GREMLIN Database
TUAA - Putative undecaprenyl-phosphate N-acetylgalactosaminyl 1-phosphate transferase
UniProt: O32274 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 179 (152)
Sequences: 8373 (5797)
Seq/√Len: 470.2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
35_R39_I4.0981.00
73_E81_P3.3191.00
71_T83_K3.2651.00
73_E83_K3.1401.00
56_F121_I2.8431.00
59_L112_I2.8211.00
63_E111_R2.4941.00
115_F119_T2.4771.00
173_A176_K2.4671.00
161_R164_S2.2871.00
76_G156_P2.2591.00
130_V158_F2.1491.00
120_R166_E1.9841.00
61_C66_G1.9461.00
67_P92_I1.8621.00
85_Y129_N1.8161.00
37_M41_F1.8091.00
89_S116_I1.7761.00
143_E147_F1.7711.00
56_F87_L1.7651.00
43_L131_L1.7641.00
46_L128_F1.7611.00
81_P145_P1.7461.00
61_C68_A1.7401.00
42_A46_L1.7361.00
138_I159_T1.6951.00
57_S68_A1.6851.00
165_G169_L1.6701.00
71_T85_Y1.6641.00
53_I87_L1.6101.00
38_D136_S1.5931.00
56_F116_I1.5711.00
69_I85_Y1.5041.00
75_V81_P1.4591.00
41_F137_M1.4571.00
55_V59_L1.4401.00
45_G49_A1.4191.00
170_R173_A1.4151.00
128_F132_K1.4021.00
152_Q155_I1.3861.00
60_I64_T1.3801.00
160_Q174_E1.3631.00
39_I43_L1.3551.00
75_V148_T1.3171.00
51_P54_A1.3171.00
171_Y174_E1.3031.00
67_P88_R1.2781.00
42_A131_L1.2741.00
45_G127_L1.2381.00
45_G137_M1.2211.00
47_A50_L1.2151.00
60_I63_E1.2011.00
144_R147_F1.1961.00
41_F45_G1.1851.00
147_F151_F1.1731.00
143_E148_T1.1671.00
58_I62_L1.1531.00
129_N134_D1.1471.00
145_P149_E1.1451.00
91_K94_A1.1451.00
39_I42_A1.1431.00
42_A47_A1.1141.00
127_L137_M1.1021.00
143_E151_F1.1001.00
112_I116_I1.0981.00
34_K38_D1.0981.00
116_I119_T1.0881.00
161_R177_A1.0841.00
49_A53_I1.0831.00
120_R167_R1.0531.00
46_L50_L1.0491.00
162_L174_E1.0341.00
93_D96_K1.0331.00
61_C64_T1.0301.00
56_F59_L0.9871.00
97_S100_V0.9841.00
143_E171_Y0.9811.00
102_A162_L0.9781.00
34_K136_S0.9741.00
66_G92_I0.9731.00
63_E112_I0.9711.00
49_A52_M0.9601.00
43_L47_A0.9581.00
151_F171_Y0.9511.00
91_K107_P0.9481.00
85_Y132_K0.9451.00
59_L63_E0.9421.00
70_Y95_E0.9421.00
54_A58_I0.9381.00
29_R32_A0.9271.00
57_S60_I0.9081.00
82_F135_M0.9061.00
72_Q84_L0.9051.00
68_A87_L0.9041.00
39_I131_L0.8981.00
105_Q114_A0.8981.00
130_V137_M0.8891.00
53_I124_L0.8871.00
85_Y128_F0.8841.00
50_L53_I0.8811.00
143_E174_E0.8621.00
53_I69_I0.8591.00
170_R174_E0.8551.00
148_T151_F0.8541.00
124_L127_L0.8531.00
140_P156_P0.8521.00
100_V174_E0.8491.00
109_V114_A0.8461.00
75_V145_P0.8461.00
146_V151_F0.8341.00
51_P55_V0.8301.00
101_W151_F0.8151.00
52_M56_F0.8121.00
128_F134_D0.8101.00
172_D176_K0.8101.00
50_L54_A0.8061.00
63_E110_T0.8001.00
144_R151_F0.7851.00
60_I68_A0.7781.00
101_W147_F0.7741.00
59_L62_L0.7711.00
