00
287_I	407_I	0.721	1.00
298_D	391_Y	0.720	1.00
130_V	201_A	0.719	1.00
283_M	318_I	0.719	1.00
362_I	389_L	0.719	1.00
23_T	27_N	0.718	1.00
14_L	81_A	0.718	1.00
99_P	154_K	0.716	1.00
82_A	151_L	0.710	1.00
371_P	380_V	0.710	1.00
103_V	147_I	0.709	1.00
284_Q	324_E	0.708	1.00
21_V	355_L	0.708	1.00
263_T	285_E	0.704	1.00
247_L	253_I	0.704	1.00
300_I	329_L	0.703	1.00
171_I	257_I	0.702	1.00
48_A	204_S	0.701	1.00
269_I	273_A	0.701	1.00
171_I	238_I	0.701	1.00
208_A	229_F	0.701	1.00
153_A	187_V	0.699	1.00
255_G	408_F	0.697	1.00
309_Y	313_Y	0.697	1.00
365_T	380_V	0.695	1.00
50_V	53_E	0.694	1.00
312_K	374_E	0.692	1.00
74_F	191_T	0.692	1.00
299_Y	392_V	0.691	1.00
276_G	280_A	0.691	1.00
96_E	101_V	0.686	1.00
282_A	405_T	0.685	1.00
38_I	53_E	0.683	1.00
36_G	53_E	0.677	1.00
298_D	389_L	0.677	1.00
325_H	328_K	0.674	1.00
316_M	374_E	0.674	1.00
19_N	56_D	0.672	1.00
319_K	323_G	0.672	1.00
141_D	163_A	0.670	1.00
49_K	53_E	0.669	1.00
354_I	358_K	0.667	1.00
73_R	76_Q	0.666	1.00
108_G	111_G	0.665	1.00
38_I	51_A	0.663	1.00
86_V	96_E	0.663	1.00
168_T	396_S	0.662	1.00
319_K	376_D	0.662	1.00
276_G	317_A	0.661	1.00
257_I	406_L	0.661	1.00
259_G	286_A	0.659	1.00
17_L	36_G	0.658	1.00
38_I	200_F	0.656	1.00
334_T	352_F	0.656	1.00
319_K	377_L	0.655	1.00
5_R	179_Q	0.650	1.00
263_T	278_G	0.650	1.00
185_V	241_E	0.649	1.00
139_I	142_M	0.648	1.00
360_G	386_R	0.648	1.00
10_G	85_A	0.648	1.00
219_S	229_F	0.647	1.00
277_E	320_T	0.647	1.00
75_T	142_M	0.646	1.00
16_P	341_L	0.644	1.00
21_V	88_D	0.644	1.00
24_S	348_I	0.644	1.00
273_A	309_Y	0.643	1.00
98_A	152_G	0.643	1.00
142_M	399_F	0.639	1.00
203_F	208_A	0.638	1.00
244_E	248_A	0.637	1.00
75_T	143_A	0.637	1.00
105_V	144_T	0.636	1.00
315_T	377_L	0.635	1.00
86_V	153_A	0.635	1.00
28_A	355_L	0.633	1.00
188_T	238_I	0.631	1.00
42_D	46_Y	0.631	1.00
177_V	186_M	0.630	1.00
192_E	342_L	0.628	1.00
158_S	162_T	0.627	1.00
229_F	342_L	0.626	1.00
362_I	385_R	0.622	1.00
226_R	372_D	0.622	1.00
78_A	82_A	0.621	1.00
50_V	218_A	0.618	1.00
241_E	245_H	0.618	1.00
220_R	369_Q	0.618	1.00
80_V	84_M	0.618	1.00
180_R	289_D	0.616	1.00
262_S	402_H	0.615	1.00
276_G	313_Y	0.615	1.00
203_F	399_F	0.615	1.00
237_I	347_G	0.614	1.00
84_M	88_D	0.614	1.00
24_S	28_A	0.613	1.00
330_A	387_Q	0.613	1.00
357_I	392_V	0.611	1.00
111_G	115_L	0.611	1.00
338_T	341_L	0.610	1.00
102_G	177_V	0.609	1.00
51_A	200_F	0.609	1.00
388_E	410_K	0.608	1.00
356_A	387_Q	0.607	1.00
8_V	408_F	0.606	1.00
6_V	178_I	0.604	1.00
280_A	317_A	0.601	1.00
330_A	380_V	0.601	1.00
328_K	379_Y	0.600	1.00
292_I	297_I	0.598	1.00
40_R	43_A	0.598	1.00
188_T	347_G	0.597	1.00
208_A	399_F	0.597	1.00
173_D	177_V	0.597	1.00
389_L	409_K	0.597	1.00
210_S	216_K	0.596	1.00
6_V	242_E	0.596	1.00
154_K	278_G	0.596	1.00
21_V	24_S	0.595	1.00
389_L	410_K	0.594	1.00
