CTAG - BACSU - GREMLIN Contacts

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CTAG - Protein CtaG

UniProt:	O34329	Sequences: MNQLEIFGFRAMWSPYLFCILLGITALYLYFYRRMSSKPNRITGKEMVCFLSAMLFLYAAEGSPVDLLGHIMFSAHMVQMAVLYLVVPPLLIAGIPAWLWEKIIFRPSIKPVFSFFTTPLIALLLFNGIFSLYHVPLIFDTVKTDPFYHTLITWLIFVLAFFMWWPLVHKVERLRQLSGLMKLGYIMADGMLLTPACALIMFSGAPLYATYTDPALWAEAMRLCVPADMMGQVPLTGPEMLNTLPLLEDQQLGAVMMKIIQEIVYGTFLAVIFFQWVKKEREKDGQEEPPYIQQTIS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	297 (255)
Sequences:	1458 (1087)
Seq/√Len:	68.0

BACSU - CTAG

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
25_T	54_M	7.062	1.00
73_F	253_G	5.797	1.00
29_L	51_L	5.644	1.00
25_T	51_L	5.444	1.00
100_W	104_I	3.550	1.00
53_A	94_G	3.414	1.00
57_L	87_V	3.409	1.00
112_V	116_F	3.363	1.00
32_Y	47_M	3.354	1.00
45_K	49_C	3.348	1.00
44_G	48_V	3.041	1.00
131_S	196_A	2.965	1.00
21_L	54_M	2.914	1.00
33_R	37_S	2.894	1.00
52_S	90_L	2.846	1.00
42_I	99_L	2.721	1.00
43_T	46_E	2.644	1.00
27_L	31_F	2.613	1.00
50_F	94_G	2.428	1.00
42_I	47_M	2.401	1.00
74_S	249_D	2.346	1.00
22_L	26_A	2.287	1.00
245_P	248_E	2.258	1.00
77_M	149_H	2.248	1.00
43_T	48_V	2.175	1.00
125_L	159_L	2.081	1.00
56_F	87_V	2.071	1.00
111_P	114_S	2.023	1.00
115_F	121_I	1.955	1.00
21_L	58_Y	1.796	1.00
19_C	23_G	1.792	1.00
26_A	30_Y	1.777	1.00
196_A	257_M	1.741	1.00
72_M	243_T	1.719	1.00
76_H	80_M	1.712	1.00
28_Y	94_G	1.670	0.99
72_M	249_D	1.628	0.99
129_I	155_L	1.591	0.99
15_P	19_C	1.584	0.99
51_L	54_M	1.583	0.99
91_L	94_G	1.566	0.99
76_H	149_H	1.530	0.99
95_I	170_K	1.529	0.99
35_M	38_K	1.516	0.99
177_L	181_M	1.506	0.99
36_S	41_R	1.503	0.99
197_C	258_K	1.494	0.99
77_M	257_M	1.467	0.99
59_A	63_S	1.463	0.99
140_D	209_A	1.461	0.99
32_Y	99_L	1.441	0.98
280_E	284_D	1.440	0.98
164_W	268_F	1.434	0.98
141_T	148_Y	1.433	0.98
53_A	91_L	1.402	0.98
15_P	18_F	1.395	0.98
140_D	144_T	1.387	0.98
269_L	273_F	1.366	0.98
136_P	208_Y	1.361	0.98
60_A	82_V	1.357	0.98
212_T	215_A	1.341	0.97
197_C	255_V	1.340	0.97
26_A	33_R	1.321	0.97
88_P	160_A	1.311	0.97
72_M	75_A	1.306	0.97
77_M	80_M	1.284	0.97
123_L	189_D	1.281	0.97
129_I	152_I	1.280	0.97
195_P	264_V	1.274	0.96
127_N	192_L	1.273	0.96
125_L	128_G	1.272	0.96
58_Y	62_G	1.269	0.96
118_T	121_I	1.266	0.96
270_A	273_F	1.258	0.96
11_A	63_S	1.258	0.96
127_N	189_D	1.237	0.96
271_V	274_F	1.206	0.95
48_V	52_S	1.197	0.95
198_A	202_F	1.186	0.95
77_M	85_L	1.185	0.95
142_V	152_I	1.184	0.95
247_L	251_Q	1.178	0.95
