KGUA - BACSU - GREMLIN Contacts

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KGUA - Guanylate kinase

UniProt:	O34328	Sequences: MKERGLLIVLSGPSGVGKGTVRQAIFSQEDTKFEYSISVTTRSPREGEVNGVDYFFKTRDEFEQMIADNKLLEWAEYVGNYYGTPVDYVEQTLQDGKDVFLEIEVQGALQVRNAFPEGLFIFLAPPSLSELKNRIVTRGTETDALIENRMKAAKAEIEMMDAYDYVVENDNVETACDKIKAIVLAEHLKRERVAPRYKKMLEVE	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	204 (180)
Sequences:	4949 (3215)
Seq/√Len:	239.6

ECOLI - KGUA PHNN
BACSU - KGUA

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
130_E	133_N	3.520	1.00
132_K	136_V	3.270	1.00
64_Q	68_D	2.691	1.00
28_Q	180_K	2.664	1.00
59_R	63_E	2.497	1.00
39_V	57_K	2.364	1.00
87_D	91_Q	2.342	1.00
136_V	143_D	2.339	1.00
49_V	52_V	2.314	1.00
61_E	64_Q	2.297	1.00
65_M	70_K	2.278	1.00
63_E	81_Y	2.248	1.00
39_V	85_P	2.149	1.00
76_E	79_G	2.017	1.00
58_T	61_E	1.999	1.00
174_T	178_K	1.960	1.00
21_V	123_L	1.943	1.00
34_E	97_K	1.922	1.00
59_R	81_Y	1.909	1.00
66_I	74_W	1.886	1.00
78_V	152_A	1.835	1.00
59_R	76_E	1.828	1.00
86_V	90_E	1.812	1.00
21_V	179_I	1.795	1.00
167_V	175_A	1.794	1.00
143_D	147_E	1.792	1.00
24_A	27_S	1.791	1.00
70_K	87_D	1.731	1.00
75_A	106_Q	1.721	1.00
24_A	176_C	1.707	1.00
59_R	80_N	1.692	1.00
11_S	163_Y	1.688	1.00
88_Y	91_Q	1.682	1.00
90_E	94_Q	1.668	1.00
171_N	174_T	1.647	1.00
77_Y	104_E	1.640	1.00
132_K	147_E	1.612	1.00
49_V	53_D	1.605	1.00
29_E	180_K	1.575	1.00
142_T	145_L	1.554	1.00
109_L	162_A	1.545	1.00
50_N	55_F	1.535	1.00
91_Q	95_D	1.520	1.00
20_T	172_V	1.510	1.00
63_E	67_A	1.510	1.00
112_R	164_D	1.471	1.00
12_G	16_V	1.470	1.00
55_F	88_Y	1.467	1.00
24_A	28_Q	1.464	1.00
63_E	66_I	1.460	1.00
57_K	65_M	1.451	1.00
19_G	102_E	1.408	1.00
34_E	92_T	1.399	1.00
165_Y	182_I	1.383	1.00
21_V	176_C	1.363	1.00
127_S	130_E	1.327	1.00
39_V	65_M	1.323	1.00
76_E	81_Y	1.317	1.00
147_E	151_K	1.308	1.00
29_E	32_K	1.297	1.00
85_P	88_Y	1.296	1.00
24_A	173_E	1.279	1.00
124_A	166_V	1.276	1.00
167_V	179_I	1.273	1.00
35_Y	102_E	1.271	1.00
88_Y	92_T	1.253	1.00
10_L	22_R	1.251	1.00
66_I	81_Y	1.220	1.00
23_Q	53_D	1.218	1.00
177_D	180_K	1.213	1.00
92_T	97_K	1.209	1.00
180_K	184_L	1.184	1.00
103_I	111_V	1.173	1.00
170_D	174_T	1.173	1.00
57_K	61_E	1.170	1.00
159_M	162_A	1.165	1.00
22_R	100_F	1.162	1.00
133_N	137_T	1.147	1.00
8_I	119_L	1.138	1.00
61_E	65_M	1.137	1.00
172_V	176_C	1.137	1.00
86_V	114_A	1.135	1.00