4_K	179_Q	0.594	1.00
85_A	89_A	0.592	1.00
220_R	367_N	0.590	1.00
301_N	353_S	0.588	1.00
279_G	317_A	0.586	1.00
100_R	281_R	0.586	1.00
287_I	405_T	0.584	1.00
9_T	185_V	0.583	1.00
163_A	399_F	0.583	1.00
17_L	24_S	0.583	1.00
302_A	318_I	0.582	1.00
104_W	173_D	0.579	1.00
9_T	251_A	0.579	1.00
98_A	154_K	0.576	1.00
332_S	363_P	0.574	1.00
387_Q	392_V	0.573	1.00
219_S	306_S	0.571	1.00
91_L	185_V	0.570	1.00
257_I	408_F	0.570	1.00
74_F	143_A	0.568	1.00
302_A	333_S	0.568	1.00
91_L	239_V	0.567	1.00
18_G	55_K	0.567	1.00
71_M	146_Q	0.565	1.00
319_K	327_H	0.565	1.00
94_T	97_I	0.563	1.00
21_V	351_I	0.562	1.00
84_M	87_E	0.561	1.00
62_Y	80_V	0.560	1.00
317_A	321_V	0.556	1.00
356_A	392_V	0.556	1.00
178_I	245_H	0.556	1.00
18_G	23_T	0.556	1.00
169_N	173_D	0.553	1.00
236_G	344_A	0.551	1.00
166_T	170_S	0.548	1.00
275_D	278_G	0.547	1.00
107_S	110_G	0.547	1.00
47_P	50_V	0.546	1.00
37_P	43_A	0.546	1.00
350_A	354_I	0.542	1.00
46_Y	201_A	0.541	1.00
14_L	77_Y	0.541	1.00
216_K	230_V	0.538	1.00
132_P	202_G	0.538	1.00
332_S	362_I	0.537	1.00
181_G	242_E	0.535	1.00
144_T	157_N	0.535	1.00
174_A	240_L	0.535	1.00
394_S	408_F	0.535	1.00
40_R	53_E	0.534	1.00
111_G	195_L	0.533	1.00
219_S	230_V	0.533	1.00
224_K	372_D	0.532	1.00
93_I	96_E	0.532	1.00
19_N	84_M	0.532	1.00
310_N	313_Y	0.531	1.00
75_T	146_Q	0.531	1.00
172_G	262_S	0.531	1.00
57_F	62_Y	0.530	1.00
133_F	136_P	0.529	1.00
221_P	229_F	0.529	1.00
353_S	408_F	0.529	1.00
16_P	52_A	0.527	1.00
225_N	368_I	0.525	1.00
308_Y	312_K	0.525	1.00
273_A	277_E	0.525	1.00
61_D	87_E	0.525	1.00
91_L	251_A	0.524	1.00
177_V	180_R	0.521	1.00
394_S	406_L	0.521	1.00
188_T	237_I	0.521	1.00
265_D	268_H	0.521	1.00
178_I	181_G	0.520	1.00
272_P	309_Y	0.520	1.00
299_Y	356_A	0.520	1.00
15_S	18_G	0.518	1.00
77_Y	193_A	0.517	0.99
276_G	320_T	0.517	0.99
41_V	200_F	0.516	0.99
15_S	341_L	0.516	0.99
337_M	364_P	0.513	0.99
63_M	80_V	0.513	0.99
156_V	177_V	0.513	0.99
108_G	140_P	0.512	0.99
10_G	254_Y	0.511	0.99
287_I	321_V	0.509	0.99
296_E	390_N	0.509	0.99
15_S	24_S	0.509	0.99
223_D	367_N	0.507	0.99
50_V	54_L	0.505	0.99
13_A	348_I	0.505	0.99
347_G	351_I	0.504	0.99
91_L	241_E	0.503	0.99
10_G	252_K	0.502	0.99
114_T	198_M	0.502	0.99
5_R	244_E	0.500	0.99
93_I	97_I	0.500	0.99

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2vz8A	2	0.9588	100	0.04	Contact Map
4na1A	2	0.9709	100	0.104	Contact Map
4tktA	1	0.9685	100	0.123	Contact Map
4qyrA	2	0.9613	100	0.125	Contact Map
2hg4A	2	0.9709	100	0.126	Contact Map
4oqjA	2	0.9831	100	0.128	Contact Map
4mz0A	2	0.9709	100	0.129	Contact Map
4wkyA	2	0.9831	100	0.13	Contact Map
1ox0A	2	0.9903	100	0.13	Contact Map
4kc5A	2	0.9734	100	0.131	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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