43_T	99_L	1.171	0.94
80_M	257_M	1.164	0.94
179_G	279_K	1.163	0.94
24_I	50_F	1.161	0.94
262_E	276_W	1.140	0.93
79_Q	184_G	1.137	0.93
201_M	254_A	1.114	0.93
63_S	79_Q	1.108	0.92
66_D	79_Q	1.101	0.92
65_V	75_A	1.098	0.92
209_A	213_D	1.080	0.92
81_A	261_Q	1.076	0.91
80_M	149_H	1.075	0.91
132_L	138_I	1.070	0.91
112_V	115_F	1.060	0.91
201_M	255_V	1.056	0.91
192_L	196_A	1.051	0.90
81_A	260_I	1.038	0.90
46_E	49_C	1.032	0.90
53_A	87_V	1.019	0.89
17_L	71_I	1.008	0.88
27_L	30_Y	1.006	0.88
23_G	27_L	1.003	0.88
94_G	166_P	0.995	0.88
166_P	185_Y	0.986	0.87
149_H	156_I	0.986	0.87
66_D	211_Y	0.984	0.87
24_I	54_M	0.980	0.87
45_K	170_K	0.978	0.87
248_E	251_Q	0.971	0.86
85_L	193_L	0.968	0.86
206_P	247_L	0.961	0.86
134_H	193_L	0.961	0.86
75_A	78_V	0.958	0.86
80_M	156_I	0.958	0.86
77_M	134_H	0.956	0.86
98_W	171_V	0.955	0.86
266_G	273_F	0.951	0.85
51_L	55_L	0.948	0.85
28_Y	119_P	0.946	0.85
136_P	164_W	0.945	0.85
72_M	242_N	0.945	0.85
72_M	245_P	0.943	0.85
56_F	82_V	0.939	0.85
30_Y	34_R	0.938	0.85
94_G	111_P	0.935	0.84
133_Y	164_W	0.934	0.84
193_L	262_E	0.932	0.84
33_R	111_P	0.927	0.84
139_F	153_T	0.927	0.84
248_E	252_L	0.920	0.83
77_M	156_I	0.920	0.83
84_Y	159_L	0.919	0.83
123_L	188_A	0.918	0.83
113_F	117_T	0.914	0.83
182_K	190_G	0.913	0.83
49_C	52_S	0.908	0.83
134_H	257_M	0.908	0.83
128_G	163_M	0.908	0.83
21_L	60_A	0.904	0.82
50_F	91_L	0.896	0.82
134_H	194_T	0.894	0.82
122_A	166_P	0.879	0.80
85_L	261_Q	0.877	0.80
130_F	186_I	0.877	0.80
260_I	269_L	0.873	0.80
134_H	160_A	0.870	0.80
92_I	165_W	0.869	0.80
42_I	46_E	0.867	0.80
86_V	264_V	0.865	0.79
281_R	284_D	0.861	0.79
25_T	29_L	0.858	0.79
64_P	68_L	0.858	0.79
29_L	33_R	0.851	0.78
190_G	258_K	0.850	0.78
134_H	152_I	0.847	0.78
84_Y	193_L	0.845	0.78
80_M	152_I	0.844	0.78
164_W	260_I	0.841	0.77
274_F	278_K	0.836	0.77
80_M	155_L	0.836	0.77
203_S	206_P	0.829	0.76
66_D	208_Y	0.824	0.76
194_T	262_E	0.820	0.76
69_G	79_Q	0.820	0.76
79_Q	153_T	0.818	0.75
33_R	55_L	0.817	0.75
17_L	150_T	0.816	0.75
271_V	275_Q	0.813	0.75
282_E	285_G	0.809	0.75
148_Y	152_I	0.807	0.74
166_P	269_L	0.805	0.74
281_R	287_E	0.804	0.74
270_A	274_F	0.798	0.74
78_V	256_M	0.798	0.74
65_V	79_Q	0.797	0.74
184_G	188_A	0.797	0.74
175_R	182_K	0.797	0.74
198_A	201_M	0.794	0.73
139_F	143_K	0.790	0.73
76_H	134_H	0.790	0.73
283_K	286_Q	0.781	0.72
283_K	287_E	0.779	0.72
30_Y	33_R	0.779	0.72
49_C	90_L	0.776	0.72
126_F	201_M	0.769	0.71
92_I	118_T	0.769	0.71
68_L	72_M	0.766	0.71
81_A	156_I	0.766	0.71