64_Q	67_A	1.114	1.00
23_Q	27_S	1.112	1.00
112_R	120_F	1.104	1.00
92_T	99_V	1.087	1.00
178_K	184_L	1.075	1.00
92_T	95_D	1.071	1.00
101_L	111_V	1.065	1.00
6_L	119_L	1.049	1.00
181_A	184_L	1.048	1.00
124_A	157_I	1.047	1.00
148_N	152_A	1.030	1.00
22_R	102_E	1.023	1.00
28_Q	176_C	1.023	1.00
105_V	159_M	1.017	1.00
72_L	89_V	1.016	1.00
60_D	63_E	1.013	1.00
177_D	181_A	1.001	1.00
155_A	158_E	0.997	1.00
12_G	19_G	0.996	1.00
50_N	61_E	0.994	1.00
167_V	182_I	0.992	1.00
108_A	120_F	0.987	1.00
79_G	148_N	0.986	1.00
152_A	155_A	0.985	1.00
110_Q	113_N	0.972	1.00
69_N	114_A	0.965	1.00
181_A	185_A	0.962	1.00
109_L	159_M	0.962	1.00
165_Y	178_K	0.961	1.00
74_W	81_Y	0.954	1.00
39_V	71_L	0.954	1.00
9_V	120_F	0.953	1.00
128_L	154_K	0.938	1.00
160_M	166_V	0.937	1.00
141_E	146_I	0.921	1.00
10_L	179_I	0.915	1.00
65_M	71_L	0.904	1.00
165_Y	186_E	0.903	1.00
90_E	115_F	0.899	1.00
28_Q	177_D	0.889	1.00
8_I	183_V	0.887	0.99
65_M	85_P	0.870	0.99
78_V	104_E	0.866	0.99
48_E	53_D	0.856	0.99
151_K	154_K	0.850	0.99
19_G	53_D	0.850	0.99
44_P	47_G	0.839	0.99
69_N	86_V	0.832	0.99
39_V	88_Y	0.832	0.99
57_K	62_F	0.826	0.99
21_V	172_V	0.823	0.99
132_K	150_M	0.801	0.99
19_G	22_R	0.794	0.99
119_L	165_Y	0.793	0.99
109_L	113_N	0.790	0.99
170_D	175_A	0.772	0.99
62_F	74_W	0.766	0.99
26_F	35_Y	0.766	0.99
8_I	98_D	0.765	0.98
75_A	110_Q	0.762	0.98
72_L	115_F	0.753	0.98
25_I	33_F	0.751	0.98
145_L	148_N	0.747	0.98
44_P	50_N	0.745	0.98
16_V	19_G	0.744	0.98
50_N	56_F	0.739	0.98
169_N	175_A	0.739	0.98
121_I	179_I	0.735	0.98
6_L	186_E	0.735	0.98
65_M	68_D	0.733	0.98
22_R	35_Y	0.729	0.98
16_V	123_L	0.729	0.98
154_K	158_E	0.727	0.98
91_Q	94_Q	0.726	0.98
129_S	132_K	0.721	0.98
29_E	184_L	0.719	0.98
63_E	76_E	0.718	0.98
7_L	115_F	0.717	0.98
13_P	16_V	0.706	0.97
22_R	26_F	0.692	0.97
35_Y	38_S	0.690	0.97
119_L	186_E	0.688	0.97
178_K	181_A	0.688	0.97
175_A	178_K	0.687	0.97
124_A	160_M	0.686	0.97
177_D	184_L	0.684	0.97
24_A	172_V	0.683	0.97
57_K	85_P	0.683	0.97
50_N	57_K	0.682	0.97
77_Y	152_A	0.680	0.97
103_I	110_Q	0.678	0.97
176_C	180_K	0.676	0.97
13_P	157_I	0.674	0.97
136_V	146_I	0.670	0.97
26_F	100_F	0.668	0.96
109_L	120_F	0.667	0.96
25_I	179_I	0.667	0.96
105_V	152_A	0.666	0.96
42_R	56_F	0.658	0.96
45_R	138_R	0.649	0.96
7_L	93_L	0.647	0.96
137_T	140_T	0.647	0.96
119_L	182_I	0.646	0.96
70_K	86_V	0.645	0.96
77_Y	106_Q	0.641	0.96
128_L	132_K	0.641	0.96