120_R165_G0.7641.00
171_Y175_G0.7641.00
162_L165_G0.7581.00
40_W44_I0.7551.00
60_I88_R0.7551.00
165_G168_R0.7531.00
64_T112_I0.7521.00
144_R171_Y0.7511.00
46_L131_L0.7461.00
61_C67_P0.7451.00
154_E176_K0.7421.00
64_T88_R0.7311.00
75_V144_R0.7301.00
84_L126_Q0.7281.00
48_I51_P0.7241.00
147_F162_L0.7241.00
111_R114_A0.7141.00
28_A31_L0.7131.00
167_R174_E0.7121.00
169_L174_E0.7121.00
143_E162_L0.7071.00
112_I115_F0.6971.00
151_F155_I0.6971.00
100_V103_Q0.6901.00
29_R33_I0.6871.00
57_S61_C0.6861.00
53_I56_F0.6851.00
101_W143_E0.6841.00
33_I36_V0.6841.00
49_A56_F0.6841.00
70_Y144_R0.6811.00
49_A127_L0.6741.00
169_L177_A0.6731.00
111_R115_F0.6681.00
164_S177_A0.6671.00
118_R126_Q0.6651.00
41_F44_I0.6641.00
49_A87_L0.6601.00
143_E175_G0.6591.00
102_A147_F0.6541.00
155_I175_G0.6511.00
31_L77_K0.6501.00
35_R38_D0.6491.00
36_V39_I0.6431.00
140_P174_E0.6411.00
42_A49_A0.6381.00
147_F171_Y0.6260.99
32_A36_V0.6220.99
53_I128_F0.6210.99
30_Y33_I0.6180.99
60_I87_L0.6170.99
147_F150_K0.6140.99
73_E145_P0.6090.99
101_W168_R0.6050.99
98_G101_W0.6030.99
173_A177_A0.6020.99
102_A167_R0.6010.99
116_I121_I0.5990.99
65_P88_R0.5910.99
54_A57_S0.5890.99
101_W144_R0.5890.99
140_P144_R0.5850.99
39_I136_S0.5820.99
33_I37_M0.5790.99
99_A174_E0.5780.99
46_L53_I0.5780.99
90_M108_R0.5750.99
143_E155_I0.5750.99
95_E108_R0.5680.99
116_I126_Q0.5670.99
127_L158_F0.5660.99
155_I171_Y0.5650.99
61_C65_P0.5650.99
143_E167_R0.5630.99
115_F121_I0.5630.99
60_I112_I0.5600.99
64_T126_Q0.5540.99
104_K168_R0.5530.99
95_E98_G0.5520.99
167_R171_Y0.5520.99
36_V40_W0.5500.99
39_I46_L0.5500.99
41_F127_L0.5490.99
37_M137_M0.5480.99
55_V58_I0.5470.99
102_A106_D0.5460.99
99_A160_Q0.5440.99
146_V150_K0.5440.99
42_A137_M0.5430.99
95_E102_A0.5410.98
71_T84_L0.5410.98
88_R116_I0.5400.98
102_A107_P0.5380.98
37_M40_W0.5360.98
35_R42_A0.5310.98
28_A32_A0.5300.98
97_S103_Q0.5300.98
168_R171_Y0.5250.98
172_D175_G0.5230.98
57_S87_L0.5180.98
44_I47_A0.5160.98
47_A51_P0.5160.98
165_G177_A0.5140.98
128_F131_L0.5110.98
62_L65_P0.5110.98
85_Y134_D0.5020.98
90_M109_V0.5000.97
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3floA 3 0.4581 9.4 0.959 Contact Map
1jb0F 1 0.5419 6.5 0.962 Contact Map
4hi1A 3 0.2793 6.3 0.962 Contact Map
4kt0F 1 0.5251 6.1 0.962 Contact Map
2m8rA 1 0.3296 4.7 0.964 Contact Map
2bjdA 1 0.2737 3.9 0.966 Contact Map
4guaA 3 0.324 3.5 0.966 Contact Map
4w8pB 1 0.1173 3.1 0.967 Contact Map
2kogA 1 0.3073 3.1 0.967 Contact Map
3fymA 1 0.0838 2.9 0.968 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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