165_W	208_Y	0.756	0.70
242_N	245_P	0.754	0.69
243_T	246_L	0.750	0.69
80_M	193_L	0.750	0.69
133_Y	142_V	0.748	0.69
84_Y	89_P	0.748	0.69
277_V	281_R	0.746	0.69
171_V	174_L	0.741	0.68
121_I	167_L	0.739	0.68
79_Q	89_P	0.738	0.68
69_G	140_D	0.738	0.68
142_V	145_D	0.733	0.67
202_F	258_K	0.733	0.67
56_F	60_A	0.732	0.67
81_A	264_V	0.732	0.67
88_P	184_G	0.731	0.67
76_H	257_M	0.719	0.66
94_G	135_V	0.716	0.65
119_P	211_Y	0.716	0.65
34_R	267_T	0.713	0.65
74_S	193_L	0.707	0.64
48_V	120_L	0.705	0.64
61_E	83_L	0.705	0.64
168_V	264_V	0.702	0.64
76_H	189_D	0.701	0.64
159_L	209_A	0.701	0.64
108_S	111_P	0.698	0.63
251_Q	261_Q	0.694	0.63
152_I	193_L	0.694	0.63
71_I	143_K	0.692	0.63
13_W	18_F	0.691	0.63
66_D	153_T	0.690	0.63
33_R	36_S	0.689	0.62
216_L	241_L	0.687	0.62
255_V	259_I	0.686	0.62
254_A	257_M	0.679	0.61
104_I	183_L	0.677	0.61
80_M	258_K	0.675	0.61
120_L	190_G	0.674	0.61
114_S	175_R	0.670	0.60
127_N	177_L	0.669	0.60
57_L	157_F	0.669	0.60
74_S	252_L	0.668	0.60
44_G	124_L	0.663	0.59
105_F	109_I	0.661	0.59
127_N	131_S	0.660	0.59
187_M	283_K	0.659	0.59
26_A	45_K	0.656	0.59
50_F	79_Q	0.655	0.59
11_A	58_Y	0.655	0.59
121_I	125_L	0.651	0.58
192_L	254_A	0.651	0.58
107_P	110_K	0.650	0.58
182_K	275_Q	0.646	0.57
202_F	261_Q	0.646	0.57
84_Y	156_I	0.646	0.57
57_L	151_L	0.645	0.57
134_H	171_V	0.644	0.57
18_F	23_G	0.642	0.57
76_H	186_I	0.640	0.57
78_V	280_E	0.639	0.57
90_L	266_G	0.632	0.56
68_L	74_S	0.632	0.56
83_L	167_L	0.631	0.56
189_D	265_Y	0.629	0.55
266_G	270_A	0.625	0.55
97_A	116_F	0.624	0.55
206_P	209_A	0.624	0.55
268_F	272_I	0.624	0.55
105_F	162_F	0.623	0.55
77_M	81_A	0.619	0.54
26_A	102_K	0.619	0.54
103_I	282_E	0.616	0.54
133_Y	260_I	0.615	0.54
174_L	182_K	0.615	0.54
60_A	281_R	0.615	0.54
165_W	173_R	0.611	0.53
86_V	206_P	0.610	0.53
76_H	169_H	0.610	0.53
213_D	216_L	0.607	0.53
200_I	203_S	0.602	0.52
152_I	155_L	0.601	0.52
179_G	182_K	0.600	0.52
53_A	160_A	0.599	0.52
15_P	21_L	0.598	0.52
80_M	261_Q	0.597	0.52
36_S	39_P	0.597	0.52
14_S	62_G	0.596	0.52
123_L	166_P	0.596	0.52
152_I	156_I	0.595	0.51
44_G	205_A	0.594	0.51
60_A	87_V	0.591	0.51
187_M	190_G	0.591	0.51
45_K	120_L	0.591	0.51
133_Y	193_L	0.591	0.51
133_Y	152_I	0.590	0.51
11_A	14_S	0.590	0.51
195_P	198_A	0.589	0.51
190_G	265_Y	0.588	0.51
137_L	148_Y	0.586	0.50
186_I	272_I	0.584	0.50
12_M	16_Y	0.582	0.50
49_C	56_F	0.577	0.49
101_E	173_R	0.577	0.49
208_Y	212_T	0.576	0.49
15_P	124_L	0.576	0.49
92_I	169_H	0.576	0.49