25_I	176_C	0.639	0.95
78_V	148_N	0.639	0.95
62_F	81_Y	0.637	0.95
38_S	102_E	0.634	0.95
173_E	177_D	0.630	0.95
11_S	108_A	0.625	0.95
141_E	145_L	0.624	0.95
155_A	159_M	0.617	0.95
172_V	175_A	0.616	0.95
5_G	98_D	0.615	0.94
157_I	160_M	0.613	0.94
37_I	55_F	0.612	0.94
42_R	48_E	0.612	0.94
154_K	157_I	0.611	0.94
37_I	51_G	0.611	0.94
87_D	90_E	0.610	0.94
134_R	138_R	0.609	0.94
14_S	146_I	0.606	0.94
9_V	118_G	0.603	0.94
174_T	177_D	0.602	0.94
158_E	161_D	0.595	0.93
34_E	88_Y	0.595	0.93
103_I	107_G	0.593	0.93
21_V	175_A	0.591	0.93
46_E	140_T	0.585	0.93
33_F	98_D	0.583	0.93
29_E	33_F	0.583	0.93
153_A	156_E	0.583	0.93
105_V	109_L	0.579	0.92
6_L	98_D	0.575	0.92
13_P	153_A	0.573	0.92
68_D	71_L	0.571	0.92
36_S	102_E	0.570	0.92
144_A	147_E	0.569	0.92
34_E	99_V	0.569	0.92
106_Q	110_Q	0.567	0.92
60_D	64_Q	0.565	0.92
39_V	55_F	0.565	0.92
33_F	100_F	0.562	0.91
14_S	131_L	0.557	0.91
14_S	149_R	0.556	0.91
25_I	180_K	0.553	0.91
72_L	86_V	0.552	0.91
138_R	141_E	0.550	0.90
105_V	156_E	0.550	0.90
20_T	24_A	0.549	0.90
146_I	150_M	0.548	0.90
110_Q	114_A	0.546	0.90
66_I	71_L	0.545	0.90
19_G	35_Y	0.543	0.90
17_G	169_N	0.543	0.90
128_L	150_M	0.542	0.90
43_S	58_T	0.538	0.90
72_L	111_V	0.537	0.89
176_C	179_I	0.536	0.89
34_E	95_D	0.534	0.89
43_S	80_N	0.533	0.89
51_G	56_F	0.532	0.89
11_S	120_F	0.531	0.89
8_I	121_I	0.530	0.89
104_E	152_A	0.530	0.89
12_G	160_M	0.530	0.89
103_I	156_E	0.527	0.89
93_L	99_V	0.526	0.88
16_V	78_V	0.526	0.88
41_T	59_R	0.521	0.88
45_R	149_R	0.521	0.88
38_S	107_G	0.520	0.88
42_R	45_R	0.518	0.88
8_I	33_F	0.516	0.88
25_I	29_E	0.514	0.87
71_L	85_P	0.513	0.87
24_A	171_N	0.509	0.87
36_S	84_T	0.508	0.87
78_V	105_V	0.508	0.87
48_E	51_G	0.507	0.87
86_V	115_F	0.506	0.86
36_S	101_L	0.505	0.86
121_I	182_I	0.505	0.86
93_L	98_D	0.504	0.86
38_S	84_T	0.503	0.86
104_E	107_G	0.500	0.86

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2xkxA	2	0.9461	100	0.202	Contact Map
1kjwA	1	0.9461	100	0.21	Contact Map
3tvtA	1	0.9265	100	0.233	Contact Map
1s96A	4	0.9853	100	0.396	Contact Map
4deyA	1	0.7794	100	0.404	Contact Map
3tszA	1	0.7745	100	0.425	Contact Map
3shwA	1	0.7255	100	0.458	Contact Map
1lvgA	1	0.9167	100	0.477	Contact Map
3kfvA	1	0.7255	100	0.489	Contact Map
1z6gA	1	0.9167	100	0.492	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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