131_S	257_M	0.575	0.49
84_Y	163_M	0.574	0.49
142_V	253_G	0.574	0.49
123_L	207_L	0.573	0.49
65_V	82_V	0.572	0.49
29_L	47_M	0.572	0.49
89_P	164_W	0.571	0.49
12_M	15_P	0.571	0.49
279_K	283_K	0.570	0.48
128_G	188_A	0.568	0.48
117_T	121_I	0.568	0.48
69_G	150_T	0.568	0.48
59_A	65_V	0.567	0.48
142_V	148_Y	0.567	0.48
73_F	76_H	0.566	0.48
69_G	186_I	0.566	0.48
86_V	278_K	0.565	0.48
126_F	164_W	0.563	0.48
167_L	186_I	0.562	0.47
140_D	199_L	0.559	0.47
186_I	190_G	0.557	0.47
130_F	269_L	0.557	0.47
197_C	254_A	0.557	0.47
139_F	152_I	0.557	0.47
52_S	254_A	0.552	0.46
145_D	270_A	0.550	0.46
35_M	40_N	0.549	0.46
282_E	286_Q	0.548	0.46
263_I	274_F	0.548	0.46
183_L	272_I	0.546	0.46
114_S	285_G	0.546	0.46
99_L	172_E	0.544	0.45
182_K	185_Y	0.542	0.45
112_V	158_V	0.542	0.45
82_V	128_G	0.541	0.45
83_L	100_W	0.540	0.45
64_P	134_H	0.540	0.45
12_M	62_G	0.539	0.45
87_V	204_G	0.539	0.45
183_L	269_L	0.539	0.45
74_S	250_Q	0.538	0.45
210_T	214_P	0.535	0.44
177_L	185_Y	0.534	0.44
94_G	165_W	0.533	0.44
48_V	112_V	0.532	0.44
22_L	287_E	0.532	0.44
104_I	135_V	0.531	0.44
50_F	161_F	0.530	0.44
189_D	269_L	0.530	0.44
14_S	58_Y	0.529	0.44
26_A	51_L	0.528	0.43
241_L	245_P	0.527	0.43
19_C	115_F	0.523	0.43
73_F	200_I	0.523	0.43
20_I	157_F	0.523	0.43
167_L	179_G	0.522	0.43
152_I	195_P	0.522	0.43
155_L	193_L	0.521	0.43
80_M	196_A	0.521	0.43
196_A	262_E	0.520	0.42
114_S	174_L	0.519	0.42
163_M	186_I	0.517	0.42
140_D	211_Y	0.517	0.42
107_P	136_P	0.515	0.42
114_S	176_Q	0.514	0.42
197_C	261_Q	0.513	0.42
262_E	280_E	0.512	0.42
17_L	153_T	0.512	0.42
189_D	258_K	0.511	0.41
196_A	264_V	0.510	0.41
95_I	98_W	0.510	0.41
173_R	177_L	0.510	0.41
265_Y	268_F	0.509	0.41
83_L	253_G	0.508	0.41
125_L	162_F	0.508	0.41
167_L	185_Y	0.508	0.41
123_L	167_L	0.507	0.41
165_W	265_Y	0.507	0.41
244_L	248_E	0.506	0.41
145_D	200_I	0.505	0.41
57_L	149_H	0.503	0.41
123_L	163_M	0.502	0.40
121_I	181_M	0.502	0.40
15_P	203_S	0.500	0.40

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2m20A	2	0.1582	30.8	0.958	Contact Map
3pjzA	2	0.5354	15	0.964	Contact Map
2mqdA	1	0.1448	14.7	0.964	Contact Map
4tphA	2	0.7138	8.5	0.967	Contact Map
1pw4A	1	0.7778	8.2	0.968	Contact Map
2lomA	1	0.2593	7.9	0.968	Contact Map
4j05A	3	0.7643	7.3	0.968	Contact Map
2kncB	1	0.1852	7.1	0.969	Contact Map
2l2tA	2	0.1448	6.9	0.969	Contact Map
3ayfA	2	0.8114	6.8	0.969	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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